Gene detail

Detailed information of scaffold783.g2.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold783:8735...24934
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold783.g2.t2

atttttgatattttgaagctgccatcatggtttagactcgtttggaaaatatggcataaacaacaccagcagcaacacgtaaagttataaactttaggctgccaaggaagagaagagaaagtgaagatgtacaagagtattcagataatcataatcctgattcaaggctgccaattcatagtctcgtttctggacatcgaagagctgaaagagctcaagtatggcatcgaaatcacaaagaaacctgtgatattttcacacattccacaagataatatactccacatatcttccaaatatggacaaacatatcaatgtcttatgcctgagaaggatgatgctcaaaagaatgatgatgcaaatgacaatggaaacactgtcactgtaaagtcactgttagactctgctctagatggacaatgtttaatttatacccttggatggtggacatacaaattttgctacatgaaagatataactcaatatcatgaagaaaatggtgttgcacaaggagacattctcagtcttggtcagtttgaatctgaaaaagaatggaatgaaacgaattcacaaggaaagaccaaggcaaatgcacatcattatcaaaaatacacgaatggtagtaattgtgaattgattgggaaacctagacagacaactgtgaagttcgtgtgtaatgacgacatggatactggcatagcttctgttggtgagccagagacttgctcctatgtattgactgtcaacaccaaagctctctgtgcacatccattgttcaaaacacgtggcaaagagaaagcaagagagatcacgtgctcaccagctctaacccaacatcagtatgatcaatatgtccagaaagaggaagaaattttacggaaaaagaaggaggccaaacttcaagctgaagctgaagcagcacaatccagtgacaaaaataaagagcaaaaatcgaaaggcttattgggagtgtttgaaagtgttttgaaaggactgtcttctttgtcagaaaagcaaggaacgaaaccgaagaatgcttttaacatgttcaatctcaaagacagtggaagtgatctgagcaacttttggaaagatattggctttgaagaggaaattttacggaaaaagaaggagtccaaacttcaagctgaagctgaagcagcacaatccagtgacaaaaataaagagcaaaaatcgaaaggcttattgggagtgtttgaaagtgttttgaaaggactgtcttctttgtcagaaaagcaaggaacgaaaccgaagaatgcttttaacatgttcaatctcaaagacagtggaagtgatctgagcaacttttggaaagatattggctttgaagaggctgcaaacagtaaaagtactgataagaaagaggaactgacaaagcaggaactccataaacaggctgcaaacagtaaaagtactggtaaaatagaagaactgacaaaggaggaactccataaacagggtccaggagaagatgcaagcaaagatgaaatcaagaaagatacgatgaaagattacgatcctttcacaggcctagaccaaacagaaactgcagaacttctaggcgacaatggcatgagcaagggagacaatatgatgtcatcggaaggaaaatttctggaaagagattcagcagaatcgaaatctgttgctgctgatgttaacaagaatgtcaagcgtttaacgtcattgcaagagacaattaatgaaatcgacaagcaagccgctgaactgataaagaaagatcaagagaaacgaaaaatattcgtgcaacatttcaaaaagtcaaaacagaaagcagaaaaacaactacaagactttgtttcgatgctgcaaagattgcgtgttaaaaaaggcgaacaaagttcgacagtgatttcgaagcgtttacagaagttgattgacagagttgatggaaatgttcaagcatacagatccaaactagaggacctagacgataagatgaagaaaaccttgcagaaaagcaaaaatttcgagaagaaatataaagaaataatgaataaatatggaagtgaaaaattgaaaagaaggntgcagaactctgcagaacgtttctattcacgggcatctaatttgagacgagcagtcacgaagataacatctgtgcagaatcatatgcatgaagatgttttggttcagtgtgatcacatgccttcccccagtcaatggcgccattgtttgctggggttctgcacctttcctctcaacttcacctacgacgtttgcatctttgcatctgtagctgtgtaggagggggtccttctaccttcggtgatgctgcgaatgctagcctctgtgcaggccgccggttacatcatcctctaaagttgacttatttgcataatgagtactattaacaagtggctaatgatgcgttcgttctagaaaacgattgttttaacataattaagctgctaatgaagtcaagaacgtgccaattctggttaaatttgttgctgtgccagggtaaacatcatggtaatttatccatcttacggtgacaaatttgtctaacatgaaatatgccgacgtcaaatttttctatcggatcgcgggaaacttctgtcttgtgtgcgctttatgtgcgctttctttatttcagtgccaattaacagaggtaaaacgttaattaattgctttaacgagcgtgacggactttctttctttctttctttctttctgactttctgactgacccggagccccctcttagattacaaagttggactttgtaatcaaaaaggcactcttaa

Transcript

scaffold783.g2.t2

ATTTTTGATATTTTGAAGCTGCCATCATGGTTTAGACTCGTTTGGAAAATATGGCATAAACAACACCAGCAGCAACACGTAAAGTTATAAACTTTAGGCTGCCAAGGAAGAGAAGAGAAAGTGAAGATGTACAAGAGTATTCAGATAATCATAATCCTGATTCAAGGCTGCCAATTCATAGTCTCGTTTCTGGACATCGAAGAGCTGAAAGAGCTCAAGTATGGCATCGAAATCACAAAGAAACCTGTGATATTTTCACACATTCCACAAGATAATATACTCCACATATCTTCCAAATATGGACAAACATATCAATGTCTTATGCCTGAGAAGGATGATGCTCAAAAGAATGATGATGCAAATGACAATGGAAACACTGTCACTGTAAAGTCACTGTTAGACTCTGCTCTAGATGGACAATGTTTAATTTATACCCTTGGATGGTGGACATACAAATTTTGCTACATGAAAGATATAACTCAATATCATGAAGAAAATGGTGTTGCACAAGGAGACATTCTCAGTCTTGGTCAGTTTGAATCTGAAAAAGAATGGAATGAAACGAATTCACAAGGAAAGACCAAGGCAAATGCACATCATTATCAAAAATACACGAATGGTAGTAATTGTGAATTGATTGGGAAACCTAGACAGACAACTGTGAAGTTCGTGTGTAATGACGACATGGATACTGGCATAGCTTCTGTTGGTGAGCCAGAGACTTGCTCCTATGTATTGACTGTCAACACCAAAGCTCTCTGTGCACATCCATTGTTCAAAACACGTGGCAAAGAGAAAGCAAGAGAGATCACGTGCTCACCAGCTCTAACCCAACATCAGTATGATCAATATGTCCAGAAAGAGGAAGAAATTTTACGGAAAAAGAAGGAGGCCAAACTTCAAGCTGAAGCTGAAGCAGCACAATCCAGTGACAAAAATAAAGAGCAAAAATCGAAAGGCTTATTGGGAGTGTTTGAAAGTGTTTTGAAAGGACTGTCTTCTTTGTCAGAAAAGCAAGGAACGAAACCGAAGAATGCTTTTAACATGTTCAATCTCAAAGACAGTGGAAGTGATCTGAGCAACTTTTGGAAAGATATTGGCTTTGAAGAGGAAATTTTACGGAAAAAGAAGGAGTCCAAACTTCAAGCTGAAGCTGAAGCAGCACAATCCAGTGACAAAAATAAAGAGCAAAAATCGAAAGGCTTATTGGGAGTGTTTGAAAGTGTTTTGAAAGGACTGTCTTCTTTGTCAGAAAAGCAAGGAACGAAACCGAAGAATGCTTTTAACATGTTCAATCTCAAAGACAGTGGAAGTGATCTGAGCAACTTTTGGAAAGATATTGGCTTTGAAGAGGCTGCAAACAGTAAAAGTACTGATAAGAAAGAGGAACTGACAAAGCAGGAACTCCATAAACAGGCTGCAAACAGTAAAAGTACTGGTAAAATAGAAGAACTGACAAAGGAGGAACTCCATAAACAGGGTCCAGGAGAAGATGCAAGCAAAGATGAAATCAAGAAAGATACGATGAAAGATTACGATCCTTTCACAGGCCTAGACCAAACAGAAACTGCAGAACTTCTAGGCGACAATGGCATGAGCAAGGGAGACAATATGATGTCATCGGAAGGAAAATTTCTGGAAAGAGATTCAGCAGAATCGAAATCTGTTGCTGCTGATGTTAACAAGAATGTCAAGCGTTTAACGTCATTGCAAGAGACAATTAATGAAATCGACAAGCAAGCCGCTGAACTGATAAAGAAAGATCAAGAGAAACGAAAAATATTCGTGCAACATTTCAAAAAGTCAAAACAGAAAGCAGAAAAACAACTACAAGACTTTGTTTCGATGCTGCAAAGATTGCGTGTTAAAAAAGGCGAACAAAGTTCGACAGTGATTTCGAAGCGTTTACAGAAGTTGATTGACAGAGTTGATGGAAATGTTCAAGCATACAGATCCAAACTAGAGGACCTAGACGATAAGATGAAGAAAACCTTGCAGAAAAGCAAAAATTTCGAGAAGAAATATAAAGAAATAATGAATAAATATGGAAGTGAAAAATTGAAAAGAAGGNtgcagaactctgcagaacgtttctattcacgggcatctaatttgagacgagcagtcacgaagataacatctgtgcagaatcatatgcatgaagatgttttggttcagtgtgatcacatgccttcccccagtcaatggcgccattgtttgctggggttctgcacctttcctctcaacttcacctacgacgtttgcatctttgcatctgtagctgtgtaggagggggtccttctaccttcggtgatgctgcgaatgctagcctctgtgcaggccgccggttacatcatcctctaaagttgacttatttgcataatgagtactattaacaagtggctaatgatgcgttcgttctagaaaacgattgttttaacataattaagctgctaatgaagtcaagaacgtgccaattctggttaaatttgttgctgtgccagggtaaacatcatggtaatttatccatcttacggtgacaaatttgtctaacatgaaatatgccgacgtcaaatttttctatcggatcgcgggaaacttctgtcttgtgtgcgctttatgtgcgctttctttatttcagtgccaattaacagaggtaaaacgttaattaattgctttaacgagcgtgacggactttctttctttctttctttctttctgactttctgactgacccggagccccctcttagattacaaagttggactttgtaatcaaaaaggCACTCTTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07915 all species →	PRKCSH	Glucosidase II beta subunit-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045149 all species →	Family	Protein OS-9-like	Interproscan
IPR009011 all species →	Homologous_superfamily	Mannose-6-phosphate receptor binding domain superfamily	Interproscan
IPR044865 all species →	Domain	MRH domain	Interproscan
IPR012913 all species →	Domain	Protein OS9-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15414 all species →	OS-9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005788 all species →	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0030968 all species →	Biological Process	endoplasmic reticulum unfolded protein response	Interproscan
GO:0030970 all species →	Biological Process	retrograde protein transport, ER to cytosol	Interproscan
GO:0036503 all species →	Biological Process	ERAD pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold783.g2.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.