Gene detail

Detailed information of scaffold697.g3.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold697:58717...71934
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold697.g3.t2

caggtaggacagttttttaatgagcgtattttttcgcgtcggaaaacttggaatcaagatgtaaaacaagcaaattcgctcactaacttcgtttgaaatccgacgaaaactaattaaaatgcgtcagggccgtaggaagaagcttcggattgggggggcaattgttcttaaaacaatagagaacaatacatctaattaagtcatgtgacgtagcaccattgttttaaaaaaatattgggggggcttgagccccccctgcccccccgcttcctacgggcctgaaatgcgtgcagcctttgcactttttgtaaaatttttgcatctgtaaatagattttagatgaatatttatcgaaaaaacagctgtgacgaattgtgacgtaatgaatagctttgaccgcaccttgaattctgataacgaggcaatgtcccatcagaaaccgctggccaaagattttgacttcgtaagttgtcttgaaacgaaaagggaaggagtgtgctgtgtttgttgtctcaagaacgtttgaagtatttcttggtcaaaacacactcaaaattcaccagaagattatagcaaggtagacaaagaagtcaaaatggcaaatccaaatacgaagttagtaagcacccaaaagcaggttgatgaggtggtgggtatcatgcgtcaaaacatggacaaagttcttgaaagagaccataagttgtcagatcttgataacagagcagaatccctacaagctggtgcgtctcaatttgaatccaatgctggaaagttgaagagaaagatgtggtggcaaaattgcaagatgtgggtgattcttattgttgtcatcctgataatcatcgctgttattgtcatttgggcagtagcggacagcaattccaaaaagaaaaaaacaacataaaagacaaccgcagaactcaattcccgcatttgaaattcgattcaggcaagaaactttgtagtagtattgtaattatttagggaagtgatggggctaactttattttatgcacgttccatgtttctaaaggttattgatttgtgctgacactgaaattatttcttgctcccccattcccagtagactgaaagtagtcacatcacgaataccaccggtaattagactatggnactctttgatgtgaatgtccataagtcccagtttgagcaaaaaagtatattgttgttgttgttgtcattgctgttgttgttgcgataactgggtctatttcgtgagtctatcttgtgaacgcagtctaagtcaaataatttttttcctcttgcagtttgggcagtagcggacagcaattccaaaaagaaaaaaacaacataaaagacaaccgcagaactcaattcccgcatttgaaattcgattcaggcaagaaactttgtagtagtattgtaattatttagggaagtgatggggctaactttattttatgcacgttccatgtttctaaaggttattgatttgggctgacactgaaattatttcttgctcccccattcccagtagactgaaagtagtcacatcacgaataccaccggtaattagactatggaggagcgctgcaactaatatgtacctgcggaggaataatttccatagttctgcggaggagataacgaaagacccaaagagaaaaaacgtttctttctctcaatctcttacgctagctcctccatagcagtaaataatgtttcctccgcaaaataacaaagctgtgggaatcgagcacaactgtactgtctgaccacccatgcttatacccttctttgtattgctgtgatctggttgaggaccgctgcaaaagtttgaaaacttgatagacaagcatgtgccatgaatgcaaaaagtaatggacataaaagtttgaaaatttcttgtgtggagaatactggagggattggaatgaataaaacgttgattgatagccgaaccatgttttgtgattttcttctacaggtaaaattgtatttatgaaaattccttcacttcgaaatgcgtagaaaagtgatgaaggccctgttacaagatgagcttctacttaaaacttgcttgcagtggctttgtgagataagtttcactgggtgtgatacgcggaaatttcggagaaaatcctaaacttttttcagtgcaagccgttgcctgagtagagcaagttccacttttcgtgaaactgcctcgcagtgctcgcaacagaaactctggcaaggcaactcgtcgtcaaatttcggggtgttacacggtgcaatgttttgtgaaatatctcgaaacgccattgcaagcaagtttcacgtgaaagctcatcgtgtaacaaggccttaagagcaacttgcaatttttgtaaagatttgattctcaactctgtggcggatcgcaatgtgtttcagtaaggggatcgcccataatttggatcgagtgttagcctcttttaatgcatttggaggttacggactttatataaatcaaattttacctaccgggcgagtaaaaaaaagtttaaacttttcaatcaaacttttattcattccaatatcttgttggggagacgagatacggtttgtccgaggaaacttatgtgtcccccgtgcagtaggttaatgcttatgcgcagtagtgttttgggttggagttctggcggtggccgcacgagcatcaacctactgcacgggggacacatacgttccctcgaacaaaccgtatctcgtctccccaacaaatccctaagtattctccgcatgcaacctcgttcccagggtgttctgacgtcatacactgattatgaggccgtttgttcgaacacaatataactttcgttgatgctattggtatatatatattttttgtttagcgtaattgattatcatctcaagtaaattctgtcaattgat

