Detailed information of scaffold71.g29.t4 in Morbakka virulenta

Genomic Location: scaffold71:1012099...1120362
NR annotation: XP_047139268.1, 5'-3' exoribonuclease 1 isoform X2 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8IZH25'-3' exoribonuclease 1 OS=Homo sapiens OX=9606 GN=XRN1 PE=1 SV=1
P977895'-3' exoribonuclease 1 OS=Mus musculus OX=10090 GN=Xrn1 PE=1 SV=1
P403835'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=exo2 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17846XRN_MXrn1 helical domainDomainInterproscan
PF03159XRN_NXRN 5'-3' exonuclease N-terminusFamilyInterproscan
PF18334XRN1_D2_D3Exoribonuclease Xrn1 D2/D3 domainDomainInterproscan
PF18332XRN1_D1Exoribonuclease Xrn1 D1 domainDomainInterproscan
PF18129SH3_12Xrn1 SH3-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047008Homologous_superfamily5'-3' exoribonuclease 1, SH3-like domain superfamilyInterproscan
IPR019786Conserved_siteZinc finger, PHD-type, conserved siteInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR047007Homologous_superfamily5'-3' exoribonuclease 1, D1 domain superfamilyInterproscan
IPR041412DomainXrn1, helical domainInterproscan
IPR004859DomainXrn1, N-terminalInterproscan
IPR041106DomainExoribonuclease Xrn1, D2/D3 domainInterproscan
IPR016494Family5'-3' exoribonuclease 1Interproscan
IPR040992Domain5'-3' exoribonuclease 1, D1 domainInterproscan
IPR027073Family5'-3' exoribonucleaseInterproscan
IPR041385Domain5'-3' exoribonuclease 1, SH3-like domainInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR123415'->3' EXORIBONUCLEASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0004527Molecular Functionexonuclease activityInterproscan
GO:0000956Biological Processnuclear-transcribed mRNA catabolic processInterproscan
GO:0008409Molecular Function5'-3' exonuclease activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12618XRN1, SEP1, KEM1; 5'-3' exoribonuclease 1EC:3.1.13.-
Chromosome and associated proteinsko03036deepkoala

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