Gene detail

Detailed information of scaffold78.g9.t1 in Morbakka virulenta

Genomic Location: scaffold78:276286...278713
NR annotation: KAJ8356655.1, hypothetical protein SKAU_G00194490 [Synaphobranchus kaupii]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold78.g9.t1

atgcgtgcaggaaacgagatggacaggcagcaaggcgagggtttcaagctatactactgtggaaaggagaagggcatgaatggggtgggggtgatattgcggcaggagtttaccagctctgtgctggaagtcaccaggaagtcagacaggctgattgctatgaagattgacctagcaaaggacattgtgaatgtcatcagcgcatacgcaccacaggttgggtgtgagcaagaacagaaggagaatttctggaatgaattggaggatctagtaaatggcctgccaagcaccgaacgtatcatcatcgggggtgacctgaatgggcatgttggtaaaggcaacgatggagatgagcttgtgatgggaaattatggttatggacccaggaatgaggaaggacagagaattgtggattttgccctcagcactggcttgatagtggtcaacacatactttaacaagaaggaaaaccatctggtaacttacgaaagtggtggaaggagaactcagattgactacatcatgtgtagaagaaactcgctcaaggatgtgagagactgcaaggcaatacctggagagtcagtggctaagcaacatcgagtggtgattggggacataaccttgtgtagcaaacaccaccagacagagaagtgtgagcctcagactagatggtggaaattgaaagaaccggagtatagtgccgacttctgcaagatggtgctgacaagaatacctggcaatgctacagaggtttcatgggagacaatgtcgaaagctatgagagaggcagcaagaagtgtgttgggaatgtcatcggggcgtagaaagaaagacttggatagctggtggtggaacgaagacgtgcagagtgccataaccaagaaaaagcatgcactgaacgagtggtataaaaccaaagatgaggaaagcagacagcgatatgacgagagtaagaagttggccaaaaaagcggtggcgaaggcaaaggaggatgtgtatcgggggctctacaaatctctccaggagacgaactcagagaataaagtgtatagactggcaagacagagggataaagccagtaaagatgtgcagcatgtaacgatgataagagatgagaatgacagaatcttgacaagcaagaatgacatcctggcaaggtggaagaattattttgaagacctgatgaatgtgaaaaaccctagggaaagaagagcagatgaacagaccgtcaatggaagtgaggtccaagaaatcagtaaagcggaagtaagtaaattcattaagaagatgaaaaaagggaaggcagttggcccagataacataccggtagaggcatggcttgcgatgggtgagactggattggattttctgacccacctttttaacaagatcctcaggggtgaaccaatgccaaaagagtggagaaaaagtacccttatcccaatctacaaggaaaagggcgatgcacaaagttgtgggaactaccgcgggatcaaactcatgagccacgccatgaagctatgggagagagtgattgaggcaaggctccgtgagattgtcaccatcagcgatgagcaatttggctttatgccaggcaaaagcaccacagatgccatatttgcactcagaattctccttgaaaagtatagagaaggacaacaacagctggtctgtgttttcatagaccttgagaaagcctatgataggatacctagagaggaagtatggtactgcatgcgagctgcaggagtgccagagatctacatcaaagctgtacaggatatgtactccgactgtgagactgaggttagctgccaaatgggaacgacagcagctttcagagtgggagtaggattgcatcagggttctacactcagccccttccttttcgccattatcattgacaacctcacagtggaagtaaggaaagaagcgccttggtcaatgatgtttgccgatgatgtcgtgctatgttgtagtaccaagcaggaagctgaatgtgaactggagaaatggagggacgcgcttgaaaggagaggcttaagagtcagcagagcaaagactgagtttctggtcctgaatgataaggaagtacagactaagatcaccatggatggggaggaagtgaacaaggttgacggattcaagtacctgggctctactttagaaagcaatggagactgcgatcgagaagtgcagaagagggtgtag

Transcript

scaffold78.g9.t1

acagatatgatggtcaggaggaaactggacatcctatgcgtgcaggaaacgagatggacaggcagcaaggcgagggtttcaagctatactactgtggaaaggagaagggcatgaatggggtgggggtgatattgcggcaggagtttaccagctctgtgctggaagtcaccaggaagtcagacaggctgattgctatgaagattgacctagcaaaggacattgtgaatgtcatcagcgcatacgcaccacaggttgggtgtgagcaagaacagaaggagaatttctggaatgaattggaggatctagtaaatggcctgccaagcaccgaacgtatcatcatcgggggtgacctgaatgggcatgttggtaaaggcaacgatggagatgagcttgtgatgggaaattatggttatggacccaggaatgaggaaggacagagaattgtggattttgccctcagcactggcttgatagtggtcaacacatactttaacaagaaggaaaaccatctggtaacttacgaaagtggtggaaggagaactcagattgactacatcatgtgtagaagaaactcgctcaaggatgtgagagactgcaaggcaatacctggagagtcagtggctaagcaacatcgagtggtgattggggacataaccttgtgtagcaaacaccaccagacagagaagtgtgagcctcagactagatggtggaaattgaaagaaccggagtatagtgccgacttctgcaagatggtgctgacaagaatacctggcaatgctacagaggtttcatgggagacaatgtcgaaagctatgagagaggcagcaagaagtgtgttgggaatgtcatcggggcgtagaaagaaagacttggatagctggtggtggaacgaagacgtgcagagtgccataaccaagaaaaagcatgcactgaacgagtggtataaaaccaaagatgaggaaagcagacagcgatatgacgagagtaagaagttggccaaaaaagcggtggcgaaggcaaaggaggatgtgtatcgggggctctacaaatctctccaggagacgaactcagagaataaagtgtatagactggcaagacagagggataaagccagtaaagatgtgcagcatgtaacgatgataagagatgagaatgacagaatcttgacaagcaagaatgacatcctggcaaggtggaagaattattttgaagacctgatgaatgtgaaaaaccctagggaaagaagagcagatgaacagaccgtcaatggaagtgaggtccaagaaatcagtaaagcggaagtaagtaaattcattaagaagatgaaaaaagggaaggcagttggcccagataacataccggtagaggcatggcttgcgatgggtgagactggattggattttctgacccacctttttaacaagatcctcaggggtgaaccaatgccaaaagagtggagaaaaagtacccttatcccaatctacaaggaaaagggcgatgcacaaagttgtgggaactaccgcgggatcaaactcatgagccacgccatgaagctatgggagagagtgattgaggcaaggctccgtgagattgtcaccatcagcgatgagcaatttggctttatgccaggcaaaagcaccacagatgccatatttgcactcagaattctccttgaaaagtatagagaaggacaacaacagctggtctgtgttttcatagaccttgagaaagcctatgataggatacctagagaggaagtatggtactgcatgcgagctgcaggagtgccagagatctacatcaaagctgtacaggatatgtactccgactgtgagactgaggttagctgccaaatgggaacgacagcagctttcagagtgggagtaggattgcatcagggttctacactcagccccttccttttcgccattatcattgacaacctcacagtggaagtaaggaaagaagcgccttggtcaatgatgtttgccgatgatgtcgtgctatgttgtagtaccaagcaggaagctgaatgtgaactggagaaatggagggacgcgcttgaaaggagaggcttaagagtcagcagagcaaagactgagtttctggtcctgaatgataaggaagtacagactaagatcaccatggatggggaggaagtgaacaaggttgacggattcaagtacctgggctctactttagaaagcaatggagactgcgatcgagaagtgcagaagagggtgtagacgaggtggaacagttggcacaaagtaacaggggtgttgtgcgacaagtacatgcctacagaggtcaagggaaaggtacacaggacagtggtacgacctggaatgatgtatggaattgagacattacctttcactaagaagcaggaaaacaaattggaggtgaatgaaatgaaaatgttgag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46238	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan