Gene detail

Detailed information of scaffold73.g70.t1 in Morbakka virulenta

Genomic Location: scaffold73:2688286...2736797
NR annotation: KAJ7394471.1, hypothetical protein OS493_000282 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold73.g70.t1

AGTTAGTGCACATAAATACTTAGCTAGGAGCCATGCTGTCTGCTACAGAGCTCTTGTCCATTGTAAATGGAAGGTCCTCAATTCTTGATCCAGCGGAAATAAAAAAGCAGTTGAATTTTGCTAAAGATAGATTGTTAAAAGGAATAGATTTTTTCAATCCACCAAGTAAAGAGTCAGAAGAGAAGTTAAAAAATGATAAAAGCGTAAAGAAAGTTGACTTTATACTGAAATTAAGCAAACTTTTGGACATAGATGAATTGCAGTGTTATCACTTGTTTCAAACGTACATTAGAACAGATTTTAGGGGATCCTCAGCGCAGCTTTTGAAAATTCTTCGCCATGATCTAGAAGTTGAAGATTTAATTGTCAAGGTAACAGAATTTTATCACAAAGAACGTTCTGCACTTCTCATTTGCCTGAAGCATATATTCGGATACTGGCAGAATGAAGTGTGCCTTTTCAGGGATCAGTTTGCAGAATTGGTCGAAGAGCTGGTTGGACTTGGCTTTATTGATAAGATACTGTCGCAGTACAAAAAAATATGCGCAAAAGCTGCAAATCACAATGGAAAAATTAATGACAAGAATGTTCAAATGTTATTTGCTCGTCAATACGTCAAAGAGCAGGCTGATTTACTTGAAATTATGCTTCTCTATCATATGGAGTTTGACATGGATGCTGGAAGAGTTTTAAGTCTTGCCAAGATATTTCAGGGACAAGCCTTTGGATTAAAGCAACTGAATAAGATATTTCTTGACTCGTCTTACAATCAAGTAATAGATAGAATCGGCTACTTACAATCTCTCATTTTGATGGCGGCAGTTGATTTAGAAATGTTAAAAAAAATCCGAGGTGGAGAAAGATCATCACAGGATCATCATCTTTTAACAAATGCAGATAAAGCACAGGAGCTTGATGATTTGTTTAATACATGGGGCGAGTTGGCTGCACATGGGCCACCACTTTTGGGATGGGTCGTGTTCAGATTCATTGCACTTGAAGGTGAACAGGAAGAGGTAACTCGCAGGCTTGGACAGATAGCTTTAAAGTGCAACGTATTTCAGTATCTTCTCGGTGTTTTAAAGGATGGTCTCTTTAGTGCGCCACTGCCAGCTGGAAATTTTTGCAAGAAGCTGGTTTATTCTTTAATGGATTTAATGCTTTCATTGTTTCACGAAGACACAATTGGTAGTTTTCAGGTTCTTCTGTCCGTTGCGCATGAAACACTTTCAGAACCCCATACTGCAATAGAATTTTGGGCCTCGGATAGTAACAGCGGAATGCACATGTTTCTTAAATCCACGAAAAACAGATTTCCTTATCTTCTTCGCCCACTAATTGATTTGCTGGTTTGCCTTTGCAAAGATGAACAAACAGCTGAACAGGTTTATCATTATTTGTTTACCCTGAAAAGTTTCACGGAACTTTTCGGTAAAAATAGAGTTGATGAAATCTCCGCGACCGAAGACGTGACGGTGTGGAAGCGAAACATGGATCATTTTATAATAGGAAATGACGATCACAAGATAGTGGTCCCAGCAGGAACATTTGGAAGACTATTTCAGGTTGCTGATGATATTCGTCTGATTCGATGGAATTATTCCTACTCTGGATGGCTTTTCCTGGCTCTTGAAATGCAACAGTTCCTGCTACGCCCCTACGATGGAGAAGATGGTGAGTCTGAAATAGAGCGTGTCAAAAGCATAATAAATCTCCTCACTGCCGTTATCAAATATAATTGGAGTTATTCTGTTACACTAGACATTTTGGTTGGTGGGACAATTTCAGTTATTGACAGAAAGATTTGCAGTAAGGAATCATCAAACTTCCACTGTTTATTATCGAGTCAAAGTTCATCACGTGGTATTTTTATCCCTTAGAAAGCTGCATTAACTTCCATTTATTACTTAAGTAATTTGACTTAATGGCTTATCGTAAATATCATGAAACCGTATACTTTCTTActcctcctcctcaggtgccgtgtccaggaacgttggcgatcatggctctccacagatctctgtccttcgctgccctcagtagttgtagctcgctctttgtagaccatgctgcaatactgcccatgtacttggttcttggtcgtcctctgcctcgtttcccatctatctttcccgtcagcgtcaactcctcaagctcttctttcctcattatatgtcctaggaaggacagctgcctttttggaatggtggacaacagctttctcttgcatcctgctctcctcaaaacatcttcattcgtaacgtgttctgtccaagaaatccgcagtattcggcgtagaaaccacatttctgcagcttctagcttcttttcgagggttgctgtgatggtccaactttcactcccgtatgtaagcactgggattacgtaacagttgaggactcggagcctggtgttcaaggaaatagtttggtttttcagtatcttagacattcgctggaataccccctttgctgtggcaattcgtttccgtatttctaccatgcatcttccatctgatgtaatcatgctgccaagataattaaacttatctacttgttgaatgtcttctccatctattgatattttgcagctcaaattctcattccttttgctaaccgtcatgcaaaaagtcttccgacgattgatactgagaccccttgccccactttcctctacaacggtgtcaagcagttgttgtagcttctctggagtgtcggctatgagcgtcgtgtcgtcagcatatcgtatattattcaagttgtaccctccgatcacaaaaccatgttttccctcgatacttctcatgatgttttcactgtatagattaaataggtctggtgagaagacacaaccttgtctaacacctcttcgaatattgcagtatttaccaacctcgttctgcactctcacacccgcagtttgctcccagtataagtttcttatgagtcttatatcttttccatctatgtctagatcttgtatcatttctatcatacactcgtgtttcactttatcaaatgcttttgagtagtcaatgaaacacaggtatagatccctctgcatttcgatggctcgttccgacagcatcctcatcacaaatatagcgtttcttgttccagcatcttggacaaaaccaaattgctgtttccctatctctggcctcattgctctccttgctcttgccattatgactcgcataagtatcttagttatatgactcattagactgatggttcggtggagctcgcactcggtagcccctggtttcttgggcagggcgatgaatacagattttgttaaatc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10487	Nup188_N	Nucleoporin Nup188, N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018864	Domain	Nucleoporin Nup188, N-terminal	Interproscan
IPR044840	Family	Nucleoporin Nup188	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31431	NUCLEOPORIN NUP188 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0006606	Biological Process	protein import into nucleus	Interproscan
GO:0044611	Cellular Component	nuclear pore inner ring	Interproscan