Gene detail

Detailed information of scaffold78.g3.t1 in Morbakka virulenta

Genomic Location: scaffold78:20156...62324
NR annotation: XP_001623019.2, pachytene checkpoint protein 2 homolog isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold78.g3.t1

GATCATTCGAGAAGCTATAAGAGTTATAGCGTCTAGTGCTTGAATAAAGCAATTCGTCAAAATGGAATCTGCTCAAGATTTAACAGATTCGTTACCAACTGTACCAAAGCCAAGGAATCATGTTGAAGTATGTCTTACGCAACACAGTATTGCTAGGGCCAACATTGTGGTTCAACATGTTACACAGTTTCTACTCACATTTGGAGATGTCTACCAAGGTGCTGTATTTCTTGAATTTCCATCCAATGAGTTTTTGAAGGACAATGTTCACAGTGTCACTATTTCCAGTCAAGATATTGACAACAGTGTTCTTTACCAGAAGGTGGACTTTGAAAACGAAAAAGTTGATTACCATGTTTTCCAACTAAATGAGGAAGGCCCTGCTATAGAGGATATGGAAAGCGAAGAAAACATGCCTGCAGCTAATCACTGGATACTTCCTGCAGCTGACTTCCATGGCACCTGGGATAGCCTAATATTCGATTCAAATGTTAAAGAATTGCTTTTGAACTATGCATACACAACATTGTTATTTTCGGATAGAAATATAGACTCAAACATAATCTCTTGGAATCGCGTCATTTTACTTCACGGGCCACCCGGCACTGGGAAGACTTCACTCTGTAAGGCATTAGCACAAAAATTAACGATAAGGTTATCTGAGAGATTTAGATATGGACAATTACTGGAGATTAACAGTCACAGTTTATTTTCAAAATGGTTTTCCGAGAGTGGAAAATTAGTCTTAAAGATGTTTCAGAGAATTCAAGAATTAGTGGATGACAGAGATTCTATTGTTTTTATTCTAATTGATGAGGTCGAAAGTTTGACTGCAGCAAGGGCGTCAGCAATGAAAGGAACGGAACCCTCTGATTCAATACGTGTCGTCAACGCCTTGCTCACACAGATAGATCAAATTAAAAGGAACCCGAATGTTATTATTCTAACGACATCGAATGTCACTGGCGCTATCGACTTAGCCTTTGTTGACAGAGCGGACATCAAACAGTATATTGGGCCGCCATCCGTTAAAGCAATTTATAGAATTTTCCAATCTTGCATTAAGGAATTGATAGAGAAAGGTATCATTACACCACCCGAGACTATTTTGGATTTAAGAAGCCTAGAGGTCATACGCTATCATAAAAATGAGGCAACACGCCTTAGTTTAGAACTTCTCAAGATTTCAAGGAAAGTTCAAGGATGTAGTGGACGAAACTTGCGGAAGCTTCCCTTCTTGGCACACGCTCTTTATCTTCAGACACCAACAGTCACACTCGAACAATTTTTTGATGGACTGACCCTTGCTGCAGAAAAGCATATTGCAGACAACGAAAGGTTGGAGGCCGAACCATCCAATATGAACAATGACGCCAATAAATCTTTGCCTAATGGAGATTATTAATAAAGAAACGAATAAAATTCTTGATTTTCAACGTTTTTTTTATTTGAGCTTGTTTTACCATCATTAAACTATGATGAAAGTGAGTTCATTCTATTCTGTGAAACCTCTGCAGCTAGTGATTGCATCTCAAATTTGGTCATTTTGTGCCTACGTGCGATACTTTTACAATTAAAAGTTATAATCAACTAAAACTTAAGGTGTTTTTTTTCTGGCATTCGTTATATTAGCCAGTATTTCACACATGTACGGTAGCTTTAAGGTAACCACTGAAAGTAGTTGTTTGTTTCAGTAATTAGGCCTCCTAGAGCCAACTAGTTAGTAATTAGACAACCTAAAGGCAATGAGAAGAAGGGTTTATTTTCAAAATATCTTAGAGGTGAAAATAATTTTTGAAATTGCCACGGTAATTAATTGGCTCATATTTTGGCCACTCTAGAAGAAAATCATGTCTCAGTAAATGACCCGGATTTTTTACCCCCATTAGCCTTTTTGCTTCATTTGCAATATTCACCTCTTTTTTTTTGCGAAGTCTATCCACTTATTAAAAAGTAATTGTAAGTGTATTTTATAAGCGTTACGGATATAAGCCATTGACGTACAAATTGACTTACTAAAACTAACCCCAACACTCAGCATATTCTAAGCTTGTACCTAACATCGAAGTTGCAGTACAGAAAGATATTTTTTGTATGGAAAAATGTTTGAACACCAAAAGTGGAAGTATTCGTAAATGTCATGCAAAATGTAAGTCTCTTTTCAGAATATAATTCACAACTACCA

Protein

Uniprot

Uniprot term	Description
E1C6Q1	Pachytene checkpoint protein 2 homolog OS=Gallus gallus OX=9031 GN=TRIP13 PE=3 SV=1
Q6P4W8	Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis OX=8364 GN=trip13 PE=2 SV=1
Q5XHZ9	Pachytene checkpoint protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Trip13 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan
IPR044539	Family	Pachytene checkpoint protein 2-like	Interproscan
IPR003960	Conserved_site	ATPase, AAA-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45991	PACHYTENE CHECKPOINT PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0007131	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0051598	Biological Process	meiotic recombination checkpoint signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22399	TRIP13; pachytene checkpoint protein 2	-	Chromosome and associated proteins	ko03036	deepkoala