Gene detail

Detailed information of scaffold75.g29.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold75:465888...471848
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold75.g29.t1

ctctacctgggatcgaacccggtccacctgactgtttacgctgcagtgtcagaggattacaccactgcgccacaacacctgtcttctttcgttctttcgttataaacccatgactcctcttaaaaatacctttcgcgtgtacaagatgacaatttgctcactggtttcagggactcttttacggcgttgtttgttttgaattactggtttcctttgtctgcagtcgctaatccctttgaaatccagtgtcaatcaaagcagctgatgctattgtgttacaaaatctatccttgttggtatctgctcctcttatttttgtaagaattatttacaccatacaagtcgcgtttactcttctaaagttttatttatcaaagtatcaaaaagatgttgacgtattgtagttttgtagattgtaatatggtgatgtcaaactttgaaactattatgaaattcggcctaaaagagaacagcagtgctacgagtcggcgaaaataatagcaagtagaactgatttaaattttgaaaatagctactatgaaatcatcaggctgaatgagggacatcttaaaagaacagaattgtgcatagtcgagcaagtttataagagctttaatgtctatttaggtctgtgagagctctattgcgcttttgggaaaatactgaggcagtcaaagtgaaattttggtcttgattttaggcccgttctaaagacttcttgaaagagctttcttgaggaattccctcataacttcagataattttaaaatttatttgaacatgtcctctatggatttatatacttcctaatatcattgctttgatatttaggcagcagtggcctttcaaacggcgaatgttttttgcctcatttggtattaaagtaatttttagctgtttagatttcataaagtttcaaggtttgatgttatatcattgaattgcctgttcggaactgaatatcaacgggctttgaacccccgacagtagagtggaaggatctttgtctctccggagcacttccccaacatttttgtctcgttgaaagttgttttcgttttgctcggccaggcaaaagacgggttaaaaaagaccaaccaagccatactcaaattacattcatttccgagcagatttttatttttatattttctgttcccttagccgtttttggattaatgaaggacttattacattagtcttagtttccgcatttccatgttgctgtaaatgcaaaaactgcttaaattgagctagagactcgagtgataagtccaaaaatacatttgctgttgtatatatattttagcgttttatggggatcacccaattatacgttttagatgtatgagagcgtatttaatactgtcgcgggttggcagtttgagaagaaattttgggtagaatttagcgtagaataaacagctgtttaaccctaatattttaacacgatgtttttgtatgttcagtatgaaacgtatgtggcgtaaagggatttctcaatgagaaatgagaagattttatttaaccagatgcaagtccatttcgttcgtgatggaaagcattggaaaggaatgcagcgaattcaagcaagaatatgatgcttgttttaataaatggtatgccgaaaaattcttaaaaggggatgttgatactgccactgaaactgtgccatgtgctgaactgtttaatacttataaagagtgtgttgtgaaagcaatgaaggaaaagaatattaattttgatgacgtgatgaaacaagtgctggacactgaagaggagcagaagacacctgaatgaaaattggtatttctgacaataagaagaccaccagattttatttcaacctgtgttgaaaaaaaagaacacaaagaaaggtcaaacgaagcatgcaaattggcacaaagtgtttttaagcattgattttttacattgagcagtggcacaggaaaaccgtttttgcacaatgaccaaagaaaagtgtcacacagtgaggaaaatagaaatttgtaccagtttcatacagacctttgaagatgagctgattgatatctgatctagacttgactccaagcaaatattttgatttttatgaatgattgaattattgttttggaatgataattaaaagtgaaaaataaccaaaaaaagtctgtcaattactctttttgatgctttctatatctaatatatttaatgctaaatttcagcacccttttgtgtggatagtcaataattgtatatttatatgtcaagaagcatgtctcaagaagcactacaaagtactgggatttttgaaggggctttctgcagaaaatcacccatatccacggaaaggaatggccgattaaggccgggtaaattactgaacctaattgaacatattggcaataaaacaagacatttttcaatattattgctttgatattcatggagcagtggccnnnnnnnnnnnnnnnnnnnnnncccccaactttagaaaaattatcgaaaatgagccccaatcgggcaaaaaaatgccctcagtcgggcaaaaattatgctaaacaatggactttgtgttgggcagcccccctagattttttcttcccgtacgcttatgccaagtggggatcctttttctgactcacctggtagttcatgtgctcaaaagataagaaagaaattaagaaatt

Transcript

scaffold75.g29.t1

ctctacctgggatcgaacccggtccacctgactgtttacgctgcagtgtcagaggattacaccactgcgccacaacacctGTCTtctttcgttctttcgttataaacccatgactcctcttaaaaatacctttcgcgtgtacaagatgacaatttgctcactggtttcagggactcttttacggcgttgtttgttttgaattactggtttcctttgtctgcagtcgctaatccctttgaaatccagtgtcaatcaaagcagctgatgctattgtgttacaaaatctatccttgttGGTATCTGCTCCTCTTATTTTTGTAAGAATTATTTACACCATACAAGTCGCGTTTACTCTTCTAAAGTTTTATTTATCAAAGTATCAAAAAGATGTTGACGTATTGTAGTTTTGTAGATTGTAATATGGTGATGTCAAACTTTGAAACTATTATGAAATTCGGCCTAAAAGAGAACAGCAGTGCTACGAGTCGGCGAAAATAATAGCAAGTAGAACTGATTTAAATTTTGAAAATAGCTACTATGAAATCATCAGGCTGAATGAGGGACATCTTAAAAGAACAGAATTGTGCATAGTCGAGCAAGTTTATAAGAGCTTTAATGTCTATTTAGGTCTGTGAGAGCTCTATTGCGCTTTTGGGAAAATACTGAGGCAGTCAAAGTgaaattttggtcttgattttaggcccgttctaaagacttcttgaaagagctttcttgaggaattccctcataacttcagataattttaaaatttatttgaacatgtcctctatggatttatatacttcctaatatcattgctttgatatttaggcagcagtggcctttcaaacggcgaatgttttttgcctcatttggtattaaagtaatttttAGCTGTTTAGATTTCATAAAGTTTCAAGGTTTGATGTTATATCATTGAATTGCCTGTTCGGAACTGAATATCAACGGGCTTTGAACCCCCGACAGTAGAGTGGAAGGATCTTTGTCTCTCCGGAGCACTTCCCCAACATTTTTGTCTCGTTGAAAGTTGTTTTCGTTTTGCTCGGCCAGGCAAAAGACGGGTTAAAAAAGACCAACCAAGCCATACTCAAATTACATTCATTTCCGAGCAGATTTTTATTTTTATATTTTCTGTTCCCTTAGCCGTTTTTGGATTAATGAAGGACTTATTACATTAGTCTTAGTTTCCGCATTTCCATGTTGCTGTAAATGCAAAAACTGCTTAAATTGAGCTAGAGACTCGAGTGATAAGTCCAAAAATACATTTGCTGTTGTATATATATTTTAGCGTTTTATGGGGATCACCCAATTATACGTTTTAGATGTATGAGAGCGTATTTAATACTGTCGCGGGTTGGCAGTTTGAGAAGAAATTTTGGGTAGAATTTAGCGTAGAATAAACAGCTGTTTAACCCTAATATTTTAACACGATGTTTTTGTATGTTCAGTATGAAACGTATGTGGCGTAAAGGGATTTCTCAATGAGAAATGAGAAGATTTTATTTAACCAGATGCAAGTCCATTTCGTTCGTGATGGAAAGCATTGGAAAGGAATGCAGCGAATTCAAGCAAGAATATGATGCTTGTTTTAATAAATGGTATGCCGAAAAATTCTTAAAAGGGGATGTTGATACTGCCACTGAAACTGTGCCATGTGCTGAACTGTTTAATACTTATAAAGAGTGTGTTGTGAAAGCAATGAAGGAAAAGAATATTAATTTTGATGACGTGATGAAACAAGTGCTGGACACTGAAGAGGAGCAGAAGACACCTGAATGAAAATTGGTATTTCTGACAATAAGAAGACCACCAGATTTTATTTCAACCTGTGTTGAAAAAAAAGAACACAAAGAAAGGTCAAACGAAGCATGCAAATTGGCACAAAGTGTTTTTAAGCATTGATTTTTTACATTGAGCAGTGGCACAGGAAAACCGTTTTTGCACAATGACCAAAGAAAAGTGTCACACAGTGAGGAAAATAGAAATTTGTACCAGTTTCATACAGACCTTTGAAGATGAGCTGATTGATATCTGATCTAGACTTGACTCCAAGCAAATATTTTGATTTTTATGAATGATTGAATTATTGTTTTGGAATGATAATTAAAAGTGAAAAATAACCAAAAAAAGTCTGTCAATTACTCTTTTTGATGCTTTCTATATCTAATATATTTAATGCTAAATTTCAGCACCCTTTTGTGTGGATAGTCAATAATTGTATATTTATATGTCAAGAAGCATGTCTCAAGAAGCACTACAAAGtactgggatttttgaaggggctttctgcagaaaatcacccatatccacggaaaggaatggccgattaaggccgggtaaattactgaacctaattgaacatattggcaataaaacaagacatttttcaatattattgctttgatattcatggagcagtGGCCNNNNNNNNNNNNNNNNNNNNNNcccccaactttagaaaaattatcgaaaatgagccccaatcgggcaaaaaaatgccctcagtcgggcaaaaattatgctaaacaatggactttgtgttgggcagcccccctagattttttcttcccgtacgcttatgccaagtggggatcctttttctgactcacctggtaGTTCATGTGCTCAAAAGATAAGAAAGAAATTAAGAAATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05254 all species →	UPF0203	Uncharacterised protein family (UPF0203)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007918 all species →	Family	Mitochondrial distribution/morphology family 35/apoptosis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46403 all species →	TP53-REGULATED INHIBITOR OF APOPTOSIS 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005758 all species →	Cellular Component	mitochondrial intermembrane space	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0045332 all species →	Biological Process	phospholipid translocation	Interproscan
GO:1990050 all species →	Molecular Function	phosphatidic acid transfer activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17968	TRIAP1, MDM35; TRIAP1/MDM35 family protein	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.