Gene detail

Detailed information of scaffold8.g59.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold8:902414...921253
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold8.g59.t1

ctgtggaaagaaataataatcaaaaagagattatgtagcttaagaacatttatgtagagtatttttgtttctaaaataaaaatttgaaaattgtgatctatttgtgtgaataaacaaagaggaagatttttcgagggatacataaagccagtggctgtttttatcgacagttcacttcggacgagcaataaagaagtttgaagagcagtggaattgaaagacaacaaactaaagtgttaaaagcatttacgattgggcaatcggcagacgatccgagaagaaggtggacaatctaagaagaaggaaggagtggtgatcatttgctgttggtgaaagaaagatgcaaagtgtttggaagatggaaggtagctggaagatcttcgtcgtcgttctggggttgactctgatcatcggatgcagttgtaaaccaacgaaagaaaatgagcgaaacgacgtaacggcagatgatatggagattgaggaagtagaagacagtggaattgcggaggacaaaaatccatttgatatcttggaggagattaatgaggctcacgatttgacaggcttataccaaggcgatatcctaatcatgaaagacaaaacgaaattgtctgacatctcaggaggccaagaagaactcgatgaagctataaatgaaaagagaaatgtcaggaatgacaaaagatatctctggactggcaaagttgttccatttcttattgacccctccgtccaatacctggaatacttgctaaacgaggcaatgaatgagatatcaaacaaaacatgcgtcaaattcaagaaaagagaaagtgaaacaaactatgtgaaattttttcaaggacaaggatgctattcctacatcggaagatattttactggcataaatacaatttcaattggaaagggatgcaataaaaaaggcatcatacagcacgagatcatgcattcccttggtttttggcatgagcaagcaagatctgatcgcgataaatttattgaaatctattgggaaaatatcaaacaaggtacgacaaccaatttccaaaaagcagaaaaccaagaaatgcttactgattatgattataacagcgtgatgcattatgggccatactcattctctgcgaatggcaagaagacgattgttcctatatctaatccaaatgcgataatcggacaaagagatggaatgagcccacaggatatcattgaaatcaatgcattgtatgattgcaaaagcacgtcgactgacttctacagcagttggggaaactggcaaccatgtaactcgggctgtataaaacaaagacaaagattttgcagtcatacagatttgacgaagtgtcctaatgttgattattttggagttgaaacagtattaaaacaatgtacacatgatgaatgttataaacccgttgatggacactggggacaatggtcgtcatggacatcctgcagcaaaacttgtgactggggtacaaaaaaacgtagccgtgcttgtaaccaaccagcccccaaaaatgggggcaagagttgtgtaggggctgcagaagggacctcaaactgtaaaaagatatcctgcaatcttggccctgacgattgcgaatttgaaaatggtttgtgtttctgggtgaatgttaaaaatgatcaactggactggacgagacgcagcggatcgacaccaagccagaatacaggacctagtggagatcatacttctggagatggctactacatgttcttggaggcatctagccccgctgccactggcaatacagcgatcttagaaagcaacacaatgaaaaaaccagcctcagggaagaaatgcctcatcttctggaaccacatgtatggagaatggatgggggaattaaaagtgaaaatgaaggatatagcaacaggaaagataagcattttgaaaacactcaaagggaacaaaggcaataagtggaataaagaagaattactgtttgttgtcaatggcaacccaggaagcaaacctttaggaatggaagacaaaagaatcaaagattggcagatctccgcatcatcacattgggacaacgatcacaaatcattttatgctagacttaatcaaccagggccttatcagtggtgcgcaagttggaacaaacatggcacagatcaatacgttagggttgatttcgacaagaggcagcttatttcaggggtagcagtgcaaggtcaagcaacctatgacaactgggtgacgtcgtataaagtaaaatacacggaggacagttacacatggaaaacttatcgagaaagtggcatcgataagatattcattggacctaacgaccggagtactcctgcgaggcagactttcatcaacatgattcgggcatttggcataatgatcaacccacaaacatatcatggaaatgacatttgcatgagaatcgaactttatggaattgaggacactgtgcagcctgcgaaaccagctggctgtaagaataatgtgaaggcgcttggtatggcatcgaggcacattcctgactcaagtattacagcaacctcgatttgggattcagaccaccaggcatataatgggagattgaactatttcaaagtctggtgtgcttatccaaagaaggattataccaacgaatatttcatagttgactttgggaagccaatgaagatattcgcagttgcaactcaaggacaacaatcatggaacaattacgtcacatcctatgaggttacttatggtcttgatggtacacattattacaatattcccaaagattatgtgacatttcaacctcttatccttactggcaacagtgaccgaaatgggatagtcaaacataagctgccatctgcaataacagcaagatacgtgcgaattcacccactcaaattccatggggctgatgtttgcctacgagctgaattttatggctgtgagcctgagtgaggatggagaaatgaaacttgatttattca

Transcript

scaffold8.g59.t1

CTGTGGAAAGAAATAATAATCAAAAAGAGATTATGTAGCTTAAGAACATTTATGTAGAGTATTTTTGTTTCTAAAATAAAAATTTGAAAATTGTGATCTATTTGTGTGAATAAACAAAGAGGAAGATTTTTCGAGGGATACATAAAGCCAGTGGCTGTTTTTATCGACAGTTCACTTCGGACGAGCAATAAAGAAGTTTGAAGAGCAGTGGAATTGAAAGACAACAAACTAAAGTGTTAAAAGCATTTACGATTGGGCAATCGGCAGACGATCCGAGAAGAAGGTGGACAATCTAAGAAGAAGGAAGGAGTGGTGATCATTTGCTGTTGGTGAAAGAAAGATGCAAAGTGTTTGGAAGATGGAAGGTAGCTGGAAGATCTTCGTCGTCGTTCTGGGGTTGACTCTGATCATCGGATGCAGTTGTAAACCAACGAAAGAAAATGAGCGAAACGACGTAACGGCAGATGATATGGAGATTGAGGAAGTAGAAGACAGTGGAATTGCGGAGGACAAAAATCCATTTGATATCTTGGAGGAGATTAATGAGGCTCACGATTTGACAGGCTTATACCAAGGCGATATCCTAATCATGAAAGACAAAACGAAATTGTCTGACATCTCAGGAGGCCAAGAAGAACTCGATGAAGCTATAAATGAAAAGAGAAATGTCAGGAATGACAAAAGATATCTCTGGACTGGCAAAGTTGTTCCATTTCTTATTGACCCCTCCGTCCAATACCTGGAATACTTGCTAAACGAGGCAATGAATGAGATATCAAACAAAACATGCGTCAAATTCAAGAAAAGAGAAAGTGAAACAAACTATGTGAAATTTTTTCAAGGACAAGGATGCTATTCCTACATCGGAAGATATTTTACTGGCATAAATACAATTTCAATTGGAAAGGGATGCAATAAAAAAGGCATCATACAGCACGAGATCATGCATTCCCTTGGTTTTTGGCATGAGCAAGCAAGATCTGATCGCGATAAATTTATTGAAATCTATTGGGAAAATATCAAACAAGGTACGACAACCAATTTCCAAAAAGCAGAAAACCAAGAAATGCTTACTGATTATGATTATAACAGCGTGATGCATTATGGGCCATACTCATTCTCTGCGAATGGCAAGAAGACGATTGTTCCTATATCTAATCCAAATGCGATAATCGGACAAAGAGATGGAATGAGCCCACAGGATATCATTGAAATCAATGCATTGTATGATTGCAAAAGCACGTCGACTGACTTCTACAGCAGTTGGGGAAACTGGCAACCATGTAACTCGGGCTGTATAAAACAAAGACAAAGATTTTGCAGTCATACAGATTTGACGAAGTGTCCTAATGTTGATTATTTTGGAGTTGAAACAGTATTAAAACAATGTACACATGATGAATGTTATAAACCCGTTGATGGACACTGGGGACAATGGTCGTCATGGACATCCTGCAGCAAAACTTGTGACTGGGGTACAAAAAAACGTAGCCGTGCTTGTAACCAACCAGCCCCCAAAAATGGGGGCAAGAGTTGTGTAGGGGCTGCAGAAGGGACCTCAAACTGTAAAAAGATATCCTGCAATCTTGGCCCTGACGATTGCGAATTTGAAAATGGTTTGTGTTTCTGGGTGAATGTTAAAAATGATCAACTGGACTGGACGAGACGCAGCGGATCGACACCAAGCCAGAATACAGGACCTAGTGGAGATCATACTTCTGGAGATGGCTACTACATGTTCTTGGAGGCATCTAGCCCCGCTGCCACTGGCAATACAGCGATCTTAGAAAGCAACACAATGAAAAAACCAGCCTCAGGGAAGAAATGCCTCATCTTCTGGAACCACATGTATGGAGAATGGATGGGGGAATTAAAAGTGAAAATGAAGGATATAGCAACAGGAAAGATAAGCATTTTGAAAACACTCAAAGGGAACAAAGGCAATAAGTGGAATAAAGAAGAATTACTGTTTGTTGTCAATGGCAACCCAGGAAGCAAACCTTTAGGAATGGAAGACAAAAGAATCAAAGATTGGCAGATCTCCGCATCATCACATTGGGACAACGATCACAAATCATTTTATGCTAGACTTAATCAACCAGGGCCTTATCAGTGGTGCGCAAGTTGGAACAAACATGGCACAGATCAATACGTTAGGGTTGATTTCGACAAGAGGCAGCTTATTTCAGGGGTAGCAGTGCAAGGTCAAGCAACCTATGACAACTGGGTGACGTCGTATAAAGTAAAATACACGGAGGACAGTTACACATGGAAAACTTATCGAGAAAGTGGCATCGATAAGATATTCATTGGACCTAACGACCGGAGTACTCCTGCGAGGCAGACTTTCATCAACATGATTCGGGCATTTGGCATAATGATCAACCCACAAACATATCATGGAAATGACATTTGCATGAGAATCGAACTTTATGGAATTGAGGACACTGTGCAGCCTGCGAAACCAGCTGGCTGTAAGAATAATGTGAAGGCGCTTGGTATGGCATCGAGGCACATTCCTGACTCAAGTATTACAGCAACCTCGATTTGGGATTCAGACCACCAGGCATATAATGGGAGATTGAACTATTTCAAAGTCTGGTGTGCTTATCCAAAGAAGGATTATACCAACGAATATTTCATAGTTGACTTTGGGAAGCCAATGAAGATATTCGCAGTTGCAACTCAAGGACAACAATCATGGAACAATTACGTCACATCCTATGAGGTTACTTATGGTCTTGATGGTACACATTATTACAATATTCCCAAAGATTATGTGACATTTCAACCTCTTATCCTTACTGGCAACAGTGACCGAAATGGGATAGTCAAACATAAGCTGCCATCTGCAATAACAGCAAGATACGTGCGAATTCACCCACTCAAATTCCATGGGGCTGATGTTTGCCTACGAGCTGAATTTTATGGCTGTGAGCCTGAGTGAGGATGGAGAAATGAAACTTGATTTATTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF00629 all species →	MAM	MAM domain, meprin/A5/mu	Domain	Interproscan
PF01400 all species →	Astacin	Astacin (Peptidase family M12A)	Domain	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR000998 all species →	Domain	MAM domain	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001506 all species →	Domain	Peptidase M12A	Interproscan
IPR034035 all species →	Domain	Astacin-like metallopeptidase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10127 all species →	DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold8.g59.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.