Detailed information of scaffold7.g67.t2 in Morbakka virulenta

Genomic Location: scaffold7:2449263...2487920
NR annotation: PFX13576.1, Pogo transposable element with KRAB domain [Stylophora pistillata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5RH73Protein smoothened OS=Danio rerio OX=7955 GN=smo PE=1 SV=1
Q99835Protein smoothened OS=Homo sapiens OX=9606 GN=SMO PE=1 SV=1
P56726Protein smoothened OS=Mus musculus OX=10090 GN=Smo PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03184DDE_1DDE superfamily endonucleaseFamilyInterproscan
PF03221HTH_Tnp_Tc5Tc5 transposase DNA-binding domainDomainInterproscan
PF01534FrizzledFrizzled/Smoothened family membrane regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000539DomainFrizzled/Smoothened, 7TMInterproscan
IPR006600DomainHTH CenpB-type DNA-binding domainInterproscan
IPR017981DomainGPCR, family 2-like, 7TMInterproscan
IPR009057Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR004875DomainDDE superfamily endonuclease domainInterproscan
IPR015526FamilyFrizzled/secreted frizzled-related proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11309FRIZZLEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0007166Biological Processcell surface receptor signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0004888Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0005113Molecular Functionpatched bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0005929Cellular ComponentciliumInterproscan
GO:0007224Biological Processsmoothened signaling pathwayInterproscan
GO:0007389Biological Processpattern specification processInterproscan
GO:0007417Biological Processcentral nervous system developmentInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0030425Cellular ComponentdendriteInterproscan
GO:0071679Biological Processcommissural neuron axon guidanceInterproscan

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