Transcript

scaffold697.g3.t2

CAGGTAGGACAGTTTTTTAATGAGCGTATTTTTTCGCGTCGGAAAACTTGGAATCAAGATGTAAAACAAGCAAATTCGCTCACTAACTTCGTTTGAAATCCGACGAAAACTAATTAAAATGCGTcagggccgtaggaagaagcttcggattgggggggcaattgttcttaaaacaatagagaacaatacatctaattaagtcatgtgacgtagcaccattgttttaaaaaaatattgggggggcttgagccccccctgcccccccgcttcctacgggcctgAAATGCGTGCAGCCTTTGCACTTTTTGTAAAATTTTTGCATCTGTAAATAGATTTTAGATGAATATTTATCGAAAAAACAGCTGTGACGAATTGTGACGTAATGAATAGCTTTGACCGCACCTTGAATTCTGATAACGAGGCAATGTCCCATCAGAAACCGCTGGCCAAAGATTTTGACTTCGTAAGTTGTCTTGAAACGAAAAGGGAAGGAGTGTGCTGTGTTTGTTGTCTCAAGAACGTTTGAAGTATTTCTTGGTCAAAACACACTCAAAATTCACCAGAAGATTATAGCAAGGTAGACAAAGAAGTCAAAATGGCAAATCCAAATACGAAGTTAGTAAGCACCCAAAAGCAGGTTGATGAGGTGGTGGGTATCATGCGTCAAAACATGGACAAAGTTCTTGAAAGAGACCATAAGTTGTCAGATCTTGATAACAGAGCAGAATCCCTACAAGCTGGTGCGTCTCAATTTGAATCCAATGCTGGAAAGTTGAAGAGAAAGATGTGGTGGCAAAATTGCAAGATGTGGGTGATTCTTATTGTTGTCATCCTGATAATCATCGCTGTTATTGTCATTTGGGCAGTAGCGGACAGCAATTCCAAAAAGAAAAAAACAACATAAAAGACAACCGCAGAACTCAATTCCCGCATTTGAAATTCGATTCAGGCAAGAAACTTTGTAGTAGTATTGTAATTATTTAGGGAAGTGATGGGGCTAACTTTATTTTATGCACGTTCCATGTTTCTAAAGGTTATTGATTTGTGCTGACACTGAAATTATTTCTTGCTCCCCCATTCCCAGTAGACTGAAAGTAGTCACATCACGAATACCACCGGTAATTAGACTATGGNactctttgatgtgaatgtccataagtcccagtttgagcaaaaaagtatattgttgttgttgttgtcattgctgttgttgttgcgataactgggtctatttcgtgagtctaTCTTGTGAACGCAGTCTAAGTCAAATAATTTTTTTCCTCTTGCAGTTTGGGCAGTAGCGGACAGCAATTCCAAAAAGAAAAAAACAACATAAAAGACAACCGCAGAACTCAATTCCCGCATTTGAAATTCGATTCAGGCAAGAAACTTTGTAGTAGTATTGTAATTATTTAGGGAAGTGATGGGGCTAACTTTATTTTATGCACGTTCCATGTTTCTAAAGGTTATTGATTTGGGCTGACACTGAAATTATTTCTTGCTCCCCCATTCCCAGTAGACTGAAAGTAGTCACATCACGAATACCACCGGTAATTAGActatggaggagcgctgcaactaatatgtacctgcggaggaataatttccatagttctgcggaggagataacgaaagacccaaagagaaaaaacgtttctttctctcaatctcttacgctagctcctccatagcagtaaataatgtttcctccgcaaaataacaaagctgtgggaatcgagcacaactgtactgtctgaccacccatgctTATACCCTTCTTTGTATTGCTGTGATCTGGTTGAGGACCGCTGCAAAAGTTTGAAAACTTGATAGACAAGCATGTGCCATGAATGCAAAAAGTAATGGACATAAAAGtttgaaaatttcttgtgtggagaatactggagggattggaatgaataaaacgttgattgatagccgaaccatgttttgtgattttcttcTACAGGTAAAATTGTATTTATGAAAATTCCTTCACTTCGAAATGCGTAGAAAAGTGATGaaggccctgttacaagatgagcttctacttaaaacttgcttgcagtggctttgtgagataagtttcactgggtgtgatacgcggaaatttcggagaaaatcctaaacttttttcagtgcaagccgttgcctgagtagagcaagttccacttttcgtgaaactgcctcgcagtgctcgcaacagaaactctggcaaggcaactcgtcgtcaaatttcggggtgttacacggtgcaatgttttgtgaaatatctcgaaacgccattgcaagcaagtttcacgtgaaagctcatcgtgtaacaaggccttAAGAGCAACTTGCAATTTTTGTAAAGATTTGATTCTCAACTCTGTGGCGGATCGCAATGTGTTTCAGTAAGGGGATCGCCCATAATTTGGATCGAGTGTTAGCCTCTTTTAATGCATTTGGAGGTTACGGACTTTATATAAATCAAATTTTACCTACCGGGCGAGTAAAAAAAAGTTTAAACTTTTCAATCAAACTTTTATTCATTCCAATATCttgttggggagacgagatacggtttgtccgaggaaacttatgtgtcccccgtgcagtaggttaatgcttatgcgcagtagtgttttgggttggagttctggcggtggccgcacgagcatcaacctactgcacgggggacacatacgttccctcgaacaaaccgtatctcgtctccccaacaaATCCCTAAGTATTCTCCGCATGCAACCTCGTTCCCAGGGTGTTCTGACGTCATACACTGATTATGAGGCCGTTTGTTCGAACACAATATAACTTTCGTTGATGCTATTGGTATATATATATTTTTTGTTTAGCGTAATTGATTATCATCTCAAGTAAATTCTGTCAATTGAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00957 all species →	Synaptobrevin	Synaptobrevin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042855 all species →	Domain	v-SNARE, coiled-coil homology domain	Interproscan
IPR001388 all species →	Family	Synaptobrevin-like	Interproscan
IPR016444 all species →	Family	Synaptobrevin/Vesicle-associated membrane protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45701 all species →	SYNAPTOBREVIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0017075 all species →	Molecular Function	syntaxin-1 binding	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0035493 all species →	Biological Process	SNARE complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13505	VAMP3; vesicle-associated membrane protein 3	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.