Gene detail

Detailed information of scaffold8.g4.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold8:41257...53374
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold8.g4.t2

tctaggcctaaattgttttgacaaaatcgataaattcatcttatgtgattgactttgccctttcctatcttagggcaggaaagtgcttctaggcctaaacaccttgcacactcacgttcttctgggcctaaattgttttgacaaaatcgataaattcatcttatgtgattgactttgccctttcctatcttagggcaggaaagtgcttctaggcctaaacgccttgcacactcacgttcttctaggcctaaattgttttgacaaaatctatttcgtaatgttcactataaaaaggatgctgattttactcttgcatcatgcttgcatttaaaattggccatatgcatttaaatatcaattaagtgataaataattctattaatgtatccaaactgcttatcataagaaagaagaaagactacactttcagatggtatgaatttcatctattaaaatcatatcaacttttaaagattttcaattacagttgcgttacgttttttttctgaaaatcactgtataaccgagcagtatgatgagatggtcttaaagaaggagggaatcctctatcccagtttcccagtcatagtttgtgatgattcccacttcccagccacttgtttcggaaatttatcgggtgaagcagaaaactgtatgcactgtttgaagtgttctacaggaaaagctatttggccaatctgtattattttactttcatcgtcttcctgaggctttgacttgatttttgagactattctcataattctatgtgcattgtttccttctaaaatcaggatgtagcccaaaattctcggttttacaaaaagcagccaaaaatgggctgttcattgtcggataaattttgaatttttgatgctcagcattgatgagagagcaagattacaattcagcactttccatatcattaaaagcaattattgagcttagaaaactttattttgccactttctttatcaagctttactcgcaatcccgtggaagagaaacaacacagtcagtaaaaatataatttcgatcatacagtaaaaacccgcacataagaacctaagattttgaaatcagcctgtttaggttcttatgcaatgagggacatccagtaatcagggtgtaggttcttagcaaagggaaatatgcgaatctaaatcttagccaaacttatttacactattggctctatctatttcaacccaagcttacccagtttacccctgcaggccctgcctaccacagttttgtaagtaatttcttagagttcacgaaagaggttgattggcaaacagattgcattttatttcccaataatgaatgaaggaaaccctttattataaacctagttatgatatcaggctgaaagggttcttatccattgggtacaaaatatatgatttcaggctgtaggttcttaataaataaaggttcttatgtgcgggtttttactgtaatataggccacatcaacggtgtattattgcccatggttacacagcatgtttattttttttcatcaatccttcatatcattgatccttcttagagttgaagccacggcatctggccgtttttagcaattttgataacaaaggatatgtagtatatacgttgaaatcgctgaaaatttacaaaataatgttactgctttaagaagtaacagaaagacattgagaaagtgttatatgtatggatttaagcggtttatcgtattttaaaactaggcatttaatatattcattatactattagtgtaaatatcatatgatattgtcgtattctggcacaatgccgccatattggagttcgaagctgtggtgctgttgcaacattataaagcccgtttcttttcctctgaaagagcatatgcatccagttacttgataaacgtatgccttgacgtcaagagcttttattggagtaaagactggggataatctgttgctgtttctaaaaaggacggacgttaaatcctgaagttggttgtttaggcccatcaaaacatctgcaaggcaagacaacaagtgtttgaagtcagagcaggggaaagcagagattcaagcatgtcagcgatagaagaagaagttctcgggatcggcaagaacttggagaaacttgtagagcaagggcaggctgacaacagtctagcaatggacaatctaaagaaattgaaagagataccagttacccttgatattttacagaaaacaagaataggaatgtcagtcaacgttttgaggaaagcaagtagcaaagatgatttgcaaggtctagcaaaggcattgatcaaaaattggaagaaattattagacaaccaagacaaggcaaaagctcaaaaggacagcaatttacaaagaacttcatcagatagtaatatgtcttcttcgtcacaatcaaatatcacgcaagcggcagctgcaataagtcagaacaacggcaatggcagcaagagtggtgggaataaaaattcaacaacaagaccaatgacattcccacctataaaaggagacgtagctgttcgacaaagatgcagagaaatgttggaaaattcactgaaaacagatggtgacccagttacaaacattaccgatttagcagcacatatcgaagaagcaatttttatggaattcaaagacagcggcagcaaatacaaaaacagggtcaaaagtagagtgatgaaccttcgagataaaaataacccaaacttgaagttgaaagttcttcatggtgatctcgcagcggaacgattcgctgaaatggcaagtgaagagatgaaaaaagcaagaagtgaaatgacacaacaagccataaaagatcatcaactagcaaccacagggggaacgggtacagatcaattcaaatgtagcagatgcggaaaaagaaattgtacatataaccaggtccaaacgagaagtgctgatgaaccgatgacaacttttgtcctatgtaatgaatgtggcaagaggtggaagttctgctgagaagtcaaacgaattcaatacactggatgctattatcttgacctggaagagactggaagagactggaagagactagaagagactatatggacgattaggcatgatacttttgtcatttttatgcatcataaatctacaaagctataactgacgcattgtatgcctttcagtcagcatagcttccaaatatttaactcggcgtaaaaaggtgggtgtaaaattctgtgatctatttcttctcactgagtggcttgaaacaaactttagtcacgtatctttaattctaccgttggacttttcagaagttttgaatatttttcgaaattacagcttatgttatgtttcaactcatttaaggatgtgacgtcatcaaatctctaagtcattaaccagaagagtgacagacttttgcttgataccatatcgtagacatccataaactatggttttcttcgaaattatttcatgttgcttcaaacagtttagatattacgatggttttaagttttttgaaaattttttcttgagttcttgaaaaagtagaaaaacactctaattctgaaaatattgtacatttcagaagagtccaacggtagaattatagaaaaatagctaaattttctttcaaatcattcagttcaaagaaagaaatagctgaattttacaccagcctttttaaagatttggaacaatgcctttcagtcaaccaaaaagctcatgtttcggtgtctcaaaattgcagcagttttcaagaatgtgccngttgcttcaaacagtttagatattacgatggttttaagttttttgaaaattttttcttgagttcttgaaaaagtagaaaaacactctaattctgaaaatattgtacatttcagaagagtccaacggtagaattatagaaaaatagctaaattttctttcaaatcattcagttcaaagaaagaaatagctgaattttacaccagcctttttaaagatttggaacaatgcctttcagtcaaccaaaaagctcatgtttcggtgtctcaaaattgcagcagttttcatgaatgtgccaagacatctcgttctggatagaaaatttcaaacctcttcttgctaaagttttgtcttgtgccatggtagaaaaacgtctggatgcttttgcaagcgtttgaagttttactaatatagaattatcaacccaatttctcgatatcaaagttaagtgtagcttcagtttgaaaataaaaaaatcactcgttctgtcctattttattatttcttgcttgttcagtcgacatcaggaatcctttgggacatctggtatttagtcgtgcaaacaatcttcgaagccagatttagatttgaagctttgactctcgacttgttgcaaactcatgacacaggatgttgtaaattttaacaagtgttagctgaaacttgcgaaaacagggaaaacttgccaattttgaattctctttttaaatatatcatgacaaacagg

Transcript

scaffold8.g4.t2

tctaggcctaaattgttttgacaaaatcGataaattcatcttatgtgattgactttgccctttcctatcttagggcaggaaagtgcttctaggcctaaaCACCTTGCACActcacgttcttctgggcctaaattgttttgacaaaatcGATAAATTCATCTTATGTGATTGACTTTGCCCTTTCCTATCTTAGGGCAGGAAAGTGCTTCTAGGCCTAAACGCCTTGCACActcacgttcttctaggcctaaattgttttgacaaaatctatttcgtaatgttcactataaaaaggatgctgattttactcttgcatcatgcttgcatttaaaattggccatatgcatttaaatatcaattaagtgataaataattctattaatgtatccaaactgcttatcataagaaagaagaaagactacactttcagatggtatgaatttcatctattaaaatcatatcaacttttaaagattttcaattacagttgcgttacgttttttttctgaaaatcactgtataACCGAGCAGTATGATGAGATGGTCTTAAAGAAGGAGGGAATCCTCTATCCCAGTTTCCCAGTCATAGTTTGTGATGATTCCCACTTCCCAGCCACTTGTTTCGGAAATTTATCGGGTGAAGCAGAaaactgtatgcactgtttgaagtgttctacaggaaaagctatttggccaatctgtattattttactttcatcgtcttcctgaggctttgacttgatttttgagactattctcataattctatgtgcattgtttccttctaaaatcaggatgtagcccaaaattctcggttttacaaaaagcagccaaaaatgggctgttcattgtcggataaattttgaatttttgatgctcagcattgatgagagagcaagattacaattcagcactttccatatcattaaaagcaattattgagcttagaaaactttattttgccactttCTTTATCAAGCTTTACTCGCAATCCCGTGGAAGAGAAACAACACAGTCAGTAAAAATATAATTTCGATCAtacagtaaaaacccgcacataagaacctaagattttgaaatcagcctgtttaggttcttatgcaatgagggacatccagtaatcagggtgtaggttcttagcaaagggaaatatgcgaatctaaatcttagccaaacttatttacactattggctctatctatttcaacccaagcttacccagtttacccctgcaggccctgcctaccacagttttgtaagtaatttcttagagttcacgaaagaggttgattggcaaacagattgcattttatttcccaataatgaatgaaggaaaccctttattataaacctagttatgatatcaggctgaaagggttcttatccattgggtacaaaatatatgatttcaggctgtaggttcttaataaataaaggttcttatgtgcgggtttttactgtaATATAGGCCACATCAACGGTGTATTATTGCCCATGGTTACACAGCATGTTTATTTTTTTTCATCAATCCTTCATATCATTGATCCTTCTTAGAGTTGAAGCCACGGCATCTGGCCGTTTTTAGCAATTTTGATAACAAAGGATATGTAGTATATACGTTGAAATCGCTGAAAATTTACAAAATAATGTTACTGCTTTAAGAAGTAACAGAAAGACATTGAGAAAGTGTTATATGTATGGATTTAAGCGGTTTATCGTATTTTAAAACTAGGCATTTAATATATTCATTATACTATTAGTGTAAATATCATATGATATTGTCGTATTCTGGCACAATGCCGCCATATTGGAGTTCGAAGCTGTGGTGCTGTTGCAACATTATAAAGCCCGTTTCTTTTCCTCTGAAAGAGCATATGCATCCAGTTACTTGATAAACGTATGCCTTGACGTCAAGAGCTTTTATTGGAGTAAAGACTGGGGATAATCTGTTGCTGTTTCTAAAAAGGACGGACGTTAAATCCTGAAGTTGGTTGTTTAGGCCCATCAAAACATCTGCAAGGCAAGACAACAAGTGTTTGAAGTCAGAGCAGGGGAAAGCAGAGATTCAAGCATGTCAGCGATAGAAGAAGAAGTTCTCGGGATCGGCAAGAACTTGGAGAAACTTGTAGAGCAAGGGCAGGCTGACAACAGTCTAGCAATGGACAATCTAAAGAAATTGAAAGAGATACCAGTTACCCTTGATATTTTACAGAAAACAAGAATAGGAATGTCAGTCAACGTTTTGAGGAAAGCAAGTAGCAAAGATGATTTGCAAGGTCTAGCAAAGGCATTGATCAAAAATTGGAAGAAATTATTAGACAACCAAGACAAGGCAAAAGCTCAAAAGGACAGCAATTTACAAAGAACTTCATCAGATAGTAATATGTCTTCTTCGTCACAATCAAATATCACGCAAGCGGCAGCTGCAATAAGTCAGAACAACGGCAATGGCAGCAAGAGTGGTGGGAATAAAAATTCAACAACAAGACCAATGACATTCCCACCTATAAAAGGAGACGTAGCTGTTCGACAAAGATGCAGAGAAATGTTGGAAAATTCACTGAAAACAGATGGTGACCCAGTTACAAACATTACCGATTTAGCAGCACATATCGAAGAAGCAATTTTTATGGAATTCAAAGACAGCGGCAGCAAATACAAAAACAGGGTCAAAAGTAGAGTGATGAACCTTCGAGATAAAAATAACCCAAACTTGAAGTTGAAAGTTCTTCATGGTGATCTCGCAGCGGAACGATTCGCTGAAATGGCAAGTGAAGAGATGAAAAAAGCAAGAAGTGAAATGACACAACAAGCCATAAAAGATCATCAACTAGCAACCACAGGGGGAACGGGTACAGATCAATTCAAATGTAGCAGATGCGGAAAAAGAAATTGTACATATAACCAGGTCCAAACGAGAAGTGCTGATGAACCGATGACAACTTTTGTCCTATGTAATGAATGTGGCAAGAGGTGGAAGTTCTGCTGAGAAGTCAAACGAATTCAATACACTGGATGCTATTATCTTGACctggaagagactggaagagactggaagagactagaagagactATATGGACGATTAGGCATGATACTTTTGTCATTTTTATGCATCATAAATCTACAAAGCTATAACTGACGCATTGTATGCCTTTCAGTCagcatagcttccaaatatttaactcggcgtaaaaaggtgggtgtaaaattctgtgatctatttcttctcactgagtggcttgaaacaaactttagtcacgtatctttaattctaccgttggacttttcagaagttttgaatatttttcgaaattacagcttatgttatgtttcaactcatttaaggatgtgacgtcatcaaatctctaagtcattaaccagaagagtgacagacttttgcttgataccatatcgtagacatccataaactatggttttcttcgaaattatttcatgttgcttcaaacagtttagatattacgatggttttaagttttttgaaaattttttcttgagttcttgaaaaagtagaaaaacactctaattctgaaaatattgtacatttcagaagagtccaacggtagaattatagaaaaatagctaaattttctttcaaatcattcagttcaaagaaagaaatagctgaattttacaccagcctttttaaagatttggaacAATGCCTTTCAGTCAACCAAAAAGCTCATGTTTCGGTGTCTCAAAATTGCAGCAGTTTTCAAGAATGTGCCNgttgcttcaaacagtttagatattacgatggttttaagttttttgaaaattttttcttgagttcttgaaaaagtagaaaaacactctaattctgaaaatattgtacatttcagaagagtccaacggtagaattatagaaaaatagctaaattttctttcaaatcattcagttcaaagaaagaaatagctgaattttacaccagcctttttaaagatttggaacaatgcctttcaGTCAACCAAAAAGCTCATGTTTCGGTGTCTCAAAATTGCAGCAGTTTTCATGAATGTGCCAAGACATCTCGTTCTGGATAGAAAATTTCAAACCTCTTCTTGCTAAAGTTTTGTCTTGTGCCATGGTAGAAAAACGTCTGGATGCTTTTGCAAGCGTTTGAAGTTTTACTAATATAGAATTATCAACCCAATTTCTCGATATCAAAGTTAAGTGTAGCTTCAGTTTGAAAATAAAAAAATCACTCGTTCTGTCCTATTTTATTATTTCTTGCTTGTTCAGTCGACATCAGGAATCCTTTGGGACATCTGGTATTTAGTCGTGCAAACAATCTTCGAAGCCAGATTTAGATTTGAAGCTTTGACTCTCGACTTGTTGCAAACTCATGACACAGGATGTTGTAAATTTTAACAAGTGTTAGCTGAAACTTGCGAAAACAGGGAAAACTTGCCAATTTTGAATTCTCTTTTTAAATATATCATGACAAACAGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08711 all species →	Med26	TFIIS helical bundle-like domain	Domain	Interproscan
PF01096 all species →	TFIIS_C	Transcription factor S-II (TFIIS)	Domain	Interproscan
PF07500 all species →	TFIIS_M	Transcription factor S-II (TFIIS), central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035100 all species →	Family	Transcription elongation factor, IIS-type	Interproscan
IPR001222 all species →	Domain	Zinc finger, TFIIS-type	Interproscan
IPR017923 all species →	Domain	Transcription factor IIS, N-terminal	Interproscan
IPR036575 all species →	Homologous_superfamily	Transcription elongation factor S-II, central domain superfamily	Interproscan
IPR035441 all species →	Homologous_superfamily	TFIIS/LEDGF domain superfamily	Interproscan
IPR003618 all species →	Domain	Transcription elongation factor S-II, central domain	Interproscan
IPR006289 all species →	Family	Transcription elongation factor, TFIIS	Interproscan
IPR003617 all species →	Domain	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11477 all species →	TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006368 all species →	Biological Process	transcription elongation by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03145	TFIIS; transcription elongation factor S-II	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.