Gene detail

Detailed information of scaffold72.g12.t1 in Morbakka virulenta

Genomic Location: scaffold72:617492...630179
NR annotation: AAF04002.1, homeodomain protein Otx [Podocoryna carnea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold72.g12.t1

GAATCAAAACAGTCGTTAAAATGACGCAGACACAGTTTATTAAATGTTATTTCACTATGTCCGATTGAAAAAAAATTGAAACGACTTGTACATTTACGCTCAAGTTGTTCTTCACTAAAGAACACTCCTTGGACGTTGGATCTTTCAAAGTGGAAAGTATATTGTTTGAGAGGTTACAACAGATTAGTATCAGAAGAAGATGACTTGGCCGTACAATGGAATGGGGCCTTACTCCTCTCTGCAACAGTCTTGTCTAGGACTTCCATATCATCCAAGTGTTAATTTACACTACCCAATTGTTCCAAATTGTGGCTTTCCAAGGAAGCAAAGGAGGGAAAGGACAACTTTTACAAAATCTCAGTTAGAAATTTTGGAAGATCTTTTCTCGAAAACCCATTATCCAGATATTTTCATGAGAGAAGAAGTTGCGAGAAAAATTACTTTGCCAGAGTCAAGAGTACAGGTCTGGTTTAAAAATAGAAGAGCAAAACACAGACAAAAAGCAAAACAAGAAAAAGATAAAAAGAAGGGAAATAATTCATCAGACAAAGAATCACTTGCCTCACCAAATTCCAGCAGCAACAAAAAATCCCAGAGGCCTATTACTCCACAGTGCGAAAGACGATCTCCCAGTCCAAGTCCCATGATTCCTGAACCGAGGTCAGTAGTTAATTCCAGTAGCACAGATTGGGGTCAAAATAAACAGTCGCCAAGTATATTGAGCCCGTCCATTTCATCAGATCGAAACACTCCATCTTCTCCGTCCTTAAAGCCATGTACTATAGGAGCGTCGCCAACCTACCAGAACTTTGGACCAGCTCAGATGAGCTCAAGCAGATATTGCCAAAACCAAGATTATTCATCTTTTATAGGAATGCAAATGCTACCAGCGGCGCCACATGCCACAACATCAAATGGAGATGATTTACTTGATTACCCAGTATATAATAATCAGACTGTCAACCCTTCATGGGGTTTTGGTGCAGCAATGTAAATGCTCTTATCTAATTGTACACCATTATTAACTATTGCAGAGGATTGGATAACATTTTGCTTGCAAACTCTAAATACTTGTATTAAAATGAGTAGCAATTTTAGAAAATTGGACATTGCGGTCATGATGTAATAATCGGAGATTAAATTTTCATGTTTTGCTTAAAGGATTTATTTAATATTGTGATTTGTCATCATTATTCACTCGAACAGGATATCTTTGTGAAAAAAACCAATTAAAAAGCCAAGAGAGAAAGTTGAAAGACATTTCTTAGTATGTATATATGTAGCTTAATGAAGGACTTTGTTTCAGTTATGCATGTACAAATCTCGCGGCCTTACGTCATTCTAATGCTTCCATTTTGATTTCCAGCTTGTGAAAAAAGAAGGATTTTTTGACAAACTATTAGGTATTTTTCAAAAAACTTTAATGACGACATCGATTGCTTTCTTAAGAAGATCTGTAAATATATAAAATTGATGACAAGTACCAACCGTTCATATACAGACATAAAGTATGAAAGAGAAAGCGGAAAAACTTCCTTTCACAAAAAGTCAAAAAAGCATCCTCAGATAATCATAGGCATACAGCATATTAAACAAACGCTAAAAGCTTCATTCTCTGTCCAGTTTTCACCCTAATCATACTTTACCTTGATAAAAAAAATATGCACATACAAAAGCCTTTTGGAGAGCGATACTTTTCTTTGAGGACAAATACTGCGTATAGAATATCATGCATAAAAACATTTTCAACGTTTCGCTACTTCTCAAAACAAAGGTTCAGTTGCATGATTTTACCTCCAAGTAAACTCTGTCTTAATCCTAAATTTACTCTGATGATATTTTTTAATGACACTGTTTCTTTTTGAAACATTCCGTTAACGTAATTTTCAAAAATCTAATAGCTTATCACCAATGATCTCTCTTATAATGGAGAAAGTTAGATAACATTGTACTTCAGTATGATTAAGAGGCTTTCCTCCTACCTCAGTAAACAGAAGCTATGCCAGTCCTTCATTGTAGCTTTATGAAAACAATCCGCATTTTTATAAGTTGTCGCTCTTTCAAAAGAGATATTATGCTATTAGAATTTCACTAATGACTTTTCAATCGTCCATATTCGTCCATCCAACAATATTGCTTTTTATTTAACACTGTATCATTGTAAAAAAATCAAAAAGTAAAGTGCCCGCAGCATGGAAATGTACAATATAGAAAAATTAGTATGATTTAAAAGCATTTGTGTCAAAATAATAGAAAAAGCATCTTGCTTTGACTCCTTGTATACCGCTATGATAAAACACTTTTAAAATA

Protein

Uniprot

Uniprot term	Description
Q9XSK0	Cone-rod homeobox protein OS=Bos taurus OX=9913 GN=CRX PE=1 SV=1
O43186	Cone-rod homeobox protein OS=Homo sapiens OX=9606 GN=CRX PE=1 SV=1
O54751	Cone-rod homeobox protein OS=Mus musculus OX=10090 GN=Crx PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45793	HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18490	OTX2; homeobox protein OTX2	-	Transcription factors	ko03000	deepkoala