Gene detail

Detailed information of scaffold7.g17.t2 in Morbakka virulenta

Genomic Location: scaffold7:720106...749440
NR annotation: XP_002157477.2, RNA-binding protein 25 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold7.g17.t2

GATACCCCAGTGGATCCTCATCTGAGAATCGTTGCAGAGGTTACACAAGGATAACTTTTCAACGCAACTGGAATCCTTTGTAAGCATACTAATGTAAGAGAGTTTTGGAGTAAGCTTTTATTTTCGTGACGTATCATGGCTTTTCGCCCACAGCCCAACATTGCGACGCCAAGACCACCATTTCCACTGCCAGCAACGTTTCTCACACCGGCAGGTGGAGGCCTACTTCCAACTCCAGGATTGCAGCCAGGGATGCCGCCTCCAATAATTGGTGGGATAATTCCTGTCCCTGGTATGCAGCCACCAATGCCTGCTCCACCAACAGCCCCAGTTGTGTCACTTCCACCAAGTTTTCAACCAGTAAAGACAAATATGCCTCCAACCAGTGTAAATTTGTTGATGCCTCCAACAACTGCACCACTTCTGGGTCAAACTCCAGCTGCCCCACCACAACCAGTTGTCAGTTCCCAAGCATCAGAAACAGGACCACCATCGTCTACTTCTAATGAGTCAAACAACACCACAGAAAAAAAGGACAGTCAGGATGCACTTCAGGAACAGAAATCACAGCTAACTACAGTGTTTGTTGGAAACATAACCGAGAGAGCATCAGATGCTCTAGTTAGGCAAATTTTAATGAAATGTGGATATATCATCAACTGGAAACGCGTTCAGGGGGCAAATGGGAGACTACAAGCTTTTGGCTTTTGTGAATATTCTAGCCCTGATGCAGGATTAAGAGCGATGAGGTTACTTAATGGTTTAGAGCTTGGAGAAAAAACATTACTGGTCAAAGTTGATTCAAAGACGAGAGCACAACTAGACGAGTATAAAAAGATTAAAAAAGAAGAAAGAAAGGCGAATACAATTGAAACTGATGATGATAAAGATTATGACGTGGAAAAAGACGAGGAAACTAAGAGCACAGATGAATCTTGTAAAAAAGAAATCCTAGGATTATTGAGCCAACATTCCGATGTTCTTTCTGGAAAATACGAAGACTCTCTACCCTACATGAAGAAGTCACATAGTGGAAGTGCTGATAATCTAGAGGGTCTTGATATGGACGATGCCAGAAAAAATCTAGTGTCGAAAGAAATAAGGATGTTTCGAGAATCCTACAAGTTGTTGATTGCGTGAATGAATCTTTTGGGTGATTGGAGCAAAAGAGAATTTTGCACTCTTGGTATCGGTAAGTCTTACTTCTAGCAGCCCGAGACAATCAGCTCTTTTTGTTAAATGGATAGTTAAACTTCTATGTGTATTTCTTCTTCAGTGAGTACTTTGTTTGTAAACCTTTTTTTGAGTAATACCTTATCTTATCTTTGTGTCTCATATCAATTCCTCTTCCTGTAGCATTTCCAAGGACCTGTACATTTTCTCCTCGGCCACTTTCCAGTCGTCTTAAAATGTGTTTTCTGTGTGATACACTTGACTTTGTGTATTTTCTTTGTCAATATACCCATGTGATTTGTTTTTTACATAATCGTTAAGCAAAGTTTTTAATGAAACTGGATATGGCTGTGCAGGTATGACCTTTTTACATTACGTAGATGATTACGTTTGGGCACCGGAGAAAAGAATTTATGTCAACTGCGATAAAGAATTCTGTGGAAAGAATTAGTCAACCGCATTCTTTGTTTTTGAGGAGCAGTTGACAGAATAAAAATAGCTAAAGTTTACTTTTGCAAAATATTCTCCAGGAAAGAAGAACATATTTGAATGCTTTTATTTGCAAATATACACATGTTGAGATTGCCTTCTTCCCTCCCCGTTTACCAAAATCAAGAACTGGGTACTGTACTTGGACGGCAACGTTGCAACTGGGAAAAACGCTGTTATGGTTGATGGCACGCCTTGTTCAATGGAAGTCAAGATTTATGAAAAGGAAACGCGACAGACTTGTAGTTAATTTTTTAAATTCGCAATAAAGTAAATAGTCATTAATTTTACTTCACCAGAATGCTTGACAGGTGTAGGGTTTACGTGAATAAATAGTTGTTATAAGATAGGTGATTGTACAACCCATAACTTTTTTCACCAAAATAAATGTTTTAACCAGAAAGGTGTTTTAATGGCCAAAAAATCTTTTCGTCACAGAATTTTTCGAGGGCCCCCAAATGAGCTGTTAAAAATAGAAATCGTGAAGAAATTAAAATTTATTGAGTCATTCAACCGTGGGAGGTATATAAAAAGGTTTTACGCCATCTACTTCCGCCTTACAAAGCAGACCACGAGATCTTTGAAGCTTGGGTCTATGTAACGCGGGATAAAAAGTTTAGCGAGTTACAACTGATAGTATAGTTATAAAGATATGAGGAAAATAGTCTGGCCAGTAGTCTCCTGCAATTTCCATATGGAAATTGTAGGAGACTACTGGCCGAACCCCAGGTGTAACAGCCTTTTAAAACTCTTGATCAGGAAACATGTTGGCCATCGTATATTAAACCTCCCTGGGCATACACGTGGCTGTATGCCCAGGGAGAAGGGCGATTAGTTGACTGTACGAAACAGGAATAATATCGAGCTAGAGTAGCCTTCCTCTGCACTTAAACTCTAGAGCGTTTCTCGACTGGCGAAAATTGCGCTATAATTAAAGACGCTTAATAAACTAGAAAAAGGAGCTGAGGTATTAGCGTAAGAAAAGCACAAAATGGAAGGGTTAGCACTGGAGAAAAACATGCATCCACATTGGTTCTTGGATATCGTTTTCGTCTGGGATGGATGGAGAAGACAGAAAATGTGAAATTTCATACTCATCTCTGTGTCGCTTCATGGAAAAACCTCACGTTGCTTGTGTCAGCAGCCACGGAAGCAGTTGTTTTAAACACTTAGCAGAATCAATGAGAATTGGGACA

Protein

Uniprot

Uniprot term	Description
B2RY56	RNA-binding protein 25 OS=Mus musculus OX=10090 GN=Rbm25 PE=1 SV=2
P49756	RNA-binding protein 25 OS=Homo sapiens OX=9606 GN=RBM25 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR034268	Domain	RBM25, RNA recognition motif	Interproscan
IPR052768	Family	Pre-mRNA_splicing_regulatory_protein	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18806	RBM25 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan