Gene detail

Detailed information of scaffold8.g48.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold8:674135...706422
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold8.g48.t1

cattgtttctgtggctatcgcaatgtttctttggctatccattgttcacggcgcattttgattcgaatttcgaatttcgaacttcgatttgaataggatattttgggactcttgccctttgcaacaaatgcaaactttcagcctcgtacggatggtacttactcaactcgatatattcctaatctgttgttggatgacattaccccctgttcacctcttcctccaatgcattcgtctgtagcaaacagttctctgcagacaaccacacaaaccatagtaagacccgatggtattgccacctcattcatttcagacgaagaattttctttacgataatggctatctccctaaatcgtgtaaacgattataaacactcaacatgatatatcgctttgcgcgttataaatgttaccctgttgagtttgtaccacacctagaagtgaaaatagggacctccatagaaggcttctattgtgggccttttggggcccaagtttattcatgcaggatgctgcagaaaccactgctttcctgttgcagagctcttggaatctgttaactttgaacaagaagacctcctgagcaggtgttaagtgcggggtttgagatggcctaattttatttagttataaagatcccaagcccagtttttcctccacatagtttttacctctgcacagggacgccggacagagcacatattagggaggggggggggcaaactgcaaatttgagggcaaaacaataggaaaataaaaaatttcggccatttgaagagcgcaggggggggggggccgccctcctctccggcgttcctgcctctgcacactgcatacctctagcgaaagcttttactgcaggagtttcgaacaggcaatatccatatcctagaagcttcaaatcccattcttttctgtcattgtgtcatgtagttcaatgaatagctcttacaacgagaatccactcaagccgcaaagtgcacaacaaacattgctcctccacagataccgcttttcgccgtgtctcacttgcagaagccgcatttcgtttgctttagagggctccctgtgtccactcttgtgaatgtaaaactattagctctaaacaaggtgctcaatccgctctgcatggagcactaaacccgaagaccttattatgggccccaacacattgcctttgtgcgtaaatctaaagaaatgttcacggtcagaacaatatgagccttgtacccttgtacccttgaaacataatacgtgaataggattttagtcattgccccctgattagctaaaagccacaagtaaatgatgtagctatcgatcatatgaatattaaaggggcttttattactccaaaggaaatgtgatatgatctaaatgaattccagattcgattgattgttctcatttgaaatgatatgttcggtgatgaaaatacctctttgatcagctgccttgctgtgtgtgtgccctcgtgggatttacttcattttcgcgcactgctataactgctcaactgcaatcgcgagcagttacaaagcctaaaccaagactacgtcaaagtttgttcttggaaaatggccgcagttgcgaaacaccggactatgtgtggctggaacgatgttccatgccttctggacgaactggaaaatgatgacgaggaaatgatgctctgcacttccaggtgtctaaaagtccacacatcagcaagcttgggggaggacgtttggaaaaggctaggcctccctcctactccccctcgatcacccaccaagtccattggagaaacgacccaaaatatctcaactgtgtcagaacgtttgcaactcgtctcagaaagtctggatgaatttgttgacctctctgaacgtataccatgcttcgactcgattagccttcgatcgaagttgatccaggattgtatgtggaatggaacgaacaaaaccgattcaaatgacatcgatgctatctacgacaccccctgcgctaccccacctccattggactattcaagtaccgattgtgtcgaccccactgcggtgttccccaacccgctaaacgaagaacatggacaaagtcaacaagaagatacagatgaagaaatcgacgttgtttcagtagacaaacctaaacctgaactgaaacgaaaactatcggagccttacaacagacaatctccgaaaacttcgaacaggaagattctgaaaagagcgacaagcgtaccggttgcaacaaacagccgatcattaaaacgagcattcgacgattcctcttcagatacttcaaattccgcgtgtgcaaatggtgaagagtcagactccgacaagagagcatcgcacaatgttctggaacgaaaacgaagaaacgaccttaaatcgagtttccacacactgcgaagttatgtgcctaatttgagtacccaagaaaaggccgcgaaagtcatcatcctaaagaaagctactgattatattcatgaactgcgtaacgatgaagattcccttgcgagggaaaaggacgatttgaaggcaaggcagagagaacttcttgagaaattcatcaaactgaaacccaaggtgtaaatgtttgtttttgaacactcttgatgatgttcaaaagacagacgattacgctaaacatggcgacgagaaactttacgcaagatgcaatgcgtacgaatctctacttatttatattggggattctactatagaacgtaatgcatcctgttcgaaagctcttcgcctccatctttatcgtgatcgtgtcgtgtaacagccaactctggccggtcagagtttaggcccttttgagtcgtagtttaataactcacagccgggatggaaagtttgtgtttcgtgccccaaaatttgacgccaaaaagtcagctagttatttctgtcattcactactttatttgaaagtaaggtaggaagttttctagctatttaaacctaatttaggcctacttttcatgttgcatccaggcatgggactcctattttagcgtccttgcgaaggacggaaatcccttccaaaggacactagaaactatgaactacgctagaaaatgaaagaaatgtattattgtcgagacagaaaatatcgtgccagaccacaccgataccctcaacttctctgccaacacgccaaggtatctgtctctctctacaaagatctttgtcacactttcaaactttccattgcggtttttagctcattcaccacttgtcatcttccccatgtatggttgaggcgaggcccaagtttcgttacacattttcattcaattttatgctgaagtaatcttaaattccatttaatctgctatcaaatctaatctgctattttatctgctatctgtttccctaacatagtaacatagcagattgttgaaatgtgaagattactttgcaaagcgaaagtcgaaactacgaaaagcattccgtagtcccataccagtgtcccaaaataatcgtaattcggttgatttgcattccgaaagcttgggacggtttagctcttgattacagaccgcagaattccaagaagttcttttggcctaatccctctgtcgtgaaaatcagagctcctttcatcccttcgcctgctcttccctgaatggagacgatgacaagtataaacatttgagttcatattttatccctctgcatgttcatgtatactttttggaactgaatcttgcgttttgttgagaccaagaagttgtccacgaggctgatgctaaatttaggcccaaaaactttacatcatcatttggagctttattgcatgccttgcacccgagatctggtcgaaaactgccttgtgtatttctttcatttagtggaatgccttgtaaagcgaaggccgtcgagaaaacttgcttactctgttggtccctttttcttaggtgtaaatattgcgtatttgtgtttgatatctaggagattttcaaattgatgacgacttactaaagtccaaaacaagacagcatggcctgtcagagctttatgggcagtggcggatttagagagcaagtgggggcaactgcccccttcacgatgaaaactctgtttggtgccccttttttggcgtgaaaaacgcgcctcatcctaacgcacaattttttaactgtttcgatttaaatatggggaaacatataaatgaaggcgttatctaatagaaaatcaaacagtttcctctaataaacgtccaaaaaattttcgcacgcctttggcgcgattactttctttcctatttgtggcaccctctttgcaagttgccccctttcaactttgggttggatccgcccctgtttatgggtttcccgaagttacccaaatctttttatgtggactgctattgtaggtctctaatgtagaatttgtacagatattccttgaaagattcaaagatggtttcctaaagcctaggacgagacaaatttatcaaagcaaaacatactatagacgagagttttggaacgtccaaccaagggccgcaggaagattttagtgtaaaagaaaaaaccatgccagatatggttctttgctgattattctcttggcttgcttttc

Transcript

scaffold8.g48.t1

CATTGTTTCTGTGGCTATCGCAATGTTTCTTTGGCTATCCATTGTTCACGGCGCATTTTGATTCGAATTTCGAATTTCGAACTTCGATTTGAATAGGATATTTTGGGACTCTTGCCCTTTGCAACAAATGCAAACTTTCAGCCTCGTACGGATGGTACTTACTCAACTCGATATATTCCTAATCTGTTGTTGGATGACATTACCCCCTGTTCACCTCTTCCTCCAATGCATTCGTCTGTAGCAAACAGTTCTCTGCAGACAACCACACAAACCATAGTAAGACCCGATGGTATTGCCACCTCATTCATTTCAGACGAAGAATTTTCTTTACGATAATGGCTATCTCCCTAAATCGTGTAAACGATTATAAACACTCAACATGATATATCGCTTTGCGCGTTATAAATGTTACCCTGTTGAGTTTGTACCACACCTAGAAGTGAAAATAGGGACCTCCATAGAAGGCTTCTATTGTGGGCCTTTTGGGGCCCAAGTTTATTCATGCAGGATGCTGCAGAAACCACTGCTTTCCTGTTGCAGAGCTCTTGGAATCTGTTAACTTTGAACAAGAAGACCTCCTGAGCAGGTGTTAAGTGCGGGGTTTGAGATGGCCTAATTTTATTTAGTTATAAAGATCCCAAGCCCAGTTTTTCCTCCACATAGTTTTTACCTCTGCACAGGGACGCCGGACAGAGCACATATTAGGGAGGGGGGGGGGCAAACTGCAAATTTGAGGGCAAAACAATAGGAAAATAAAAAATTTCGGCCATTTGAAGAGCGCAGGGGGGGGGGGGCCGCCCTCCTCTCCGGCGTTCCTGCCTCTGCACACTGCATACCTCTAGCGAAAGCTTTTACTGCAGGAGTTTCGAACAGGCAATATCCATATCCTAGAAGCTTCAAATCCCATTCTTTTCTGTCATTGTGTCATGTAGTTCAATGAATAGCTCTTACAACGAGAATCCACTCAAGCCGCAAAGTGCACAACAAACATTGCTCCTCCACAGATACCGCTTTTCGCCGTGTCTCACTTGCAGAAGCCGCATTTCGTTTGCTTTAGAGGGCTCCCTGTGTCCACTCTTGTGAATGTAAAACTATTAGCTCTAAACAAGGTGCTCAATCCGCTCTGCATGGAGCACTAAACCCGAAGACCTTATTATGGGCCCCAACACATTGCCTTTGTGCGTAAATCTAAAGAAATGTTCACGGTCAGAACAATATGAGCCTTGTACCCTTGTACCCTTGAAACATAATACGTGAATAGGATTTTAGTCATTGCCCCCTGATTAGCTAAAAGCCACAAGTAAATGATGTAGCTATCGATCATATGAATATTAAAGGGGCTTTTATTACTCCAAAGGAAATGTGATATGATCTAAATGAATTCCAGATTCGATTGATTGTTCTCATTTGAAATGATATGTTCGGTGATGAAAATACCTCTTTGATCAGCTGCCTTGCTGTGTGTGTGCCCTCGTGGGATTTACTTCATTTTCGCGCACTGCTATAACTGCTCAACTGCAATCGCGAGCAGTTACAAAGCCTAAACCAAGACTACGTCAAAGTTTGTTCTTGGAAAATGGCCGCAGTTGCGAAACACCGGACTATGTGTGGCTGGAACGATGTTCCATGCCTTCTGGACGAACTGGAAAATGATGACGAGGAAATGATGCTCTGCACTTCCAGGTGTCTAAAAGTCCACACATCAGCAAGCTTGGGGGAGGACGTTTGGAAAAGGCTAGGCCTCCCTCCTACTCCCCCTCGATCACCCACCAAGTCCATTGGAGAAACGACCCAAAATATCTCAACTGTGTCAGAACGTTTGCAACTCGTCTCAGAAAGTCTGGATGAATTTGTTGACCTCTCTGAACGTATACCATGCTTCGACTCGATTAGCCTTCGATCGAAGTTGATCCAGGATTGTATGTGGAATGGAACGAACAAAACCGATTCAAATGACATCGATGCTATCTACGACACCCCCTGCGCTACCCCACCTCCATTGGACTATTCAAGTACCGATTGTGTCGACCCCACTGCGGTGTTCCCCAACCCGCTAAACGAAGAACATGGACAAAGTCAACAAGAAGATACAGATGAAGAAATCGACGTTGTTTCAGTAGACAAACCTAAACCTGAACTGAAACGAAAACTATCGGAGCCTTACAACAGACAATCTCCGAAAACTTCGAACAGGAAGATTCTGAAAAGAGCGACAAGCGTACCGGTTGCAACAAACAGCCGATCATTAAAACGAGCATTCGACGATTCCTCTTCAGATACTTCAAATTCCGCGTGTGCAAATGGTGAAGAGTCAGACTCCGACAAGAGAGCATCGCACAATGTTCTGGAACGAAAACGAAGAAACGACCTTAAATCGAGTTTCCACACACTGCGAAGTTATGTGCCTAATTTGAGTACCCAAGAAAAGGCCGCGAAAGTCATCATCCTAAAGAAAGCTACTGATTATATTCATGAACTGCGTAACGATGAAGATTCCCTTGCGAGGGAAAAGGACGATTTGAAGGCAAGGCAGAGAGAACTTCTTGAGAAATTCATCAAACTGAAACCCAAGGTGTAAATGTTTGTTTTTGAACACTCTTGATGATGTTCAAAAGACAGACGATTACGCTAAACATGGCGACGAGAAACTTTACGCAAGATGCAATGCGTACGAATCTCTACTTATTTATATTGGGGATTCTACTATAGAACGTAATGCATCCTGTTCGAAAGCTCTTCGCCTCCATCTTTATCGTGATCGTGTCGTGTAACAGCCAACTCTGGCCGGTCAGAGTTTAGGCCCTTTTGAGTCGTAGTTTAATAACTCACAGCCGGGATGGAAAGTTTGTGTTTCGTGCCCCAAAATTTGACGCCAAAAAGTCAGCTAGTTATTTCTGTCATTCACTACTTTATTTGAAAGTAAGGTAGGAAGTTTTCTAGCTATTTAAACCTAATTTAGGCCTACTTTTCATGTTGCATCCAGGCATGGGACTCCTATTTTAGCGTCCTTGCGAAGGACGGAAATCCCTTCCAAAGGACACTAGAAACTATGAACTACGCTAGAAAATGAAAGAAATGTATTATTGTCGAGACAGAAAATATCGTGCCAGACCACACCGATACCCTCAACTTCTCTGCCAACACGCCAAGGTATCTGTCTCTCTCTACAAAGATCTTTGTCACACTTTCAAACTTTCCATTGCGGTTTTTAGCTCATTCACCACTTGTCATCTTCCCCATGTATGGTTGAGGCGAGGCCCAAGTTTCGTTACACATTTTCATTCAATTTTATGCTGAAGTAATCTTAAATTCCATTTAATCTGCTATCAAATCTAATCTGCTATTTTATCTGCTATCTGTTTCCCTAACATAGTAACATAGCAGATTGTTGAAATGTGAAGATTACTTTGCAAAGCGAAAGTCGAAACTACGAAAAGCATTCCGTAGTCCCATACCAGTGTCCCAAAATAATCGTAATTCGGTTGATTTGCATTCCGAAAGCTTGGGACGGTTTAGCTCTTGATTACAGACCGCAGAATTCCAAGAAGTTCTTTTGGCCTAATCCCTCTGTCGTGAAAATCAGAGCTCCTTTCATCCCTTCGCCTGCTCTTCCCTGAATGGAGACGATGACAAGTATAAACATTTGAGTTCATATTTTATCCCTCTGCATGTTCATGTATACTTTTTGGAACTGAATCTTGCGTTTTGTTGAGACCAAGAAGTTGTCCACGAGGCTGATGCTAAATTTAGGCCCAAAAACTTTACATCATCATTTGGAGCTTTATTGCATGCCTTGCACCCGAGATCTGGTCGAAAACTGCCTTGTGTATTTCTTTCATTTAGTGGAATGCCTTGTAAAGCGAAGGCCGTCGAGAAAACTTGCTTACTCTGTTGGTCCCTTTTTCTTAGGTGTAAATATTGCGTATTTGTGTTTGATATCTAGGAGATTTTCAAATTGATGACGACTTACTAAAGTCCAAAACAAGACAGCATGGCCTGTCAGAGCTTTATGGGcagtggcggatttagagagcaagtgggggcaactgcccccttcacgatgaaaactctgtttggtgccccttttttggcgtgaaaaacgcgcctcatcctaacgcacaattttttaactgtttcgatttaaatatggggaaacatataaatgaaggcgttatctaatagaaaatcaaacagtttcctctaataaacgtccaaaaaattttcgcacgcctttggcgcgattactttctttcctatttgtggcaccctctttgcaagttgccccctttcaactttgggttggatccgcccctgTTTATGGGTTTCCCGAAGTTACCCAAATCTTTTTATGTGGACTGCTATTGTAGGTCTCTAATGTAGAATTTGTACAGATATTCCTTGAAAGATTCAAAGATGGTTTCCTAAAGCCTAGGACGAGACAAATTTATCAAAGCAAAACATACTATAGACGAGAGTTTTGGAACGTCCAACCAAGGGCCGCAGGAAGATTTTAGTGTAAAAGAAAAAACCATGCCAGATATGGTTCTTTGCTGATTATTCTCTTGGCTTGCTTTTC

Protein

Gene family

Family type	Membership / link
Transcription factor family	bHLH · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01056 all species →	Myc_N	Myc amino-terminal region	Family	Interproscan
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR012682 all species →	Domain	Transcription regulator Myc, N-terminal	Interproscan
IPR050433 all species →	Family	Myc family transcription factors	Interproscan
IPR002418 all species →	Family	Transcription regulator Myc	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45851 all species →	MYC PROTO-ONCOGENE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04377	MYC; Myc proto-oncogene protein	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.