Gene detail

Detailed information of scaffold75.g64.t1 in Morbakka virulenta

Genomic Location: scaffold75:2712663...2761307
NR annotation: XP_048577312.1, dystrophin isoform X4 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold75.g64.t1

AACAAACCTGACTGCAGCATATCCATTTACAAAAATTTCCTAGCTCACGCTTGATTGAAGTTTGGCTTTACCTCAGTTGTGAATCACACCCAATAATTTAGTATGTACACAAAACTCCAGGCTTCTTGGAACGGTAGGAAGTGTGTGCGTGACTATCAATGCGAAAAACCGTCATTTTTTCAAGGAGATTTTATTTTTTCCTTCGTGTAGGTTAATCTTGTGGCACATGTAGGCTAAGATATTGCAGCACGTTCCTGTGAAAAGTTAGAACATCAAACTTGTTTTCTGAACCCGTTGGGATTCATCAGGAAAGCACTTAGTGCCAATGCGTGATCAGACGGGAGTACTTAAAGGCCACTATTAATTAGTCAGTCATTTTCACAGAACCAAGTTAAGATTAATTGGTTTATAATTTGGTTACCGATTTCCTGCGTCTTCAAGGCATGGCTTCCCCTGGTGCTCCAAGTAAAAGTGGGCTCTCAGACGAAGACGGCGAATTTCAAATACTGCGGAAACAAAGGACAGATGAACGAGCAGACACACAAAAGAAAACATTTGCAAAATGGATAAATTACCAGCTTGAAAAAGGGGGGAAAGATGTCGAAGTTTCAGATCTCGTGAAGAGTTTACAGGATGGCACTGTGTTGCTTGGCCTGTTGGAAGTTCTGACGGGGAAACGATTGAGACGAGAACGTGGTCGAATGCGGTTGCATATGCTCAATAATGTGAACAAAGTTATCCAGACATTAGAGGAGCACAACGTGAAATTAGTCAACATTTGTAGTGACGATATCGTAGATGGAAGATTTTGATGTCGACtcttcttcttcttcttcatctttcggctgctcccgtcaggggtcgccacagcggatcaatcgcctccatttggcgcggtcgtcagcgtcctctctcctcactcctaatgtcctcatatcctcttcaattccgtccatatatcttctctttggtcttcctctcttcctcttccctggcagttgcatcctcaacattctcctcccgatgtagctatcttctcttctgaccacgtgtccgtaccatctcagtcttccttccctttgcttctctcctaatcttctaacgtgtgctgttcctctgatgttttcatttctgattttatctagctgtgtgaccccaagtgaccacctcagcattctcaactcagccacttccaactcagcttcctgcttctttgttgtcgctaccgtctcaagcccatatagcaaagctggccgcactaccgttttgtacacttttcctttcacttttggcaatatcttccggtcacataacacccctgttaccttcctccacccgttccagcctgcttgtatcctcttcttcacttctctgtcgcatcccccatcgtattgcactgtggatccaaggtacttgaagtcttttgccttcattacatctgctccttgcatgcaaatcttgtcatcctctctcccattcacgaccaggtattcggtcttggccctgcttaccttcattccccttctttctagggcatatctccactcctccagttcttcttcggcctcgttcctggttttgttgcacagcacaatatcgtcagcaaacagcatactccatggtgcttctttcctgacttcatcagtgagtcgatccatgactattgcgaataggaaggggcttagagctgacccttggtggagtccgaccttgactcggaaccagtcagtcattcctgcagcacttcttacagccgtcgcactgtctttgtacatgtcttttactagccttacatacttttctgctactctggatgttctcatgcagtgccataattcctctctaggtaccctatcatacgctttttccaaatccacaaacacgcagtgcaattccttttgtccttctctgtgcttttccatcaggatgcgcagagcgaataacgcatctgttgtgcctcttcctggcatgaaactgtactgttccgggctgatctctacttcctctctcatccttgtatccaaaactctctcccacaacttcatagtgtggcacatcaacttgatgcccctgtagttgccacactcttgtgcatctcctttgttcttatatatagggatcaacacactcctcctccattcgcttggcatttcctctttctccagtatcctattgaagagcttcgtgagcacctctaaacccatgtcacctagacacttccatgcttcaattgggatgttgtctggccctacactctttccatttttcattttcttcaatgccttctttacttcacctttgtctatctttccaacatcgcgttcaactctctgggcttcttcaattctttcttctctgggattttctgtgttcatgaggccttcaaagtaacttttccacctttctaacacttcattctcatctgttaacagtcttccatctgcatctttgatgactctaacctgttgaatatcctttgaagctttgtccttttgcttcgcaatccgaaataaatccttttctccttc

Protein

Uniprot

Uniprot term	Description
Q9VDW6	Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster OX=7227 GN=Dys PE=1 SV=3
D3ZHV2	Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus OX=10116 GN=Macf1 PE=1 SV=1
Q9QXZ0	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4 OS=Mus musculus OX=10090 GN=Macf1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001715	Domain	Calponin homology domain	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan
IPR052403	Family	LINC complex-associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47535	MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005640	Cellular Component	nuclear outer membrane	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007097	Biological Process	nuclear migration	Interproscan
GO:0034993	Cellular Component	meiotic nuclear membrane microtubule tethering complex	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan