Gene detail

Detailed information of scaffold792.g7.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold792:109126...142207
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold792.g7.t1

gcgacctcgaaggtatcaagtgtttgacgaaacttcgtgtggagtttagctctctcaatgcacacagattccgtcataactttgactgcgtcagcccactgtgcttgtgtggtatgggcaacgaagataacgcatatttcctcctgcactctcatcggttttgtgtattgcgtcgtgatctccttggtcagctttctgaagtccccggtcttgatcttacaaatatggactcaaaagcattgtgtcaagcactggaaattatcatgaaagattcgacgatacgaaatgacgatgaaataatgaatgcatatagaacgtcagctgatatctgtttgtggatatttacagaagagttgaggtcaatgagctttagaaaaacgactgaaattattccagacagattcttaccaaagtcattatccaaagcattcataaggccagctgaatttgaacttcgaaatgggaatgtgcatgaagcagttgaccattatccatcaatactacatgtggttgaatctaaaggcaccgctgccctcagaaaagtattggctttgcagttggctgaaattttactatttggagtatgtgaatcaaattacaacagtcctccactaatggcatggcaaaatgaaagccgtaagcagacagagccattgtccgtcaacacgtaccagcaaagggcgtcctcagtgtcatctgccagtggcaggtcaactccgaagccttctcataaagattatggacgttcgaggtcctctagcaaggaaagcaattctttctgcccaaaagatgaatttgaagaatcgcttctccttttgctgatcagcgagtcattgctccttcgagatggctgtgtaagcttgtttgaggaagataagcaaaggcgaaaggacaccattgatgaaacgggcacaatttacgatctactttgcatcgcattgacaagaaggcaacagcacggattctttcttgagtgtatagagagaggcataaaacttgcttactatcagtttgacatctggttccagtatggcttagctttgttgtgtgacagaaagtacaagaaggcgttgattgtgttgaagaaatgtcatggactgcagccggataacgttcaagttcttctgtattgcatgaagatttgtatcaaccatcttcgacagtatgaagaagctgttatgtatgctgaaaaggctcttgaagaaacgactgacattctggcaaaggcaaattgtctgtttgctttaggaattagttacagtttaatggcaagtaaagcaccaaatcatcatgaaggaacattgctacgaaagagatcaattcaggccctagaaaaggcccatgatttggatccagatgacgctgatattttgtgtcagctttctttgaatcatgccctaagcagagagctcacaactgctgcatcgctggtgaatcaagccctgcaacttgatccatgccacagagactctttgcttctcttggcacttattttatctgcacaaagcaggcaccaagacgctttagagatactcgaagttgctttgagagaattcccagaagatttcaacttgctacaagcaaaagtatcacttacagtagaatgttacagtggagagcaggcattgactgtttgccaagaaatgctgagactgtggaatgacatttatggagaagagatctgggaggcaaatgtttcacaacaagaaggtgatgggaaatcaggaaaaagttcgatattaaagaaatcagcattggatgttcgatccactgatggtggtgcttccaaaagtgctaaaagtttgtcatttttcgaaggagtaaaaccgccccaagatgacgatgaagtgagtagtatcgcggcatctgttacactagaaagaagtctatcggaggttgcgtcattttccgtatcaggagcaaagttaaaggcacctgctgctattgctttactcgctaaattgtggctgataacaggtgaggaaaattcgtttctattacgtcacattgccttataaacggagtacgcccaaaatgctgctctaccactggttgtaggatagatttagcctctatgaatgaactaaattggtgtga

Transcript

scaffold792.g7.t1

gcgacctcgaaggtatcaagtgtttgacgaaacttcgtgtggagtttagctctctcaatgcacacagattccgtcataactttgactgcgtcagcccactgtgcttgtgtggtatgggcaacgaagataacgcatatttcctcctgcactctcatcggttttgtgtattgcgtcgtgatctccttggtcagctttctgaagtccccggtcttgatcttacaaatatggactcaaaagcattgtGTCAAGCACTGGAAATTATCATGAAAGATTCGACGATACGAAATGACGATGAAATAATGAATGCATATAGAACGTCAGCTGATATCTGTTTGTGGATATTTACAGAAGAGTTGAGGTCAATGAGCTTTAGAAAAACGACTGAAATTATTCCAGACAGATTCTTACCAAAGTCATTATCCAAAGCATTCATAAGGCCAGCTGAATTTGAACTTCGAAATGGGAATGTGCATGAAGCAGTTGACCATTATCCATCAATACTACATGTGGTTGAATCTAAAGGCACCGCTGCCCTCAGAAAAGTATTGGCTTTGCAGTTGGCTGAAATTTTACTATTTGGAGTATGTGAATCAAATTACAACAGTCCTCCACTAATGGCATGGCAAAATGAAAGCCGTAAGCAGACAGAGCCATTGTCCGTCAACACGTACCAGCAAAGGGCGTCCTCAGTGTCATCTGCCAGTGGCAGGTCAACTCCGAAGCCTTCTCATAAAGATTATGGACGTTCGAGGTCCTCTAGCAAGGAAAGCAATTCTTTCTGCCCAAAAGATGAATTTGAAGAATCGCTTCTCCTTTTGCTGATCAGCGAGTCATTGCTCCTTCGAGATGGCTGTGTAAGCTTGTTTGAGGAAGATAAGCAAAGGCGAAAGGACACCATTGATGAAACGGGCACAATTTACGATCTACTTTGCATCGCATTGACAAGAAGGCAACAGCACGGATTCTTTCTTGAGTGTATAGAGAGAGGCATAAAACTTGCTTACTATCAGTTTGACATCTGGTTCCAGTATGGCTTAGCTTTGTTGTGTGACAGAAAGTACAAGAAGGCGTTGATTGTGTTGAAGAAATGTCATGGACTGCAGCCGGATAACGTTCAAGTTCTTCTGTATTGCATGAAGATTTGTATCAACCATCTTCGACAGTATGAAGAAGCTGTTATGTATGCTGAAAAGGCTCTTGAAGAAACGACTGACATTCTGGCAAAGGCAAATTGTCTGTTTGCTTTAGGAATTAGTTACAGTTTAATGGCAAGTAAAGCACCAAATCATCATGAAGGAACATTGCTACGAAAGAGATCAATTCAGGCCCTAGAAAAGGCCCATGATTTGGATCCAGATGACGCTGATATTTTGTGTCAGCTTTCTTTGAATCATGCCCTAAGCAGAGAGCTCACAACTGCTGCATCGCTGGTGAATCAAGCCCTGCAACTTGATCCATGCCACAGAGACTCTTTGCTTCTCTTGGCACTTATTTTATCTGCACAAAGCAGGCACCAAGACGCTTTAGAGATACTCGAAGTTGCTTTGAGAGAATTCCCAGAAGATTTCAACTTGCTACAAGCAAAAGTATCACTTACAGTAGAATGTTACAGTGGAGAGCAGGCATTGACTGTTTGCCAAGAAATGCTGAGACTGTGGAATGACATTTATGGAGAAGAGATCTGGGAGGCAAATGTTTCACAACAAGAAGGTGATGGGAAATCAGGAAAAAGTTCGATATTAAAGAAATCAGCATTGGATGTTCGATCCACTGATGGTGGTGCTTCCAAAAGTGCTAAAAGTTTGTCATTTTTCGAAGGAGTAAAACCGCCCCAAGATGACGATGAAGTGAGTAGTATCGCGGCATCTGTTACACTAGAAAGAAGTCTATCGGAGGTTGCGTCATTTTCCGTATCAGGAGCAAAGTTAAAGGCACCTGCTGCTATTGCTTTACTCGCTAAATTGTGGCTGATAACAGGTGAGGAAAATTCGTTTCTATTACGTCACATTGCCTTATAAACGGAGTACGCCCAAAATGCTGCTCTACCACTggttgtaggatagatttagcctctatgaatgaactaaattggtgtga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19440 all species →	TTC7_N	Tetratricopeptide repeat protein 7 N-terminal	Repeat	Interproscan
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR045819 all species →	Domain	Tetratricopeptide repeat protein 7, N-terminal	Interproscan
IPR051722 all species →	Family	Endocytosis and PI4K-regulating protein	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23083 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN, TPR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0046854 all species →	Biological Process	phosphatidylinositol phosphate biosynthetic process	Interproscan
GO:0072659 all species →	Biological Process	protein localization to plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold792.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.