Gene detail

Detailed information of scaffold70.g50.t1 in Morbakka virulenta

Genomic Location: scaffold70:2162121...2165799
NR annotation: MCS5537933.1, reverse transcriptase domain-containing protein [Candidatus Poseidoniaceae archaeon]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold70.g50.t1

atgagttttctgaagaaaaaaccgactgaagggaaacctggaagtcggagggtctctgacgacccgcaggaaagagttcttattagaactggggaagtttctaggccggaggcaagtgaaaatgttgaaagttccaaggatggcagtcgcacggaggaaccaatgggtaggaaggggtggaaaggagagaaaagaggcaagatgggacggactggtttgttcaaaagcaaatggagccattttgaaaggaaagtactttgggaatgtttcgtgaggagtggtggtcgaagggcagatggctacattgggaaagttaaggagatgtgggatgggagagatgtcagtgtgaggagtgttgctagtcttctttcgcagctaaagcaaattgaagccaatgggttgttgtcagtcgtagaacgcggcgagattgaaagaatggtcagagaggaagctttagttgaggaagagtccagcgaaggagaagttgacttttgtatcaggccggagagtggtttaggtgaaatggagatagagaatgtcgtggtagctaatgatgctgaggaaagggatttaagagtagttatagagagagtagatgtatggagaaggggtgacgatatgagagcgttgagtaacgatgaaagtggagccctggcattgctaagagaggtgtaccatagcgaggatgttgttgaagtaccaagtttgaaggctcaggatggtagaaaaataggggaggaggtgaagcttgttgatggattgatgcacaatctggtaagagacagtatgactgtgactgagattaatcggttactgtatgctggatcatatgtggttgcatcccggttaggtgtgatgggaaaaaacaaaacagttagaaagaagaagccatggtggcagaggaggttggaaaagagcattggcgagtggaggaaagatcttggacgaattgaggagataaagcaagggaataaggttcgtcaggttgttcgtgatagattgaataggaaatatgagcttgtagtgaagggaacgatgacagtcagcacaatgttgaagaacaaaatttcttccgctagtgctaagattagacagtttgttgggaaaagccttgccaggagacagaacaaccttttcaagaacaatcaatgtcaactctacaaggagcttaatggcaatggacataagatggaatcctctgctcctaatgcagatgaggcaagagagttctggagtattatctggtccgaggaaaaggaacacgacaaggaagcaagttggttgggtgatgtgagggaaaagtttgcagacgtagagaaacaagaggacattatggtggctctgcaagatgttaaggcagggataagaaagatggcaaactggaaagcccctggacctgactgggtcagaggttactggttcaaaaagttcacctcgctacacttgtcaattgcaacaactctgcaggagtgtttgacgtcaggcgtggtacccgactggatggtcaaggggaggacagttttaattcagaaagattctggaaaggggacagcagctagtaactataggccgatagcttgtctaccattgatgtggaagctgctctctggaatctttgctgaaaagatctacggtcatcttgtaaataataatcttcttcctgaggaacagaagggatgcaggaagaagtcacgtggcacgaaagatcaattgatgatcgataaggcaattttgcacgaggtcagggctatgaagagaaaccttagcatgtgctggattgattacaagaaggcatatgatatggtccctcacagttggattttggagatgctggacatggttggagttgcagagaatgtgcggagtttgctgaaaggaagtatggctgaatggaagacagtactgacggctaataatgaggtgcttggtgaagttaacatcaatcggggaatattccaaggtgactccctttcccctttgatctttgttattgcaatgatcccgctgagtattttactcaacagagagaagcttggatatttcttcggtcacggtagggtgttggtcaatcatttattgtttatggacgacttgaagctatttggacggagtaaacgtgagttggaggcattggtcgaggtggtgagggtttactctagggacattgggatggagtttgggttagataagtgtgctgttttggaaattagacgaggtgaaagggctgaatgtgagggaatcgagctaccgagtggggagttgatgaaggaggttgatgaagatgggtacaagtacctgggagtgctagaaggggcgaaagtaatgcagaagaagatgaaggagaaaattgggaatgagtacctacgacgtgtgaaattgctggcaaagtcgaggttgtatgctgggaacttggttcgcggcatcaatgcgtgggcagttagtgttgtccgatacagctctggaatactggattggtctgatgctgagctacgtaaacttgataccaagacaaggaagattttaacgatgaatggtgctttccataggaatagtagtgtagatcgtctgtacatcggaagaaaggatgggggtcgtggcctgatcagcgttgaagattgtgtgaggcaggaagagttagggttagaagagtatgtacatgctactgaggagacgattttggaacaggtggctggaatgattatgcatggaagggagacaaagaagcattacaagacgagagtggttgaggagagaaaggagagattgatggagaaggctatgcatggtaggttctttcgggagatggatgaaaatgcaacagagagatcagtacagtgggttaaaggtggtttccttgcaaaaagcacagaggcatttgtgtttgctgctcaagagcaagcattgaggacaaggttggcgcagtcgaagtgggatggtggtgttagtcctatgtgtcgcatctgcggaattgaatctgagtcagtttggcatgttgcgtgtgggtgtaaggtactggctcagaaggagtacaagaggcgacatgataggatgggattgagaatatattgggagctgtgcaagaagtatgggttgaaatgtgcggggaaatggtttgaagaggtgcctgacaaagttagaaagagtgaagatggtaggtttgaagtttggtgggatagatcagtggagacaatgcaacaggtggaatctaatcgtccggatgttgttgttgttgaccgcactaagaagagatggctggttgtagattttgctgtgccttccgatcgaaatgtgacagctaaagaagaagaaaagatcactaagtattctcccttggcccaacaaatccgaaagttacatagtgtatgtaccagcgttgtcccaatcgtcgtgggaagcttaggagtggtgacgaagcgcttggagcgcagtttgaaagagttgggcatccctgatgtcttgggtggactccaaacatctaccatcattggaactaccaacatattgaggaaggtgcttaacctctaa

