Gene detail

Detailed information of scaffold72.g18.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold72:260090...305434
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold72.g18.t1

catatgctgtgtctgttgccacaagtcaatcttttattttcctctcttttgattgatgtcaacgtagccagatcctttcagatctcaaaagaggaagtgtaagtcttccagagcaagccgacctgcaaagcgcaaacagaaaaagcagttcgtccgaaaatataacgagaaagcaaaagtcttccaaaatgtcgtcaagagagtcactggaggtaactggaatggtacctacggaaaaaattgcagctggtcagttaaacagcaagagaatgaaaatcattgctataactgttggcattttacttgttattgtgataacgacaacattggcaattgtattaaaagatgatccaagcaagagtacaattaagcgtcctgtgactaaacctggctgcagtagttttgacaagcaagcagttattttggtgtccttggatggatttcgagctgactactttgaaaggaacttttcgccaaatatcagaaagctagcaacagagggagtgagagcaaagtatatgaggtcccaatacccaacaatgacgtttccgaaccattatagtatagtgacggggctgtatcctgagtcacatgggattgtttctaacacctttttgaatgaaaatcgaagtgatttgttcagaattggtgggaaaacatcccaagagtcaaaatggtggagaggagagccggaatttgatgacgttacatcctcaaatgagttgaaacgtagaagacctgattattggtacaaatacaatgggagggtaccgtttgcccagagagtagacaaagtgttgtcatggcttgatatggagccttcgaagagaccttatttcatctcattgtacttcaacgaacctgacagccaaggtcacaaatatggaccagaaactcctcaggttaacaaggctataaagaatgtagacgatatgatagggaggctgatagacgggatcgaaagcagaggcctcagctcttgtgtaaatgtcattctcgtttctgaccacggcatggccaacatatcctgctcacgtacaatttatctcgatcagctcatatcattgaacaagaacataagtgttgttggacaaggagcgagttctcttctctatttaaagaaccaagcaaatgttacgaaagttgcaaaagatttaaagtgtaagcataaacatttgaaggcatttgttcgaggagccgatgaaaccccgaagaggattcattatgcaaatagcaaatggattggagatataattctggttccagatcttggatggagtgttctaaagaagaatggctcgtgtaggccatcgtacaaaggaacacatggattcgataacatttatccggaaatgagggcgctgttcgttgcaaatggtcctgcattcaagaaaggacttgttgcacatccatttacaaatattgaagtgtataatctggttgcagagatattgaaactgaagccagcccctaataatggatcatttggtagcctttcgtacatgctcaagaatgcatcaaactcttaccacccgaagacaaatagcgatggcaaggatttctcgatgaaatgcaaattccactgcacaacacagcctcaaaataactgcacgcagtttctttgtccagactgtaacgccacaataaccaagaatatgacaaaatatatgcagcaactaaatttaacaagcaagcaagttgaagagtccatcaaagataagtttccttggggtgctccaaagggtggagctggcaaagatggctgccttttaacccaacgaagttatgtgactggctacagcaattactttcgtattccattatgggtaggatataaactgaaagcaacgcatggcaaaggcaatagccctatcacatcgtgttaccttcatgatccacgactgcgaagaaatgaatctgccagttgcactgcatataatgcatcatcaatgtacaccaaaggacaacttgcacctccaggtgatttcaaagcgaatacaacagaacaacaggatacattcttatcaagtaacattgtgccacagagcagatattttactggaagccaaggtttatggcacaaggctgaagatcttatcagaaaatgggcagtaaagtatggtcagctgtacatcatttcaggatccatattcgactcagatggcgatggatttaaagataaagaaatggacgtaaagagatggctaaacagcaaaacgaaaaccgtcgcaatccctacacacttctacaaaattatcatacgttgcaacaacaaaggcagtaacactactggaaatgccatgatacctggatgcaagggtattttagaggcaatgtcattcattttcccgcacattgagacacccagctgcaagggtcaaaactggaaggagaaccttctacaatacactgcaagcatcaatgacattgaacaattaactggtagcagtttcttctctagcctcccatttccttttgtttctgaatttaaatcctctttaccctcctctctttgggacttccaatgagatgatgattaacatgttatcatagtgatagatagaaacccgcataaaagaacctgtttttataagaacctagaggctgaaattcaatctttaaaaccccctaaataagaacccctaagaggctgaaactgggaaaggttcttatataatagctttaataaacataacctgggtaccagagagtcaatatcgaaaacagtagttggttgaaactaccggtttttgggacaaacatcgtcagtgatgtgtgtgtgtgtgtgtgttaggtaccatcaagtcgctggcgacttctggcgaccctctgaacaaacaatctccattctgttctgttcattgctttttcattaagtttatgcaaggacatcccagttaattctttcaacacatccagccatcttgttctttgcctgcctcgtcagtgatacataatgttaaagttgtcctccaaattgaagcaaatagaaatggaaatttgccataaaaagcaaccagttct

Transcript

scaffold72.g18.t1

CATATGCTGTGTCTGTTGCCACAAGTCAATCTTTTATTTTCCTCTCTTTTGATTGATGTCAACGTAGCCAGATCCTTTCAGATCTCAAAAGAGGAAGTGTAAGTCTTCCAGAGCAAGCCGACCTGCAAAGCGCAAACAGAAAAAGCAGTTCGTCCGAAAATATAACGAGAAAGCAAAAGTCTTCCAAAATGTCGTCAAGAGAGTCACTGGAGGTAACTGGAATGGTACCTACGGAAAAAATTGCAGCTGGTCAGTTAAACAGCAAGAGAATGAAAATCATTGCTATAACTGTTGGCATTTTACTTGTTATTGTGATAACGACAACATTGGCAATTGTATTAAAAGATGATCCAAGCAAGAGTACAATTAAGCGTCCTGTGACTAAACCTGGCTGCAGTAGTTTTGACAAGCAAGCAGTTATTTTGGTGTCCTTGGATGGATTTCGAGCTGACTACTTTGAAAGGAACTTTTCGCCAAATATCAGAAAGCTAGCAACAGAGGGAGTGAGAGCAAAGTATATGAGGTCCCAATACCCAACAATGACGTTTCCGAACCATTATAGTATAGTGACGGGGCTGTATCCTGAGTCACATGGGATTGTTTCTAACACCTTTTTGAATGAAAATCGAAGTGATTTGTTCAGAATTGGTGGGAAAACATCCCAAGAGTCAAAATGGTGGAGAGGAGAGCCGgaatttgatgacgttacatcctcaaatgagttgaaacGTAGAAGACCTGATTATTGGTACAAATACAATGGGAGGGTACCGTTTGCCCAGAGAGTAGACAAAGTGTTGTCATGGCTTGATATGGAGCCTTCGAAGAGACCTTATTTCATCTCATTGTACTTCAACGAACCTGACAGCCAAGGTCACAAATATGGACCAGAAACTCCTCAGGTTAACAAGGCTATAAAGAATGTAGACGATATGATAGGGAGGCTGATAGACGGGATCGAAAGCAGAGGCCTCAGCTCTTGTGTAAATGTCATTCTCGTTTCTGACCACGGCATGGCCAACATATCCTGCTCACGTACAATTTATCTCGATCAGCTCATATCATTGAACAAGAACATAAGTGTTGTTGGACAAGGAGCGAGTTCTCTTCTCTATTTAAAGAACCAAGCAAATGTTACGAAAGTTGCAAAAGATTTAAAGTGTAAGCATAAACATTTGAAGGCATTTGTTCGAGGAGCCGATGAAACCCCGAAGAGGATTCATTATGCAAATAGCAAATGGATTGGAGATATAATTCTGGTTCCAGATCTTGGATGGAGTGTTCTAAAGAAGAATGGCTCGTGTAGGCCATCGTACAAAGGAACACATGGATTCGATAACATTTATCCGGAAATGAGGGCGCTGTTCGTTGCAAATGGTCCTGCATTCAAGAAAGGACTTGTTGCACATCCATTTACAAATATTGAAGTGTATAATCTGGTTGCAGAGATATTGAAACTGAAGCCAGCCCCTAATAATGGATCATTTGGTAGCCTTTCGTACATGCTCAAGAATGCATCAAACTCTTACCACCCGAAGACAAATAGCGATGGCAAGGATTTCTCGATGAAATGCAAATTCCACTGCACAACACAGCCTCAAAATAACTGCACGCAGTTTCTTTGTCCAGACTGTAACGCCACAATAACCAAGAATATGACAAAATATATGCAGCAACTAAATTTAACAAGCAAGCAAGTTGAAGAGTCCATCAAAGATAAGTTTCCTTGGGGTGCTCCAAAGGGTGGAGCTGGCAAAGATGGCTGCCTTTTAACCCAACGAAGTTATGTGACTGGCTACAGCAATTACTTTCGTATTCCATTATGGGTAGGATATAAACTGAAAGCAACGCATGGCAAAGGCAATAGCCCTATCACATCGTGTTACCTTCATGATCCACGACTGCGAAGAAATGAATCTGCCAGTTGCACTGCATATAATGCATCATCAATGTACACCAAAGGACAACTTGCACCTCCAGGTGATTTCAAAGCGAATACAACAGAACAACAGGATACATTCTTATCAAGTAACATTGTGCCACAGAGCAGATATTTTACTGGAAGCCAAGGTTTATGGCACAAGGCTGAAGATCTTATCAGAAAATGGGCAGTAAAGTATGGTCAGCTGTACATCATTTCAGGATCCATATTCGACTCAGATGGCGATGGATTTAAAGATAAAGAAATGGACGTAAAGAGATGGCTAAACAGCAAAACGAAAACCGTCGCAATCCCTACACACTTCTACAAAATTATCATACGTTGCAACAACAAAGGCAGTAACACTACTGGAAATGCCATGATACCTGGATGCAAGGGTATTTTAGAGGCAATGTCATTCATTTTCCCGCACATTGAGACACCCAGCTGCAAGGGTCAAAACTGGAAGGAGAACCTTCTACAATACACTGCAAGCATCAATGACATTGAACAATTAACTGGTAGCAGTTTCTTCTCTAGCCTCCCATTTCCTTTTGTTTCTGAATTTAAATCCTCTTTACCCTCCTCTCTTTGGGACTTCCAATGAGATGATGATTAACATGTTATCATAGTGATAGAtagaaacccgcataaaagaacctgtttttataagaacctagaggctgaaattcaatctttaaaaccccctaaataagaacccctaagaggctgaaactgggaaaggttcttatataatagctttaataaacataacctgggtaccagagagtcaatatcgaaaacagtagttggttgaaactaccggtttttgggacaaacatcgtcagtgatgtgtgtgtgtgtgtgtgttaggtaccatcaagtcgctggcgacttctggcgaccctctgaacaaacaatctccattctgttctgttcattgctttttcattaagtttatgcaaggacatcccagttaattctttcaacacatccagccatcttgttctttgcctgcctcgtcagtgatacataatgttaaagttgtcctccaaattgaagcaaatagaaatggaaatttgccataaaaagcaaccagttct

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01223 all species →	Endonuclease_NS	DNA/RNA non-specific endonuclease	Domain	Interproscan
PF01663 all species →	Phosphodiest	Type I phosphodiesterase / nucleotide pyrophosphatase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020821 all species →	Domain	Extracellular Endonuclease, subunit A	Interproscan
IPR044925 all species →	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR001604 all species →	Domain	DNA/RNA non-specific endonuclease	Interproscan
IPR002591 all species →	Family	Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase	Interproscan
IPR044929 all species →	Homologous_superfamily	DNA/RNA non-specific endonuclease superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10151 all species →	ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01513	ENPP1_3, CD203; ectonucleotide pyrophosphatase/phosphodiesterase family member 1/3	EC:3.1.4.1 EC:3.6.1.9	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.