Gene detail

Detailed information of scaffold7.g38.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold7:473731...488944
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold7.g38.t4

caagctgtgcggaggaaactgcctcaatgattactgaatgtctctctctgaacacacgtgattcaaaacaacatggtcgccgaagtgcatcgtgaaatgtaaaatagatctgtgtgagaccgaatcaagatggatcacagtatcacaaaaccaaagacgcaacgaggcaaaagagcgattgagaagaaggaatcaaaaatcattgaagatataaaaaaaacgatgataatcagaggaggaagaaccagtcaaactatcatagatgtattcaagaatattgggctcagttgtcaaacagtaaacaaatccgtaaactcgcacatgtcggggattatccattgttcatccattgttctctgcagtttgtttggtggcttcacccaagccacaaaaaagtgaccgttaaaaatccacttatatccgagcaatcatagaagatatgaatgtttgtatgcactgaagaaaccaaatgctgtgatgtttcaaaggaagaatattcttcgcccatttgaagatcagacatcactggaatttttctcacagagaaatgatgcatcattacttatttttggctctcattcaaagaaaagaccaaacaatatggtttttggtcgtttctatgatggtcacattctggatatggcagaatttggtttagaaaattttattccaatgtctggatttcaggttgataaatgtactgctggaaccaaaccatgcttgcttttcagtggtgaggcatttgattcagaccctgaatacaaaagaataaaaaatatctttatagatttctggcgtggacaactagtggaacagattcgtttacaaggccttgaacatgtgatgcaatttacagcaattgatggcaaaatttatatgaggagctacagcctttccaatgtttacacattactcaagtaccttacgagtaatatggtacaggaaacgagtgaagatttctggcgtggacaactagtggaacagattcgtttgcaaggccttgagcatgtgatgcaatttacagcaattgatggcaaaatttatatgaggagctacagggtttcattgaaaaagtctggcacaaggacacctcgagtagaaatcaatgaaatgggaccatcgatcgattttgtcgtcaggagaacgaggcttgcctcacatgatttgtataaacaggcctgtagacaacctaaggctgctaaggtccagaagacgaaaaatgtggagcacaatgtcttcggtacaaagactggcagaatacatatgcaatctcaggacttgaataaactgcagttacgaaaaacgaaggcattaaaaagatctgctgataaagcagatggagatgctaaaaaggcaaagaaacagaaacaaggcaacgcttaattatcattattacattttattacatctttccttaaatgtacgtggggcttgagaatttgctgtcgagacactactacactagacttatgacttttcgtcccttgtttccctgcatgctttgatttgctgatatcatttggttaatagggactcatgatattactcttaaaaggtgggctccttttaggcccgcgtagagtggttccgtattcaccaatcaaattgctagaatttagttttcaaccaataaggaggcgttgtttagatagttgttgttgttgcataaaaaagccggttgatacggcctagagttctcgtagctgcgatggatctattttgtttctacagaggaagactactgcttgaatggtatatattttgccatatatatgtatggtatatatatttgataggccaggaaacatcattctttgtactaaaagtttgctttcaatgttgaagctctttgaaacagactttgaaacgattttgttgattgtatgagaactcccgctagtttaggccattttgaaggagggggcccactttttaagagtaatattatgagtccctattgaccaagctatatcagcaaatcaaagaacgcagggaaacaagtctgctactacaccacgacagcaaatgtgtttgtggtcaaaacattctgcacaattattggtctcaatcaaccattacaagttactgataaaaatgaaatactgatatcgttcatgaaattaatttcagtcaagctaccctgattcattgatccattcgcctgccagagaggcatacctatcgtgttcctttgttttcattcaattttaagagatgcctcagataaaacgcatttttgtagcaatattctctgttcaaagttcatgaagttgtttcaatttgtgcagagcccagaaagcgtgggaaaatttttcgagttgacaagctagctttttctaattcacaaaaaccttaagatgattcatatgaggtttggcagtaggcccatatgtatactgttctgacaaaggattgcagataatttgattgtacgtgactcataggaggttttctngatccattcgcctgccagagaggcatacctatcgtgttcctttgttttcattcaattttaagagatgcctcagataaaacgcatttttgtagcaatattctctgttcaaagttcatgaagttgtttcaatttgtgcagagcccagaaagcgtgggaaaatttttcgagttgacaagctagctttttctaattcacaaaaaccttaagatgattcatatgaggtttggcagtaggcccatatgtatactgttctgacaaaggattgcagataatttgattgtacgtgactcataggaggttttctttataagcattcagctgcttgtatcaagtggttttaaagttttgtcaagtggtttttgcatccaaggccaacaaaaactctctaaacag

Transcript

scaffold7.g38.t4

CAAGCTGTGCGGAGGAAACTGCCTCAATGATTACTGAATGTCTCTCTCTGAACACACGTGATTCAAAACAACATGGTCGCCGAAGTGCATCGTGAAATGTAAAATAGATCTGTGTGAGACCGAATCAAGATGGATCACAGTATCACAAAACCAAAGACGCAACGAGGCAAAAGAGCGATTGAGAAGAAGGAATCAAAAATCATTGAAGATATAAAAAAAACGATGATAATCAGAGGAGGAAGAACCAGTCAAACTATCATAGATGTATTCAAGAATATTgggctcagttgtcaaacagtaaacaaatccgtaaactcgcacatgtcggggattatccattgttcatccattgttctctgcagtttgtttggtggcttcacccaagccacaaaaaagtgaccgttaaaaatccacttatatccgagcaatcatagaagatatgaatgtttgTATGCACTGAAGAAACCAAATGCTGTGATGTTTCAAAGGAAGAATATTCTTCGCCCATTTGAAGATCAGACATCACTGGAATTTTTCTCACAGAGAAATGATGCATCATTACTTATTTTTGGCTCTCATTCAAAGAAAAGACCAAACAATATGGTTTTTGGTCGTTTCTATGATGGTCACATTCTGGATATGGCAGAATTTGGTTTAGAAAATTTTATTCCAATGTCTGGATTTCAGGTTGATAAATGTACTGCTGGAACCAAACCATGCTTGCTTTTCAGTGGTGAGGCATTTGATTCAGACCCTGAATACAAAAGAATAAAAAATATCTTTATAGATTTCTGGCGTGGACAACTAGTGGAACAGATTCGTTTACAAGGCCTTGAACATGTGATGCAATTTACAGCAATTGATGGCAAAATTTATATGAGGAGCTACAGcctttccaatgtttacacattactcaagtaccttacgagtaatatggtacaggaaacgagtgaagATTTCTGGCGTGGACAACTAGTGGAACAGATTCGTTTGCAAGGCCTTGAGCATGTGATGCAATTTACAGCAATTGATGGCAAAATTTATATGAGGAGCTACAGGGTTTCATTGAAAAAGTCTGGCACAAGGACACCTCGAGTAGAAATCAATGAAATGGGACCATCGATCGATTTTGTCGTCAGGAGAACGAGGCTTGCCTCACATGATTTGTATAAACAGGCCTGTAGACAACCTAAGGCTGCTAAGGTCCAGAAGACGAAAAATGTGGAGCACAATGTCTTCGGTACAAAGACTGGCAGAATACATATGCAATCTCAGGACTTGAATAAACTGCAGTTACGAAAAACGAAGGCATTAAAAAGATCTGCTGATAAAGCAGATGGAGATGCTAAAAAGGCAAAGAAACAGAAACAAGGCAACGCTTAATTATCATTATTACATTTTATTACATCTTTCCTTAAATGTACGTGGGGCTTGAGAATTTGCTGTCGAGACACTACTACACtagacttatgacttttcgtcccttgtttccctgcatgctttgatttgctgatatcatttggttaatagggactcatgatattactcttaaaaggtgggctccttttaggcccgcgtagagtggttccgtattcaccaatcaaattgctagaatttagttttcaaccaataaggaggcgttgtttagatagttgttgttgttgcataaaaaagccggttgatacggcctagagttctcgtagctgcgatggatctattttgtttctacagaggaagactactgcttgaatggtatatattttgccatatatatgtatggtatatatatttgataggccaggaaacatcattctttgtactaaaagtttgctttcaatgttgaagctctttgaaacagactttgaaacgattttgttgattgtatgagaactcccgctagtttaggccattttgaaggagggggcccactttttaagagtaatattatgagtccctattgaccaagctatatcagcaaatcaaagaacgcagggaaacaagTCTGCTACTACACCACGACAGCAAATGTGTTTGTGGTCAAAACATTCTGCACAATTATTGGTCTCAATCAACCATTACAAGTTACTGATAAAAATGAAATACTGATATCGTTCATGAAATTAATTTCAGTCAAGCTACCCTGATTCATTGATCCATTCGCCTGCCAGAGAGGCATACCTATCGTGTTCCTTTGTTTTCATTCAATTTTAAGAGATGCCTCAGATAAAACGCATTTTTGTAGCAATATTCTCTGTTCAAAGTTCATGAAGTTGTTTCAATTTGTGCAGAGCCCAGAAAGCGTGGGAAAATTTTTCGAGTTGACAAGCTAGCTTTTTCTAATTCACAAAAACCTTAAGATGATTCATATGAGGTTTGGCAGTAGGCCCATATGTATACTGTTCTGACAAAGGATTGCAGATAATTTGATTGTACGTGACTCATAGGAGGTTTTCTNGATCCATTCGCCTGCCAGAGAGGCATACCTATCGTGTTCCTTTGTTTTCATTCAATTTTAAGAGATGCCTCAGATAAAACGCATTTTTGTAGCAATATTCTCTGTTCAAAGTTCATGAAGTTGTTTCAATTTGTGCAGAGCCCAGAAAGCGTGGGAAAATTTTTCGAGTTGACAAGCTAGCTTTTTCTAATTCACAAAAACCTTAAGATGATTCATATGAGGTTTGGCAGTAGGCCCATATGTATACTGTTCTGACAAAGGATTGCAGATAATTTGATTGTACGTGACTCATAGGAGGTTTTCTTTATAAGCATTCAGCTGCTTGTATCAAGTGGTTTTAAAGTTTTGTCAAGTGGTTTTTGCATCCAAGGCCAACAAAAACTCTCTAAACAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04427 all species →	Brix	Brix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007109 all species →	Domain	Brix domain	Interproscan
IPR039770 all species →	Family	Ribosome biogenesis protein Rpf2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12728 all species →	BRIX DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0000463 all species →	Biological Process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0000470 all species →	Biological Process	maturation of LSU-rRNA	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14847	RPF2; ribosome production factor 2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.