Gene detail

Detailed information of scaffold697.g1.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold697:5141...38734
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold697.g1.t1

gcatggggcaaataatgttccctccaaaaaattttctcgttcccagaccccattctgcgacaagacacaaacataaacattgaaggggaaagaaactgcgatttgaagaggacgtcggtgtttccttgtttttcgtagaatgtaacagccatatacagccacatggttttagacacagaatatcccatgatgggtcaaaaatacacattcttctttgctgcaaaagaggggagattgagcgatcttgtttgggttctcaaccagaagaatgcttcccctaacatcagagatggagaaagtcagtcaactgcattgcatatgacctgtgcaagaggacatgcaaaatgtgcagaagttttgatcaaagcaggtgctcatgtcaactgcagaacagctgaggggatgacaccacttcactttgcaacatatggtggtcatattaattgtgtccacgtccttctgaaagcgaatgctgatgtgcatgctacaacaagatttggctgtacagcactacaccaagcagctttcttcaatcgacagaaatgtgctgaaatgatcatacagaatggaggcggtattaattctcaagaaagctggggactgacaccactagcggttgctgcacaaaaaggagacagccaaatgatgaagatgctactagcaaacaaagcagatacaagcattcaagacaaattagatggaaagacaccattacacatcagcattgaaaatggtcatattgactgcgcaatggcattgctagacggaggagccaatcctaatatccttgatgtcaaaggcatgacagcacttcattatgcttgccgatgtcaaggtgcagagaaattgataccaacgttattagaattcggtgcaagtctgatcgtagttgataaagatcgagaaacagcgtacaacaaacttacaaagtctcgagacaaacatttatcagaagattgcaaagatagattactgacacgactaaaagataatacagaagttaaaaagaatttaaacagtagcctcctaatgaggatgagggcacaaagacaagtttacaaaatggcgccgcaaagaagtgggaaaaagtcaacatggaagaagtatatagcaaatttgagcataaaggacctcatttcttttgcgaagtcaatgctttttgagccgaaaaacacatggattgtagctgctggattgctttttgcagagatctttgtcaacatctttgttatccaaaaagtccgatatacagaaatagattgggaagcatacatggaagaggttgaaggatttgtcaatggtacttacgattattatcaattgaaaggggccactggaccattggtctatccagctggatttgtctatatcttcactggactatattatgtgacatcttatggtgcaaacattagacttggccagtacatctttgcagcattatacatggcattccttgttgctgttttttatctttatcaaaaaggcaacattgtgccaccgtttgccctcttcttcatgtgctgtgcttcatatagaatacactcaatatttgttctaagactcttcaatgatccagtggccatgtttctcttttacgtctccgtttgctgcatgatcaaagatcgttggaattttgcatgcataatttacaggtagagcttcataatttattgcatgcataatttacagtaaataacaggcctgaagtttgaatctgaagaaaagaaattcctgaaagcccatgaataaaataagaaccaatttaagaacctgaacagcctcatttcccactaaatacccaaaacataagaacctagttaggctgacttgcaaaattgtaggttcttatacgcgggtttttactgtagcatcttgcggtcagcgtcaagatgaatattattttatttgctcctggactcttgttgcttttgctgctcacatttggcataccacatacacttatcaagatatccatttgtgcctctgtacagcttggaaggaacttagggttttttgctgtaaatctgccgtgagaacttattgatatcttgattagtttcaatatggcggcatttattaaatttgaggctatgacgtcatcaaatttctaaatcctaaactacaaaagctacagatttctgcttgccaccatcttgtagacctccataaactatggttttcttgaaggaagttcagtgtccaactttgcaagttaaaaaatgaagacttatcaattatcttctcaaacttcattgcaaacgagaccacaacagttcggcctcccctggattcataagcgtacggggcggggggccgggggggcggcagcccccccaatgttggaaaaatcgtcgaaaatcagccccaatcgggcaaaaatctgccctcagtcgggcaaaaatgttggtaaacaatggactttgtgtcgggccgcccccctagattttttcttcccgtacgcttatgcctggattccacagtcgaccaaaaacttcattcgaaagaagaataaaggctacacaaattttacaaagaatagtagacccaataacagactagtggacat

Transcript

scaffold697.g1.t1

GCATGGGGCAAATAATGTTCCCTCCAAAAAATTTTCTCGTTCCCAGACCCCATTCTGCGACAAGACACAAACATAAACATTGAAGGGGAAAGAAACTGCGATTTGAAGAGGACGTCGGTGTTTCCTTGTTTTTCGTAGAATGTAACAGCCATATACAGCCACATGGTTTTAGACACAGAATATCCCATGATGGGTCAAAAATACACATTCTTCTTTGCTGCAAAAGAGGGGAGATTGAGCGATCTTGTTTGGGTTCTCAACCAGAAGAATGCTTCCCCTAACATCAGAGATGGAGAAAGTCAGTCAACTGCATTGCATATGACCTGTGCAAGAGGACATGCAAAATGTGCAGAAGTTTTGATCAAAGCAGGTGCTCATGTCAACTGCAGAACAGCTGAGGGGATGACACCACTTCACTTTGCAACATATGGTGGTCATATTAATTGTGTCCACGTCCTTCTGAAAGCGAATGCTGATGTGCATGCTACAACAAGATTTGGCTGTACAGCACTACACCAAGCAGCTTTCTTCAATCGACAGAAATGTGCTGAAATGATCATACAGAATGGAGGCGGTATTAATTCTCAAGAAAGCTGGGGACTGACACCACTAGCGGTTGCTGCACAAAAAGGAGACAGCCAAATGATGAAGATGCTACTAGCAAACAAAGCAGATACAAGCATTCAAGACAAATTAGATGGAAAGACACCATTACACATCAGCATTGAAAATGGTCATATTGACTGCGCAATGGCATTGCTAGACGGAGGAGCCAATCCTAATATCCTTGATGTCAAAGGCATGACAGCACTTCATTATGCTTGCCGATGTCAAGGTGCAGAGAAATTGATACCAACGTTATTAGAATTCGGTGCAAGTCTGATCGTAGTTGATAAAGATCGAGAAACAGCGTACAACAAACTTACAAAGTCTCGAGACAAACATTTATCAGAAGATTGCAAAGATAGATTACTGACACGACTAAAAGATAATACAGaAGTTAAAAAGAATTTAAACAGTAGCCTCCTAATGAGGATGAGGGCACAAAGACAAGTTTACAAAATGGCGCCGCAAAGAAGTGGGAAAAAGTCAACATGGAAGAAGTATATAGCAAATTTGAGCATAAAGGACCTCATTTCTTTTGCGAAGTCAATGCTTTTTGAGCCGAAAAACACATGGATTGTAGCTGCTGGATTGCTTTTTGCAGAGATCTTTGTCAACATCTTTGTTATCCAAAAAGTCCGATATACAGAAATAGATTGGGAAGCATACATGGAAGAGGTTGAAGGATTTGTCAATGGTACTTACGATTATTATCAATTGAAAGGGGCCACTGGACCATTGGTCTATCCAGCTGGATTTGTCTATATCTTCACTGGACTATATTATGTGACATCTTATGGTGCAAACATTAGACTTGGCCAGTACATCTTTGCAGCATTATACATGGCATTCCTTGTTGCTGTTTTTTATCTTTATCAAAAAGGCAACATTGTGCCACCGTTTGCCCTCTTCTTCATGTGCTGTGCTTCATATAGAATACACTCAATATTTGTTCTAAGACTCTTCAATGATCCAGTGGCCATGTTTCTCTTTTACGTCTCCGTTTGCTGCATGATCAAAGATCGTTGGAATTTTGCATGCATAATTTACAGGTAGAGCTTCATAATTTATTGCATGCATAATTTACAGtaaataacaggcctgaagtttgaatctgaagaaaagaaattcctgaaagcccatgaataaaataagaaccaatttaagaacctgaacagcctcatttcccactaaatacccaaaacataagaacctagttaggctgacttgcaaaattgtaggttcttatacgcgggtttttactgtaGCATCTTGCGGTCAGCGTCAAGATGAATATTATTTTATTTGCTCCTGGACTCTTGTTGCTTTTGCTGCTCACATTTGGCATACCACATACACTTATCAAGATATCCATTTGTGCCTCTGTACAGcttggaaggaacttagggttttttgctgtaaatctgccgtgagaacttattgatatcttgattagtttcaatatggcggcatttattaaatttgaggctatgacgtcatcaaatttctaaatcctaaactacaaaagctacagatttctgcttgccaccatcttgtagacctccataaactatggttttcttgaagGAAGTTCAGTGTCCAACTTTGCAAGTTAAAAAATGAAGACTTATCAATTATCTTCTCAAACTTCATTGCAAACGAGACCACAACAGTTCGGCCTCCCCTGGATTcataagcgtacggggcggggggccgggggggcggcagcccccccaatgttggaaaaatcgtcgaaaatcagccccaatcgggcaaaaatctgccctcagtcgggcaaaaatgttggtaaacaatggactttgtgtcgggccgcccccctagattttttcttcccgtacgcttatgCCTGGATTCCACAGTCGACCAAAAACTTCATTCGAAAGAAGAATAAAGGCTACACAAATTTTACAAAGAATAGTAGACCCAATAACAGACTAGTGGACAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05208 all species →	ALG3	ALG3 protein	Family	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR007873 all species →	Family	Glycosyltransferase, ALG3	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12646 all species →	NOT56 - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0052925 all species →	Molecular Function	dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20032	ZDHHC13_17, HIP14; palmitoyltransferase ZDHHC13/17	EC:2.3.1.225	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.