Gene detail

Detailed information of scaffold71.g67.t1 in Morbakka virulenta

Genomic Location: scaffold71:2311330...2324645
NR annotation: CAB4021376.1, SCAN domain-containing 3-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold71.g67.t1

gtttttgaggaagaatggagttttcttcaaaaggtgacagatcatgaagataacactgacgcggcaggagaaaatagacattttctcccataagacggcttttttgacgacaaagtgtaaacggcagtacacggaaggagagggtgtcattaaaccagtgttgcaaaatttcgtggaaatactcaaagacgaaagttacgagaaaaccttatcaagcacaatgaccgaaattcctttcagtgatgatactatgacacgtcgtgccgagagtgttgctgcagacctcttcaaacagacattggaggacttcaggatgtctgcattttcttcaatagccgtagacgagtgtacgaacaatacagcaaatgcccagcttctcctttatggagggtatgaaacttcaaaccaaataaaagaggaactgctctgtacgttaactcttaaaacgacgaccacagATTCCTTTGATTCATGTCGCGTTCGTGTAAAGATCAATGAAATCGATAAGCCTTTGAATTCTACCATCATATGCCGTGGACTCCAGTGGAAAAAACTACCCTCTGTTTCAGCAAGAGTATCAAGTTATTTTAATTTTCAAATGGCCAATAAACTGGAATTTCACGGCAATCAGATTCATTTTAGTGAAGGTTCTTTAAAAGACTTTTATCAGTATGAAGGACTTACAATTAACAAAAATGGACTCAAGGACATTCCTTTTGATGAAATAAGAAGATTTAAAAGTCTGAAAGTGCTGAGACTTCGGGAGAATCTGTTATCATCGATAAGACAGAAATTCAAAGGACAATACGAAAAAACTCTTCAGGTTTTAGATTTAGGGAAAAACAGGTTTAAAGAGGTACCAACGAAACAATTATTATCCCTGAGAAATCTACAAGAGCTATACTTAGACCATAATCTGATAGCAAGTTTGCCACCAAAATTCTTTAATGGACAGCGTTTTTCATTTTTGAGGAAACTTGCTCTCAATCATAACAAAATTAGAAACATACCTAATAAATGCTTTCTGGAGTTCTTTAGATATCCTTCAGACAGTAAGGTAGAGCTTGATATTCGTGGAAACAAATTCCGAACTTTGAAATACAGTCATTTTGGAGGACTCAGGAAAATTGAACTGAAACTCCAGTCCAACCCTCTGTACTGCTCTTGCAACAACGAATGGATATGGATGATTCTACACGACAAAGCTTATTTTCAAAATCATGTGACGATATCAATATATCCTGGCAAACCCGATCATATCTGTTTTCGTCAACTTTCAAATGAAAAAGTCACCTTTTCACGTATAAAGAATCGAGTAATGTGTCATACGCCTTTTTGTAAAATACTAAAGGAGACTAACAGTTGTTCCAAAAATGCCATTTGTAAAGGAAACAATAAAAAAGGTGTTCTTTGTGCCTGCAAAGAAGGATTTTATGGTGACGGGAACACGTGTATTAAAGCTATACCTGGTGTGCTTTCCCAATGGGAGCCTTGGGGGCATTGTACAAAAACATGCGAGGGTGGCATTCGAGAAAGACTAAGAAAATGCAGTAGTCAAAAAGAATCAATGAATCTTGCACCTGACTgcagatgttataccgagtatttgtaagagagccggttacaacaagtaaccaaaggtctctcacattctttccctaattcagtactccagtacttttcttaaaattcttgctgttcctaatagtgtagttttttgggtcagtgttgtatctatctgtattcctagtttctctatgtacttttcaaagttcttggttacgcttccgagggcccctaagactattggaatcactacaaccttcttaagactccaaagtctttgaatttctctcttcaagtcctggtatttttcaatcttttcttgttctttttcctggatccttttgtcccctggtatggcaacatcaacaataactgcagtttttgtatttttatccacaatgactaaatctggcctccttgc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF12947	EGF_3	EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR050541	Family	Leucine-rich repeat and transmembrane domain-containing protein	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR024731	Domain	EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24369	ANTIGEN BSP, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan