Gene detail

Detailed information of scaffold8.g47.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold8:654717...674082
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold8.g47.t1

ttccactggcttgcggctatttacaatttcgaacactaaacgaaagtgaggcttggccaaagtgggcttggtatgtatagtaagaccttgtacttagccaagcctcacttccctttagttttcgagctttcaaatggccgccagtccaatgcaagccaacggtcgagtttcaacttggaaaaacgaaggattatgtggtttgaaaagcaaatccaatggaataataaaaaaagtaagaaagacgaatgatcattctggtatctggcagtgttttttgttttacacttaaagaacgtcggtcaaccagcatcctttgcagtcgcgctttgctgagcactgctatgtacgatgtcatatgaaaatggctaacgcagccgaaaggcaaagtgcgacgcgcgcagaggatgctggttgaccggcgttctttaactcttcttacggcccttggtcccaccaacaaaaataattttacaggtagtatttaattatgggattatttatagctgtaaatagaataggtcttactagaaacaaattatttaccccgattccattacatttaggccaaataaatttattaattctaccctttcaaaaggcaaggcaggctgagtccccctggtaccgctcgaagtactcgtggataatttcaatgctggtcgcaattttttcaaatttgtaatctaacaactataggaaagaaattgccgttataattttgcttttacataaatatctgttatctcgatgttctcaaatatttttctgctagttggaacgtttccattttgagaagttgttgatttatatatctttcgattttatattaaatctgttgtaatgactgatatgtgttctacgtttcaacatatggatgttaaaaatagattcatcttcattatgaaaacaccaaaacttattggtaaccaatccacctatgattttatggaccaatgtttatcaaacacctacgaaaataaagacaaggcaaaagaccttacctaaattttttatcagccatttgataaccatttacgttccgttcataactatgtataacgttgttgattattgttctgactgattatcattcgcttacctactgtatataatatcgtatgagctaatttgttagttattgttttgctaatgcatttattgttcttgttgttgttgttttaattcattcaatagctgttaaaaaaagaagaaatgtttccggaaatttggggttcgtctcccaatgttgggagcaaatgacgtagctaacagataactagtgcccagtctcgaaatacctctgcgatgagacagagcgaagtgaagggtgaggttttcatggaagagtgtctatcatcgtagctgcagtgaaaccaaatggcaaagaaagcatatgatcacttgtttaaattgctccttattggtgacagtggagtaggcaaaacatgcttacttttcaggttttctgatgatgccttcaacaccacctttatctccactataggaattgatttcaagatcaaaacggttgaagttatgggaaagaaagtgaaactgcaaatatgggatacagcgggacaggaacgattccacacgatcacaacttcatactacagaggtgccatgggtattatgttggtttatgaaatcacagatgaaaagagttttgagaacattgcaaaatggctgagaaatattgatgagcatgctagtgaaggtgttgacagaatgattcttggtaataaatgtgatatggaaaacaagagaatggtagcaaagaaaaggggtgaaacacttccaatggtatttgaccatgaaatgccacaagtgatgaagtcaatttcatccataacccctggatacaacccgaagtttgcttggattgtggtcaagaagaggatcaatgccaaatttttcttggaggcaggcaacagactttcaaaccctccaccaggaacagtcattgacaaatctgtaaccaaaccggaatggtatgatttcttcttggtgtcacagtcggttcgtcaaggaacggtcagtccaacacattacaacatcatcactgatacttctgggctgaagccagatcacattcaaaggctgacgtacaagcttactcacttgtactacaactggcagggaaccatccgcgtaccagcaccctgtcaatatgcccacaagctagcattccttgtcgggcagtcaatacataccgagcccgacattgggctggcagatcgcctttactatctgtaaagatacacaagaaggactgaaagtcgttgtttcaacgctgttttgaagaagtgaaaggcatgtgtcaagccaaaacattgttttgttcagaattttgaaaagtggataagatttatacgctggagtacttattaatgggcccttacttccggtattgtatattttgaatgtttgaggaccaatcggtgttcaaaatgggagtttgattttgagaaacagtgtgacaacgatgttacatcctctaagacgggctcgggagtgatccattcgagtggtggacccttactcctaaaggattggcgagattgacggtccgagtaagagttggaaggaggaaattaaaatacttctttcaagttgatttcatccatgcacctgtacataggtagatagaaaatggacgcccttgtgagggaattgtatagtttttgcaaagatatattatatactaaggatatttcattaagcctcgggaagatttgaagatgtttcaggaaaaattgagctgaaagcttgagttgatatggaaggccctcatatcctcagcaatttcgctggtacgtttttttagtcagacgacctccacagaagcaacatgcttttaaagggaatctaagcatatattagcctttggtaaaaataaccttacaaagtcaatagtcaaatacacgtgccggaccatatttgggtaactgatctacgtcaacaggaaatccttgtatctgatatgcttgaatttgaccgcaagtggcttgagctacttttacatgcttacattccctttaagttctggttcgaacagtctcagtggaattttgattcgtatattttaagaaagatgaccaatgagtccatgctgttgttagtcaatgattgtcactctaattgcaataacaataacttcttatcataacgaattccagttgtaaagtttcgtttcgactgtacatgaatcactattacctccaagcagaaaccagggccaattcactgacttatgtaccaacgatatttacaattcatttgaattgagcttatttgttcttgatatctaaactgtacgaaacgccctgtctatttcctatcaaaatgtagcatttcaagaagttttgaagaaactgaactgtgcagggtttaagacgtagcaaggtagaaaacatccatgagtattatatatttttgaaatttttatataaattgtttatccgtgtaggttgttctgttgcaaatagattgcgttcttttaagagttagtcacatttataaccgtgcagttagaacctgcatataagaaaccacttgacaaggaactgcaccctgaaattttgattatatatgcaaattttattttcctcaatcagtttagaatttatagagcttttaatgttggtcaaagcttcagactcctcctctcgtatatcttttcataaaacttaaaaacactgaaattctgataataagcatgatatcaaaaatgctgtctctgggattttagcaaattacataaagttcccttcgatcaatagaccttttagctattctaaacaacattcgaatcgaacgatattttgataccttttgatgaattttcgaatgtgcacaatagtgatagaaggttcaatgccactcaatcgaacctcgcgtataaagatatataaaaataaagctggatcaaggctcttttgtagaatagctaaaaggtctattcagttgaaacagtggggcaataacattttgcacacttcgttttagaatttttccaaagattcaagccccatgctaaattgtatcgaagaacgtatgttctcagaggaatttaggaattttggtacgatgtgctgatgtaagattgtcgaagctgtttttggtgctagttagagtaaaaagatccgcgaaat

Transcript

scaffold8.g47.t1

