Gene detail

Detailed information of scaffold691.g2.t1 in Morbakka virulenta

Genomic Location: scaffold691:106756...125529
NR annotation: XP_022338255.1, lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [Crassostrea virginica]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold691.g2.t1

GGTGTCAACATAAAAATGGCCAAATTTTCCAGCCCCAGCTTGTTTTGAGTTTTGAGGGAAGGGAATTTTCAACAATAATTAGAGATATTTTCAACAAATTACAAGAAACATGGAACAACCACCACCATACCAAGTCAGTGAGAAACAACCACAAGGCTATCCACCACCCCAAGGCTATCCACCACAAGGAGGTTATGCACCACCACCACCACAAGGAGGTTATGCACCACCACCACAAGGAGGTTATGCACCACCACCACAGCCTGATCCGTCATTTGGACACCCTCCACCAACCACAGGTTATGGTGGTTATCAGCAAGTTCAGCCAGGTTATGTACCTTCCCAGCAAGGCTATGCTCACCCCCCAGGACAGGGAACAACAACCACAACAACCATAATTGCAACCCAGCCTGCTGTTGTTGCTGCTGTTCCAATTAGTTTTCATGAATATCCAGTATCAATTACTTGCCCATCGTGCAGAGCACAGGTTGTGACATCAGTGACATATGTCGTTGGCATTTTTGCATGGCTGTTGTTTTTTGTCATGTGTATATTTCTATTATGGATTTGCAGCTTTATACCGTTTTGTGTTGTTTCGTGTAAGGATGCTATTCATCACTGCCCAAACTGCAAGGCACAGGTGGGCGTATTTCGACGTATGTAGTGGTGTCTTCTCTTCATACAGATTGTAAGAAATACCACAAGATTCTGCTGTAAGGACTGGAAGGTAGCATTCAAACTGTAGAAGTCATTGTTTGATTGTATTATTACTGTTGCAAAGCTGGAGCATTAAATGTAATATTTGAAAATAGAAGGGATGTAACAACGCAAGTTACATTTGCACGTATCGTTTGACATTAAATAGTATACATTGTATAACGTTCATATTGCAAAATAATTTTTTTTGGAGAGCCCCATGCAATACCTCGACGTGCGTCTTTTAAATCGTATTATAGTTTTGTTTTCGCTTGATGTGTATTTACGTTGTTGTAATACAAAGCTCAAGTGCTTACGTGTTATTTAGTTTTTTAAAGAAATTTTTTTATGTTTATTCCGTCAAATTGTTGGCTTAACAAATCTGATATGAATATGAATAGTACCACCTGGTCTAGTGGTTGTATCATGATTCAGCGCGACCCTTTTAAGCGCACCAGCTTTCATCGCGTCACGTTTTAGCCTTTGAGCATTATCTTATCTTACATTATATAAGATTAGatcagatcagatcatatcatatcatatatcatatcatatcatatcatatcatgtcatatcatatcatatcaAACGGGACGCGCTGAAACCTGACGCGCTGAATCATTATGCCTTAAATGTTGATGCGCTGAACAGTCCACACACCTGGTCCAGTTGGTGCTGTGTTTACTGTGAGTGCTGGCTACCATGGTTCTCCATTACTTGCTGTTCCTTGATTGTTCTGGTCTTCTTCTTTTGCAAAATAGTGGAATGGGTAGAATTCTTTCTTTGCTTTGGTCTTTGATGTGATGTGATGGTATGTAGGTATTTGTCGGCAAGGCAAATTTTAAGCAGAGGACATTatcttgaaaatgttgaattttatggactcagaggaagccatagatgtaagagctttatcatgtaatgagtcgtaaacgttttgtgaattacgtttgagagatcacatcgtcaggccactaaagtgtcgtggatactgctgttttaaactttggcagtgcggacctaatcacttcagtagcctgcgatggaagaagtatccctcgaaacgtacctaagaaaaagcttacaacagtagacattatGTCTGTTAATAAAGGGTTTTAAAGCCATCTATTATTTTTCGAGTTGACTGGCTAGAGGACCCTTGGGTTGTTCACAAATGTTTGTCAAAAACCGGATTTTCCTCTACACCATTTTGACAAGTATTGTTTAGTTTTTAGTCATTTGCGACCTTTTAATGTAATTGCATCCATGAACCGTCTCTCAGCGACAAAACTGTAATATTTTCTTAATTGTTATTGAGTGGATGAAGTGTTAACCCTGACTTCATCTTTTTCGAGCTAACAGGTAAAGATACTCCCCTATTTTTAGTGTGGAGCAATCTTTTGTAATCTAATGGGGCTTTAGTTCAGAAATAATGCTATACATAAATGGTATATTGATGT

Protein

Uniprot

Uniprot term	Description
Q6GZQ0	Uncharacterized protein 075L OS=Frog virus 3 (isolate Goorha) OX=654924 GN=FV3-075L PE=4 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10601	zf-LITAF-like	LITAF-like zinc ribbon domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037519	Family	LITAF domain containing protein	Interproscan
IPR006629	Domain	LPS-induced tumour necrosis factor alpha factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19363	LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor	-	Lysosome	ko04142	deepkoala