Gene detail

Detailed information of scaffold72.g28.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold72:465350...494095
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold72.g28.t2

atacttgctgcacagccctctgtgtatcagtatttggactctggctttctttgagaagctgcaagatctgctccaatccttgctggtttggctgccagcctctatcatccatcttcatgttatgatcccgtcttcaaacacctccgttcagcatgagcatgcgggaagagagggagtctggggcgagaacttttccctctcgtgcatatgcatttccataaaggtcagagagcgagctagctacctgggtttcagagaaaattttgcggctttgtttgttttgaattactggttgagagaatttcctttgtctgcgatcgctaatcgctttgaattgaggtgtcaacaaaagcaactcgtgctattgtattacaaaatctgcccttgtttaagagcctgcaaaaaattcctggaaattttcttcaaaaatgctccaaccatctcatcttcatgaacacatagacattgtggaggagcttcgtgacagaattttgggtgcgtccaacaagaattgcaaaatggctgatgctgtggcgagagaaactcttggaagcaatgatgccggctatctcctgtcattgacgctgcttctcaccaagattgctggcatagtagaaaatacagtgaaggagcttcgtgacagaattttgggtgcgtccaacaagaattgcaaaatggctgatgctgtggcgagagaaactcttggaagcaatgatgccggctatctcctgtcattgacgctgcttctcaccaagattgctggcatagtagaaaatacagtgaaggtgcctttctaccatattttacttgaagcaatacttattttatggattattagactcctgaccaggaaaagctacacaccaaaagagcaacgtctcgagctgtcaaaggaggaagaagatgctcttattcaagaatgggaacctgaaccgcttgttccccggaagactatagatgattacatattaaatccaaaagttgtacaagggaaggctggcaaaaggataaacattaatggagaagagtgtcttaacctctctacttttaactttcttggatttgttgggaaaaaagaaattgaggaaaatgcagtaaaaacattgcggaagtatggagttggctcttgtggccccagaggcttttatggcacaattgatgttcatcttcatttggaggagaaaatctccgcgttcttaggaacagaagaagctgcactgtactcctatggtttctctacaattgcaagtgtgattccagcatattccaaacgcactgatatcattttctgtgacgatggtgttggtttcgctattcagaagggaattctggcttccagaagcaaagtctattggttcagacacaatgatatggcagatcttgaacgaaagttgaaagagcaagagcaacgagatattaagaacccaaagaaagctaaggtaacacgaagatttttggtggtagaaggtctctacgcaaattatggagatattgcaccgttgcccaaacttattgagctgaagaagaagtacaaagttcggattattatcgatgaaacgatgtcttttggtgttcttggggaacatggcaaaggcatcacggatcatcataacattccaattgatgaaattgacatgatggctgtctcattggagtcgtctcttgctactgttggtggattttcagctgggacatcctttgtcgtcgaccaccagcgtcttgccggccaaggctactctttttcagcatcactccccccattattggcaacggctgcagattcagcatttgatctgatgaaagagaacccaggaatgtttgcaaaattgagagaaaatgcgacgatgtttaggaaagaacttcaaggtatcactggtctcagtatcgatggagcttccatttcacctataattcacctgcgacttactggcaataatgcggagaaatcacgtgatgagcaagagaaaattctgctagcgttcgtcgacgaggcgtatcaagagaaaattgcattaaccatggcgagatacctcaatgatcaggaaatctatttacctatggcaaggtacaacacgcacaacaactttgtttcctattgacattcccgggtaccttacctgtggcgtttaacttagatggatggtgtacctgtgaaattccatgaaaacaaagttaggagctgcgc

Transcript

scaffold72.g28.t2

ATACTTGCTGCACAGCCCTCTGTGTATCAGTATTTGGACTCTGGCTTTCTTTGAGAAGCTGCAAGATCTGCTCCAATCCTTGCTGGTTTGGCTGCCAGCCTCTATCATCCATCTTCATGTTATGATCCCGTCTTCAAACACCTCCGTTCAGCATGAGCATGCGGGAAGAGAGGGAGTCTGGGGCGAGAACTTTTCCCTCTCGTGCATATGCATTTCCATAAAGGTCAGAGagcgagctagctacctgggtttcagagaaaattttgcggctttgtttgttttgaattactggttgagagaatttcctttgtctgcgatcgctaatcgctttgaattgaggtgtcaacaaaagcaactcgtgctattgtattacaaaatctgcccttgttTAAGAGCCTGCAAAAAATTCCTGGAAATTTTCTTCAAAAATGCTCCAACCATCTCATCTTCATGAACACATAGACATTGTGGAGGAGCTTCGTGACAGAATTTTGGGTGCGTCCAACAAGAATTGCAAAATGGCTGATGCTGTGGCGAGAGAAACTCTTGGAAGCAATGATGCCGGCTATCTCCTGTCATTGACGCTGCTTCTCACCAAGATTGCTGGCATAGTAGAAAATACAGTGAAGGAGCTTCGTGACAGAATTTTGGGTGCGTCCAACAAGAATTGCAAAATGGCTGATGCTGTGGCGAGAGAAACTCTTGGAAGCAATGATGCCGGCTATCTCCTGTCATTGACGCTGCTTCTCACCAAGATTGCTGGCATAGTAGAAAATACAGTGAAGGTGCCTTTCTACCATATTTTACTTGAAGCAATACTTATTTTATGGATTATTAGACTCCTGACCAGGAAAAGCTACACACCAAAAGAGCAACGTCTCGAGCTGTCAAAGGAGGAAGAAGATGCTCTTATTCAAGAATGGGAACCTGAACCGCTTGTTCCCCGGAAGACTATAGATGATTACATATTAAATCCAAAAGTTGTACAAGGGAAGGCTGGCAAAAGGATAAACATTAATGGAGAAGAGTGTCTTAACCTCTCTACTTTTAACTTTCTTGGATTTGTTGGGAAAAAAGAAATTGAGGAAAATGCAGTAAAAACATTGCGGAAGTATGGAGTTGGCTCTTGTGGCCCCAGAGGCTTTTATGGCACAATTGATGTTCATCTTCATTTGGAGGAGAAAATCTCCGCGTTCTTAGGAACAGAAGAAGCTGCACTGTACTCCTATGGTTTCTCTACAATTGCAAGTGTGATTCCAGCATATTCCAAACGCACTGATATCATTTTCTGTGACGATGGTGTTGGTTTCGCTATTCAGAAGGGAATTCTGGCTTCCAGAAGCAAAGTCTATTGGTTCAGACACAATGATATGGCAGATCTTGAACGAAAGTTGAAAGAGCAAGAGCAACGAGATATTAAGAACCCAAAGAAAGCTAAGGTAACACGAAGATTTTTGGTGGTAGAAGGTCTCTACGCAAATTATGGAGATATTGCACCGTTGCCCAAACTTATTGAGCTGAAGAAGAAGTACAAAGTTCGGATTATTATCGATGAAACGATGTCTTTTGGTGTTCTTGGGGAACATGGCAAAGGCATCACGGATCATCATAACATTCCAATTGATGAAATTGACATGATGGCTGTCTCATTGGAGTCGTCTCTTGCTACTGTTGGTGGATTTTCAGCTGGGACATCCTTTGTCGTCGACCACCAGCGTCTTGCCGGCCAAGGCTACTCTTTTTCAGCATCACTCCCCCCATTATTGGCAACGGCTGCAGATTCAGCATTTGATCTGATGAAAGAGAACCCAGGAATGTTTGCAAAATTGAGAGAAAATGCGACGATGTTTAGGAAAGAACTTCAAGGTATCACTGGTCTCAGTATCGATGGAGCTTCCATTTCACCTATAATTCACCTGCGACTTACTGGCAATAATGCGGAGAAATCACGTGATGAGCAAGAGAAAATTCTGCTAGCGTTCGTCGACGAGGCGTATCAAGAGAAAATTGCATTAACCATGGCGAGATACCTCAATGATCAGGAAATCTATTTACCTATGGCAAGGTACAACACGCACAACAACTTTGTTTCCTATTGACATTCCCGGGTACCTTACCTGTGGCGTTTAACTTAGATGGATGGTGTACCTGTGAAATTCCATGAAAACAAAGTTAGGAGCTGCGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR050087 all species →	Family	8-amino-7-oxononanoate synthase class-II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13693 all species →	CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0004758 all species →	Molecular Function	serine C-palmitoyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0046512 all species →	Biological Process	sphingosine biosynthetic process	Interproscan
GO:0046513 all species →	Biological Process	ceramide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold72.g28.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.