TTCCACTGGCTTGCGGCTATTTACAATTTCGAACACTAAACGAAAGTGAGGCTTGGCCAAAGTGGGCTTGGTATGTATAGTAAGACCTTGTACTTAGCCAAGCCTCACTTCCCTTTAGTTTTCGAGCTTTCAAATGGCCGCCAGTCCAATGCAAGCCAACGGTCGAGTTTCAACTTGGAAAAACGAAGGATTATGTGGTTTGAAAAGCAAATCCAATGGAATAATAAAAAAAGTAAGAAAGACGAATGATCATTCTGGTATCTGGCAGTGTTTTTTGTTTTACActtaaagaacgtcggtcaaccagcatcctttgcagtcgcgctttgctgagcactgctatgtacgatgtcatatgaaaatggctaacgcagccgaaaggcaaagtgcgacgcgcgcagaggatgctggttgaccggcgttctttaaCTCTTCTTACGGCCCTTGGTCCCACCAACAAAAATAATTTTACAGGTAGTATTTAATTATGGGATTATTTATAGCTGTAAATAGAATAGGTCTTACTAGAAACAAATTATTTACCCCGATTCCATTACATTTAGGCCAAATAAATTTATTAATTCTACCCTTTCAAAAGGCAAGGCAGGCTGAGTCCCCCTGGTACCGCTCGAAGTACTCGTGGATAATTTCAATGCTGGTCGCAATTTTTTCAAATTTGTAATCTAACAACTATAGGAAAGAAATTGCCGTTATAATTTTGCTTTTACATAAATATCTGTTATCTCGATGTTCTCAAATATTTTTCTGCTAGTTGGAACGTTTCCATTTTGAGAAGTTGTTGATTTATATATCTTTCGATTTTATATTAAATCTGTTGTAATGACTGATATGTGTTCTACGTTTCAACATATGGATGTTAAAAATAGATTCATCTTCATTATGAAAACACCAAAACTTATTGGTAACCAATCCACCTATGATTTTATGGACCAATGTTTATCAAACACCTACGAAAATAAagacaaggcaaaagaccttacctaaattttttatcagccatttgataaccatttacgttccgttcataactatgtataacgttgttgattattgttctgactgattatcattcgcttacctactgtatataatatCGTATGAGCTAATTTGTTAGttattgttttgctaatgcatttattgttcttgttgttgttgttttaattcattcaatagctgttaaaAAAAGAAGAAATGTTTCCGGAAATTTGGGGTTCGTCTCCCAATGTTGGGAGCAAATGACGTAGCTAACAGATAACTAGTGCCCAGTCTCGAAATACCTCTGCGATGAGACAGAGCGAAGTGAAGGGTGAGGTTTTCATGGAAGAGTGTCTATCATCGTAGCTGCAGTGAAACCAAATGGCAAAGAAAGCATATGATCACTTGTTTAAATTGCTCCTTATTGGTGACAGTGGAGTAGGCAAAACATGCTTACTTTTCAGGTTTTCTGATGATGCCTTCAACACCACCTTTATCTCCACTATAGGAATTGATTTCAAGATCAAAACGGTTGAAGTTATGGGAAAGAAAGTGAAACTGCAAATATGGGATACAGCGGGACAGGAACGATTCCACACGATCACAACTTCATACTACAGAGGTGCCATGGGTATTATGTTGGTTTATGAAATCACAGATGAAAAGAGTTTTGAGAACATTGCAAAATGGCTGAGAAATATTGATGAGCATGCTAGTGAAGGTGTTGACAGAATGATTCTTGGTAATAAATGTGATATGGAAAACAAGAGAATGGTAGCAAAGAAAAGGGGTGAAACACTTCCAATGGTATTTGACCATGAAATGCCACAAGTGATGAAGTCAATTTCATCCATAACCCCTGGATACAACCCGAAGTTTGCTTGGATTGTGGTCAAGAAGAGGATCAATGCCAAATTTTTCTTGGAGGCAGGCAACAGACTTTCAAACCCTCCACCAGGAACAGTCATTGACAAATCTGTAACCAAACCGGAATGGTATGATTTCTTCTTGGTGTCACAGTCGGTTCGTCAAGGAACGGTCAGTCCAACACATTACAACATCATCACTGATACTTCTGGGCTGAAGCCAGATCACATTCAAAGGCTGACGTACAAGCTTACTCACTTGTACTACAACTGGCAGGGAACCATCCGCGTACCAGCACCCTGTCAATATGCCCACAAGCTAGCATTCCTTGTCGGGCAGTCAATACATACCGAGCCCGACATTGGGCTGGCAGATCGCCTTTACTATCTGTAAAGATACACAAGAAGGACTGAAAGTCGTTGTTTCAACGCTGTTTTGAAGAAGTGAAAGGCATGTGTCAAGCCAAAACATTGTTTTGTTCAGAATTTTGAAAAGTGGATAAGATTTATACGCTGGAGTACTTATTAATGGGCCCTTACTTCCGGTATTGTATATTTTGAATGTTTGAGGACCAATCGGTGTTCAAAATGGGAGTTTGATTTTGAGAAACAGTGTGACAACGATGTTACATCCTCTAAGACGGGCTCGGGAGTGATCCATTCGAGTGGTGGACCCTTACTCCTAAAGGATTGGCGAGATTGACGGTCCGAGTAAGAGTTGGAAGGAGGAAATTAAAATACTTCTTTCAAGTTGATTTCATCCATGCACCTGTACATAGGTAGATAGAAAATGGACGCCCTTGTGAGGGAATTGTATAGTTTTTGCAAAGATATATTATATACTAAGGATATTTCATTAAGCCTCGGGAAGATTTGAAGATGTTTCAGGAAAAATTGAGCTGAAAGCTTGAGTTGATATGGAAGGCCCTCATATCCTCAGCAATTTCGCTGGTACGTTTTTTTAGTCAGACGACCTCCACAGAAGCAACATGCTTTTAaagggaatctaagcatatattagcctttggtaaaaataaccttacaaagtcaatagtcaaatacacgtgccggaccatatttgggtaactgatctacgtcaacaggaaatccttgtatctgatatgcttgaatttgaccgcaagtggcttgagctacttttacatgcttacattccctttaaGTTCTGGTTCGAACAGTCTCAGTGGAATTTTGATTCGTATATTTTAAGAAAGATGACCAATGAGTCCATGCTGTTGTTAGTCAATGATTGTCACTCTAATTGCAATAACAATAACTTCTTATCATAACGAATTCCAGTTGTAAAGTTTCGTTTCGACTGTACATGAATCACTATTACCTCCAAGCAGAAACCAGGGCCAATTCACTGACTTATGTACCAACGATATTTACAATTCATTTGAATTGAGCTTATTTGTTCTTGATATCTAAACTGTACGAAACGCCCTGTCTATTTCCTATCAAAATGTAGCATTTCAAGAAGTTTTGAAGAAACTGAACTGTGCAGGGTTTAAGACGTAGCAAGGTAGAAAACATCCATGAGTATTATATATTTTTGAAATTTTTATATAAATTGTTTATCCGTGTAGGTTGTTCTGTTGCAAATAGATTGCGTTCTTTTAAGAGTTAGTCACATTTATAACCGTGCAGTTAGAACCTGCATATAAGAAACCACTTGACAAGGAACTGCACCCTGAAATTTTGATTATATATGCAAATtttattttcctcaatcagtttagaatttatagagcttttaatgttggtcaaagcttcagactcctcctctcgtatatcttttcataaaacttaaaaacactgaaattctgataataagcatgatatcaaaaatgctgtctctgggattttagcaaattacataaagttcccttcgatcaatagaccttttagctattctaaacaacattcgaatcgaacgatattttgataccttttgatgaattttcgaatgtgcacaatagtgatagaaggttcaatgccactcaatcgaacctcgcgtataaagatatataaaaataaagctggatcaaggctcttttgtagaatagctaaaaggtctattCAGTTGAAACAGTGGGGCAATAACATTTTGCACACTTCGTTTTAGAATTTTTCCAAAGATTCAAGCCCCATGCTAAATTGTATCGAAGAACGTATGTTCTCAGAGGAATTTAGGAATTTTGGTACGATGTGCTGATGTAAGATTGTCGAAGCTGTTTTTGGTGCTAGTTAGAGTAAAAAGATCCGCGAAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02171 all species →	Piwi	Piwi domain	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003165 all species →	Domain	Piwi domain	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR050305 all species →	Family	Small GTPase superfamily, Rab	Interproscan
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001806 all species →	Family	Small GTPase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47980 all species →	LD44762P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0032593 all species →	Cellular Component	insulin-responsive compartment	Interproscan
GO:0032869 all species →	Biological Process	cellular response to insulin stimulus	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold8.g47.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.