Gene detail

Detailed information of scaffold76.g6.t5 in Aurelia aurita

Genomic Location: scaffold76:82516...97970
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold76.g6.t5

gctgaaaataagatcgcagaaagtgaatcgaagaggtcaagtataacatcagtagttcttggcaaatattccttttaagttcttaagtaggtatgcagagcggtagaattcaaactgtagaaggtaaatctggctccagaagagtctaggaccaccaccgaagttgttttgcttctcaacaaatctgctgctaagaggagttggagagtaggcctagcaaaaagcacccctagccactgatactggatagctcacaaagctgctgtaactgcttccttgaagatgcttcgattagcagtaggaactgctgcattttcagttggagcctttggtgtcgtgaaagcaaagactgcaattgaaagggcaaacaatcaatctagtcttctggagactacagtgggtgcacctttaccaaacagtcttctggagactacagtcggtgcacctttaccaaacagggctgatttgttgaaggatctgaaaactacacctgaatatgatgttcttgttattggtggaggagcgacaggagctggagttgcgttggatgctgtaacaagaggactgaaaacagcattagtggaaaaatatgactatgcttgtggtacaagtagcagaagcacaaagttgatccatggtggtgtacgctatctgcagaaagcaatatttaacctggacattgaagagtacaagctggtaaaagaagcacttcatgagagagcaaatcttctgcaaattgcaccacatctgtcagatccactaccaatcatgcttcctgtttacaaatggtggcaagtaccttatttctgggctggtatcaagatgtatgacttggttgctggaagaaaacttgtaaaaagcagttactttgtaaacaaagaaaaggcattggaactatttccaatgcttaaaagcgaaaatctttgtggagccatcatttattacgatggtcaacataatgacgcaagaatgaatttggcgattgctttgactgcaataaaacgaggtgcaacatgcgtgaatcacgtggaggtggaacaacttttaaaaaagaaaattagagatgaaaacgatatcgaaaaagaggttgtttgtggagctcgagtacgagacagggtaactggtgatgaatgggatgttcatgctaagtctgttatcaatgcaactggccccttcacagatagtgtgcgacggatgggagatgagaaaacgccaaagatttgtcaagctagtgctggtgtgcacatcgtccttccttcttattacagtcctaaccacatgggcttgctggatcctgcaacaagtgatggccgagtcatcttctttctcccttgggaaggcaaaactattgccggtactactgatgccccgtgcgatgtcacgttttcaccagcaccgcgcgaaaaagaagtcgaatttatattgaacgaaatcaagaattatttgagtccagatgttcatggtaatcctaaccacatgggcttgctggatcctgcaacaagtgatggccgagtcatcttctttctcccttgggaaggcaaaactattgccggtactactgatgccccgtgcgatgtcacgttttcaccagcaccgcgcgaaaaagaagtcgaatttatattgaacgaaatcaagaattatttgagtccagatgttcatgttcgaagaggcgacattctagcagcatggagtggaatacgccctcttgtgaccgacccatcctctcaagagacaaaatcgatttcccgaaaccatgtcatcgaagtcagcgataacaacttgataacaatagctggagggaaatggacaacatatcgagcaatggcgaaggatactgtcgatgctgctaaaaaacactgtaatttaaaggctggagaaagccagacagacggcctaatgcttgaaggagctgatggatggacgcctacgttctttattcgtttggtgcaagattttggattagagccagaggttgctacgcatttatcaaaatcatatggcaacaatgcacctcaagttgccaaacttgcgaagctgacaggcaaaaggtggccagttgttggacaaagactaattgatgaatttccatacattgaagctgaaattctgtacgggatacaggaatatgctctcacggccgttgacatgatcgcaagaaggttgaggatagcttttctcaatgttcaagctgcagatgaaatactaccaagagttatagagattatgggaaatgaattaggatgggacgaaactaaacgtgtgcatgagctgacaatggcgcgaatgttcctcgacaacatgggatacatgaataaagtgaatattcgagatgttccattagacttatcggagaaggagctggaaagatataagaaagttttccatacttttgatgccgataattcaggtcatttgacggttatctcattacgcaaggtattcgaatcgcttggagatatcacattttctgatgaacagttacgaagtctaatacatgaagttgacttggatatgagttctacgatcgacttagaagaatttctaaagcttgtcagtgcgttgaaatcgggtaccgtttcgaacagtcgtctaggcactcttgtcaaaagacaatatgaagaaatgtttcaaaccattccaacagaacggagtggtggcggagtgtgataaagtggtaacatggaagtagtacgtaagaaatttattttatactcaagttgataatttgtgaataacccattctcaatttaggtttaatagtttttcgttattttttaatcgctagctgaatttcaggttttgccatatttatttcagtataccgggcgagtcaagaaagatatccacagttagaataatcgtactgcaaaaacaccctaagtcccaactgatttgaagcattgcctgactgaagctaatcattagactcaatacatggcggagtttcgctctttgactgcactgataacgctacaacctcactgcagcgataacaacaacagcaattcaatgagatgagatgagcgtaagttgagggcctcatgcagtgaggctagctaatcataagtgtttatttataatttacaatacactatttcactctcaatacacaataacgctaaagatggcggccgcgcaaagcatgctggtaaaaagctccctgacaaccatctaacgacataaaaatgttggtctgccgttttgactagctagctgtggtaagttcggaagaaataatcaatgtaaacaaataggaaaatttcgtaattcaaacgcgaatctttaattaaaacttcaattcgaatttaggtggtcgtcagggagctttttaccagcatgctttgcaccaaaacacaacagagtctttggagccgccatctttagcgttattgtctattaaggaatttcccgaaaaagggctttttggctaaaactatcagtaaatggatcaatattaattccattttcaactattgaaatggtacttattgtttttctcggctcaaaaccgtaagaaatatgatttcaggctaaatgctcatttcagagagaaacaacacgtctagaattaagcgaaaggtcccaaaaattgtggttgaagccttagtgaggcgatgtatgtaaaattttacaacttgttttcatgctttttgtattacgatttgcagacatttaaagggatacattttcggactcactcggtagatgtgcgaggtctcgtcttgaattaacgacttttctcgatgaaatatcgctcctctcaagttacgagagatttaatgaaatgtttaatcgcggaatccttcaaaacagatctagaatctttgatcaaatttgtcaaaaagcaggcaattcgtctttaaaaacttaagcaacttgttgtgtagatgaagactaaatggcgttacgctcaaaatatgttttttgagtagttctgaccaatgcaataacagtaataccagaataatctcatcagcgtgcagaggacagtatgaccactgcgagggaggaaattgtggagatggacgctacttgtttctccttcgcagcttcctccttcgcagctcatagtagacacagaccagcctggttcctagtcgtcgatgttgcggaggagacaaacgcgtttttttgttgagaaaaagggttgaattatgaaggagaaggaagagctcaacatttgagacctcttccctggagtccagtccccttagtcgaaagtgacgtcagggaaccagactggacacagacattgacatctggaaggctagatgtgtagattcttcaagtattcactgttttccagtgttgttgttgctatagtatttttcgttgtggaaatttcgttgacacagaatagattaaatctaccaaaaaaaggaaattgtcataatgtccttcgcgcactgatgagcgacgaaatagacttggagcaagtctatcataggactagtgtccttttaactcgtttcatataaaaacatttagaaacttttttcgtagagctcttttcaggattatgccttactgtcttgtattgtagacatattcgatacgcattcataaattcttcaacgatat

Transcript

scaffold76.g6.t5

GCTGAAAATAAGATCGCAGAAAGTGAATCGAAGAGGTCAAGTATAACATCAGTAGTTCTTGGCAAATATTCCTTTTAAGTTCTTAAGTAGGTATGCAGAGCGGTAGAATTCAAACTGTAGAAGGTAAATCTGGCTCCAGAAGAGTCTAGGACCACCACCGAAGTTGTTTTGCTTCTCAACAAATCTGCTGCTAAGAGGAGTTGGAGAGTAGGCCTAGCAAAAAGCACCCCTAGCCACTGATACTGGATAGCTCACAAAGCTGCTGTAACTGCTTCCTTGAAGATGCTTCGATTAGCAGTAGGAACTGCTGCATTTTCAGTTGGAGCCTTTGGTGTCGTGAAAGCAAAGACTGCAATTGAAAGGGCAAACAATCAATCTAGTCTTCTGGAGACTACAGTGGGTGCACCTTTACCAAACAGTCTTCTGGAGACTACAGTCGGTGCACCTTTACCAAACAGGGCTGATTTGTTGAAGGATCTGAAAACTACACCTGAATATGATGTTCTTGTTATTGGTGGAGGAGCGACAGGAGCTGGAGTTGCGTTGGATGCTGTAACAAGAGGACTGAAAACAGCATTAGTGGAAAAATATGACTATGCTTGTGGTACAAGTAGCAGAAGCACAAAGTTGATCCATGGTGGTGTACGCTATCTGCAGAAAGCAATATTTAACCTGGACATTGAAGAGTACAAGCTGGTAAAAGAAGCACTTCATGAGAGAGCAAATCTTCTGCAAATTGCACCACATCTGTCAGATCCACTACCAATCATGCTTCCTGTTTACAAATGGTGGCAAGTACCTTATTTCTGGGCTGGTATCAAGATGTATGACTTGGTTGCTGGAAGAAAACTTGTAAAAAGCAGTTACTTTGTAAACAAAGAAAAGGCATTGGAACTATTTCCAATGCTTAAAAGCGAAAATCTTTGTGGAGCCATCATTTATTACGATGGTCAACATAATGACGCAAGAATGAATTTGGCGATTGCTTTGACTGCAATAAAACGAGGTGCAACATGCGTGAATCACGTGGAGGTGGAACAACTTTTAAAAAAGAAAATTAGAGATGAAAACGATATCGAAAAAGAGGTTGTTTGTGGAGCTCGAGTACGAGACAGGGTAACTGGTGATGAATGGGATGTTCATGCTAAGTCTGTTATCAATGCAACTGGCCCCTTCACAGATAGTGTGCGACGGATGGGAGATGAGAAAACGCCAAAGATTTGTCAAGCTAGTGCTGGTGTGCACATCGTCCTTCCTTCTTATTACAGTCCTAACCACATGGGCTTGCTGGATCCTGCAACAAGTGATGGCCGAGTCATCTTCTTTCTCCCTTGGGAAGGCAAAACTATTGCCGGTACTACTGATGCCCCGTGCGATGTCACGTTTTCACCAGCACCGCGCGAAAAAGAAGTCGAATTTATATTGAACGAAATCAAGAATTATTTGAGTCCAGATGTTCATGGTAATCCTAACCACATGGGCTTGCTGGATCCTGCAACAAGTGATGGCCGAGTCATCTTCTTTCTCCCTTGGGAAGGCAAAACTATTGCCGGTACTACTGATGCCCCGTGCGATGTCACGTTTTCACCAGCACCGCGCGAAAAAGAAGTCGAATTTATATTGAACGAAATCAAGAATTATTTGAGTCCAGATGTTCATGTTCGAAGAGGCGACATTCTAGCAGCATGGAGTGGAATACGCCCTCTTGTGACCGACCCATCCTCTCAAGAGACAAAATCGATTTCCCGAAACCATGTCATCGAAGTCAGCGATAACAACTTGATAACAATAGCTGGAGGGAAATGGACAACATATCGAGCAATGGCGAAGGATACTGTCGATGCTGCTAAAAAACACTGTAATTTAAAGGCTGGAGAAAGCCAGACAGACGGCCTAATGCTTGAAGGAGCTGATGGATGGACGCCTACGTTCTTTATTCGTTTGGTGCAAGATTTTGGATTAGAGCCAGAGGTTGCTACGCATTTATCAAAATCATATGGCAACAATGCACCTCAAGTTGCCAAACTTGCGAAGCTGACAGGCAAAAGGTGGCCAGTTGTTGGACAAAGACTAATTGATGAATTTCCATACATTGAAGCTGAAATTCTGTACGGGATACAGGAATATGCTCTCACGGCCGTTGACATGATCGCAAGAAGGTTGAGGATAGCTTTTCTCAATGTTCAAGCTGCAGATGAAATACTACCAAGAGTTATAGAGATTATGGGAAATGAATTAGGATGGGACGAAACTAAACGTGTGCATGAGCTGACAATGGCGCGAATGTTCCTCGACAACATGGGATACATGAATAAAGTGAATATTCGAGATGTTCCATTAGACTTATCGGAGAAGGAGCTGGAAAGATATAAGAAAGTTTTCCATACTTTTGATGCCGATAATTCAGGTCATTTGACGGTTATCTCATTACGCAAGGTATTCGAATCGCTTGGAGATATCACATTTTCTGATGAACAGTTACGAAGTCTAATACATGAAGTTGACTTGGATATGAGTTCTACGATCGACTTAGAAGAATTTCTAAAGCTTGTCAGTGCGTTGAAATCGGGTACCGTTTCGAACAGTCGTCTAGGCACTCTTGTCAAAAGACAATATGAAGAAATGTTTCAAACCATTCCAACAGAACGGAGTGGTGGCGGAGTGTGATAAAGTGGTAACATGGAAGTAGTACGTAAGAAATTTATTTTATACTCAAGTTGATAATTTGTGAATAACCCATTCTCAATTTAGGTTTAATAGTTTTTCGTTATTTTTTAATCGCTAGCTGAATTTCAGGTTTTGCCATATTTATTTCAGTAtaccgggcgagtcaagaaagatatccacagttagaataatcgtactgcaaaaacaccctaagtcccaactgatttgaagcattgcCTGACTGAAGCTAATCATtagactcaatacatggcggagtttcgctctttgactgcactgataacgctacaacctcactgcagcgataacaacaacagcaattcaatgagatgagatgagcgtaagttgagggcctcatgcagtgaggctaGCTAATCATAAGTGTTTATTTATAATTTACAATACactatttcactctcaatacacaataacgctaaagatggcggccgcgcaaagcatgctggtaaaaagctccctgacaaccatctaacgacataaaaatgttggtctgccgttttgactagctagctgtggtaagttcggaagaaataatcaatgtaaacaaataggaaaatttcgtaattcaaacgcgaatctttaattaaaacttcaattcgaatttaggtggtcgtcagggagctttttaccagcatgctttgcaccaaaacacaacagagtctttggagccgccatctttagcgttattgtctattaaggaatttcccgaaaaagggctttttggctaaaactatcagtaaatggatcaatattaattccattttcaactattgaaatggtacttattgtttttctcggctcaaaaccgtaagaaatatgatttcaggctaaatgctcatttcagagagaaacaacacgtctagaattaagcgaaaggtcccaaaaattgtggttgaagccttagtgaggcgatgtatgtaaaattttacaacttgttttcatgctttttgtattacgatttgcagacatttaaagggatacattttcggactcactcggtaGATGTGCGAGGTCTCGTCTTGAATTAACGACTTTTCTCGATGAAATATCGCTCCtctcaagttacgagagatttaatgaaatgtttaatcgcggaatccttcaaaacagatctagaatctttgatcaaatttgtcaaAAAGCAGGCAATTCGTCTTTAAAAACTTAAGCAACTTGTTGTGTAGATGAAGACTAAATGGCGTTACGCTCAAAATATGTTTTTTGAGTAGTTCTGACCAATGCAATAACAGTAATACCAGAATAATCTCATCAGCGTGCAGAGGACAGTATGACCACTGCGAGGGAGGAAATTGTGGAGATGGACGCTACTTGTTTCTCCTTCGCAGCTTCCTCCTTCGCAGCTCATAGTAGACACAGACcagcctggttcctagtcgtcgatgttgcggaggagacaaacgcgtttttttgttgagaaaaagggttgaattatgaaggagaaggaagagctcaacatttgagacctcttccctggagtccagtccccttagtcgaaagtgacgtcagggaaccagactgGACACAGACATTGACATCTGGAAGGCTAGATGTGTAGATTCTTCAAGTATTCACTGTTTTCCAGTGTTGTTGTTGCTATAGTATTTTTCGTTGTGGAAATTTCGTTGACACAGAATAGATTAAATCTACCAAAAAAAGGAAATTGTCATAATGTCCTTCGCGCACTGATGAGCGACGAAATAGACTTGGAGCAAGTCTATCATAGGACTAGTGTCCTTTTAACTCGTTTCATATAAAAACATTTAGAAACTTTTTTCGTAGAGCTCTTTTCAGGATTATGCCTTACTGTCTTGTATTGTAGACATATTCGATACGCATTCATAAATTCTTCAACGATAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01266 all species →	DAO	FAD dependent oxidoreductase	Domain	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF16901 all species →	DAO_C	C-terminal domain of alpha-glycerophosphate oxidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000447 all species →	Family	FAD-dependent glycerol-3-phosphate dehydrogenase	Interproscan
IPR006076 all species →	Domain	FAD dependent oxidoreductase	Interproscan
IPR038299 all species →	Homologous_superfamily	Alpha-glycerophosphate oxidase, C-terminal domain superfamily	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR031656 all species →	Domain	Alpha-glycerophosphate oxidase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11985 all species →	GLYCEROL-3-PHOSPHATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004368 all species →	Molecular Function	glycerol-3-phosphate dehydrogenase (quinone) activity	Interproscan
GO:0006072 all species →	Biological Process	glycerol-3-phosphate metabolic process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00111	glpA, glpD; glycerol-3-phosphate dehydrogenase	EC:1.1.5.3	Glycerophospholipid metabolism	ko00564	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.