Transcript

scaffold70.g50.t1

tatagacagtccggaagtatttctgagttgttgtttgcgaattctcgtgttgtttcaatgagttttctgaagaaaaaaccgactgaagggaaacctggaagtcggagggtctctgacgacccgcaggaaagagttcttattagaactggggaagtttctaggccggaggcaagtgaaaatgttgaaagttccaaggatggcagtcgcacggaggaaccaatgggtaggaaggggtggaaaggagagaaaagaggcaagatgggacggactggtttgttcaaaagcaaatggagccattttgaaaggaaagtactttgggaatgtttcgtgaggagtggtggtcgaagggcagatggctacattgggaaagttaaggagatgtgggatgggagagatgtcagtgtgaggagtgttgctagtcttctttcgcagctaaagcaaattgaagccaatgggttgttgtcagtcgtagaacgcggcgagattgaaagaatggtcagagaggaagctttagttgaggaagagtccagcgaaggagaagttgacttttgtatcaggccggagagtggtttaggtgaaatggagatagagaatgtcgtggtagctaatgatgctgaggaaagggatttaagagtagttatagagagagtagatgtatggagaaggggtgacgatatgagagcgttgagtaacgatgaaagtggagccctggcattgctaagagaggtgtaccatagcgaggatgttgttgaagtaccaagtttgaaggctcaggatggtagaaaaataggggaggaggtgaagcttgttgatggattgatgcacaatctggtaagagacagtatgactgtgactgagattaatcggttactgtatgctggatcatatgtggttgcatcccggttaggtgtgatgggaaaaaacaaaacagttagaaagaagaagccatggtggcagaggaggttggaaaagagcattggcgagtggaggaaagatcttggacgaattgaggagataaagcaagggaataaggttcgtcaggttgttcgtgatagattgaataggaaatatgagcttgtagtgaagggaacgatgacagtcagcacaatgttgaagaacaaaatttcttccgctagtgctaagattagacagtttgttgggaaaagccttgccaggagacagaacaaccttttcaagaacaatcaatgtcaactctacaaggagcttaatggcaatggacataagatggaatcctctgctcctaatgcagatgaggcaagagagttctggagtattatctggtccgaggaaaaggaacacgacaaggaagcaagttggttgggtgatgtgagggaaaagtttgcagacgtagagaaacaagaggacattatggtggctctgcaagatgttaaggcagggataagaaagatggcaaactggaaagcccctggacctgactgggtcagaggttactggttcaaaaagttcacctcgctacacttgtcaattgcaacaactctgcaggagtgtttgacgtcaggcgtggtacccgactggatggtcaaggggaggacagttttaattcagaaagattctggaaaggggacagcagctagtaactataggccgatagcttgtctaccattgatgtggaagctgctctctggaatctttgctgaaaagatctacggtcatcttgtaaataataatcttcttcctgaggaacagaagggatgcaggaagaagtcacgtggcacgaaagatcaattgatgatcgataaggcaattttgcacgaggtcagggctatgaagagaaaccttagcatgtgctggattgattacaagaaggcatatgatatggtccctcacagttggattttggagatgctggacatggttggagttgcagagaatgtgcggagtttgctgaaaggaagtatggctgaatggaagacagtactgacggctaataatgaggtgcttggtgaagttaacatcaatcggggaatattccaaggtgactccctttcccctttgatctttgttattgcaatgatcccgctgagtattttactcaacagagagaagcttggatatttcttcggtcacggtagggtgttggtcaatcatttattgtttatggacgacttgaagctatttggacggagtaaacgtgagttggaggcattggtcgaggtggtgagggtttactctagggacattgggatggagtttgggttagataagtgtgctgttttggaaattagacgaggtgaaagggctgaatgtgagggaatcgagctaccgagtggggagttgatgaaggaggttgatgaagatgggtacaagtacctgggagtgctagaaggggcgaaagtaatgcagaagaagatgaaggagaaaattgggaatgagtacctacgacgtgtgaaattgctggcaaagtcgaggttgtatgctgggaacttggttcgcggcatcaatgcgtgggcagttagtgttgtccgatacagctctggaatactggattggtctgatgctgagctacgtaaacttgataccaagacaaggaagattttaacgatgaatggtgctttccataggaatagtagtgtagatcgtctgtacatcggaagaaaggatgggggtcgtggcctgatcagcgttgaagattgtgtgaggcaggaagagttagggttagaagagtatgtacatgctactgaggagacgattttggaacaggtggctggaatgattatgcatggaagggagacaaagaagcattacaagacgagagtggttgaggagagaaaggagagattgatggagaaggctatgcatggtaggttctttcgggagatggatgaaaatgcaacagagagatcagtacagtgggttaaaggtggtttccttgcaaaaagcacagaggcatttgtgtttgctgctcaagagcaagcattgaggacaaggttggcgcagtcgaagtgggatggtggtgttagtcctatgtgtcgcatctgcggaattgaatctgagtcagtttggcatgttgcgtgtgggtgtaaggtactggctcagaaggagtacaagaggcgacatgataggatgggattgagaatatattgggagctgtgcaagaagtatgggttgaaatgtgcggggaaatggtttgaagaggtgcctgacaaagttagaaagagtgaagatggtaggtttgaagtttggtgggatagatcagtggagacaatgcaacaggtggaatctaatcgtccggatgttgttgttgttgaccgcactaagaagagatggctggttgtagattttgctgtgccttccgatcgaaatgtgacagctaaagaagaagaaaagatcactaagtattctcccttggcccaacaaatccgaaagttacatagtgtatgtaccagcgttgtcccaatcgtcgtgggaagcttaggagtggtgacgaagcgcttggagcgcagtttgaaagagttgggcatccctgatgtcttgggtggactccaaacatctaccatcattggaactaccaacatattgaggaaggtgcttaacctctaaagctactggtcggtagccggggttaagttttctcgtccggcaggtgaataccatctccctgtgcgggctgtcatgctggacatgaactttgtttatt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-