Gene detail

Detailed information of scaffold815.g5.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold815:51151...74884
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold815.g5.t2

gctatccaaaacgagactattacgccagaccgagatcgctcttactgggactcataatattacggcaatatttttggactgacttttttcacttttgaacgcccttgggaacgaggctgctatacacagtcatgtacaaagtatacaacaaatacaacgccattagagaatttctgcagattcgattgattgatattgaccaacggaaactcgaagctcaaagcagtgtttcaaagagcttggccggacagaacaaagtcttacgaacaagaataccatgaaaacagttggcgacaatatcaaattttgtgcgtaggtactattttgctgcttttgctaagcattaactgatttattgtgaagttttcaaatcaatgtgtttcatttgaaaactacacatttttgtgcttttctgcgcctaggcccttatcgaaacgaagcaggcatagtcatttcaaaataatggcgtttgattatgagtcgtagttaggagcgtccggcagtatttcaatagcgataactacgaccatatcatcagtctacatggcagctataaaactaaaataaactaaactaacacacaatattaaatacaaattacagtaacagtaaaaatttgaacgaaagactgtgaactaaataaaaagagagagaaatgaactgaaatgtatcaaataaagctacggtgaaatgtaaaatagcagcaacaaaaaaaattattataaattttataaatttatgaattattttaaattgttagctctaatattatatcgaataaaaatgaatttacaacaacagcggtttcgtttatcaaagtgacatgcattcatgaagggcacaaagctatcagtaaattgttccaatttttggtctaccataatctgcgtctttgaaaaactccgcgaaattcttgataggaagtgacgtcaagcacatgcaattcaattcaatcgatcttgtttaataaacaacagaaaaaattctgactgaagcaacaaacaagtctacaaacgaaactggtaaagtttgaagcatcgtttctacgataaatgaacgagaaagaagctcgctgctgaatgaacaacttatttcatcattgaagtacacacgttgcaagttgcagaattttcgctctgaagcgaaaacgacagccgctttttgaaggtacaagaacaagatgagtggagtttccagcttagatgatagctttgaaggaaagaaagttgcagttgtaggcagtggactgattggtagatgctgggcaattgtacgtataggaatatctcttgttatcattaaagaaaaaattctgactgaagcaacaaacaagtatacaaacgaaactggtaaagtttgaagcatcgtttctacgataaatgaacgagaaagaagctcgctgctaaatgaacaacttattttatcattgaagtacacacgttgcaagttgcagaattttcgcgctgaagcgaaagcgacagccgctctttgaaggtacaagaacaagatgagtggagtttccagcttagatgatagctttgaaggaaagaaagttgcagttgtaggcagtggactgattggtagatgctgggcaattttatttgctagagctggctacaaagtatgtatgtatgacgtagaagagacccagataacaaatgctttgcaaagttgtagaagtcagctgatacaaatggagaaagatggcttcctggataaaaacaaactatcagctgatgatgtcatggaatcggtttcaggatcatcaaatctgagacaagttttagctgatgcattttatgtccaggaatgcacaccagagaatttggaactgaaaaagcatgtcttttctgagctaagcaaatttgtggatgaaggaacgatcattgcaagctcaacttcttgtttgatgccatcattattcactgaagatctgcctaatcgataccattgtattgttgcacatcctgtaaatccacctcatcttgtgccacttgttgaattaatcccgtcgccctggacggaccctgaagtgatagaaacaacgaaaaaactcatgattggtattggccaatcaccagtcgttgccaagaaagaagtcaatggttttattcttaacagattgcaatatgctttattgatggaggcatggagattggtcgaggatggagtttgtacaccagaagatgttgacttaacagtaagcaaaggattgggcctaagatacgccatcatgggaccatttgagacaattcacctcaatgctgcaggcgtcaaggattactgcgaaagatatggctcgaacattgagaaaatttgtacagaggaaggggggcctaggccattgaaaggagaaactgctgaaaagattcataatgctatgtgtgacgttatcccggtcgagaaacttgatgaaaggagaaaatggcgagatacgaaactgggtgagttgttcaaacttcaaaattctaaaaacctgaaacactgaatttgagagtttgtaaatttccagttgtgaacttgttgtattaatccttttctatgactttgattgctaatgtaaatgtttgtatgtacatttttggaaagttatatatgattggttgttacagtaaatagagagctgaaagttggaatttgcaattataaagtcctggccaagtgagcaaatattgcttgccaattttctgctttgctttccaaacattattttcccgttcggccacattgcaaaacattgcttaacaagcagaattgaagtaagcaacctgagctaaaagttgaactctcatacaaggggtctcatgaaaataggtggtaatcaatgtttttgcaagaagtgatctctgctcctttccgaatttcatgctcccatttttgagacccttagcaaaaagaggattaaaagaacatcttagatcgttcctttctcgcaaattctcacacagttagattggagtatagggaaatctgtggcttgcaagaagatatatatcttggaacattggttggaaagcgcagctttaatatatattttaacactaggaccatcttgagggtcatttcagagaaagacaagtcagtatcgtagtttattaaatcgacatttccaattaattaagacattaagacaaa

Transcript

scaffold815.g5.t2

gctatccaaaacgagactattacgccagaccgagatcgctcttactgggactcataatattacggcaatatttttggactgacttttttcacttttgaacgcccttgggaacgaggctgctatacacagtcatgtacaaagtatacaacaaatacaacgccattagagaatttctgcagattcgattgattgatattgaccaacggaaactcgaagctcaaagcagtgtttcaaagagcttggccggacagaacaaagtcttacgaacaagaataccatgaaaacagttggcgacaatatcaaattttgtgcgtaggtactattttgctgcttttgctaagcattaactgatttattgtgaagttttcaaatcaatgtgtttcatttgaaaactacacatttttgtgcttttctgcgcctaggcccttatcgaaacgaagcaggcatagtcatttcaaaataatggcgtttgattatgagtcgtagttaggagcgtccggcagtatttcaatagcgataactacgaccatatcatcagtctaCATGGCAGCTATAAAACTAAAATAAACTAAACTAACACACAATATTAAATACAAATTACAGTAACAGTAAAAATTTGAACGAAAGACTGtgaactaaataaaaagagagagaaatgaactgaaatgtatcaaataaaGCTACGGTGAAATGTAAAATAGCAGCAACAAAAAAAATTATTATAAATTTTATAAATTTATGAATTATTTTAAATTGTTAGCTCTAATATTATATCGAATAAAAATGAATTTACAACAACAGCGGTTTCGTTTATCAAAGTGACATGCATTCATGAAGGGCACAAAGCTATCAGTAAATTGTTCCAATTTTTGGTCTACCATAATCTGCGTCTTTGAAAAACTCCGCGAAATTCTTGATAGGAAGTGACGTCAAGCACATGCAATTCAATTCAATCGATCTTGTTTAATAAACAACAGAAAAAATTCTGACTGAAGCAACAAACAAGTCTACAAACGAAACTGGTAAAGTTTGAAGCATCGTTTCTACGATAAATGAACGAGAAAGAAGCTCGCTGCTGAATGAACAACTTATTTCATCATTGAAGTACACACGTTGCAAGTTGCAGAATTTTCGCTCTGAAGCGAAAACGACAGCCGCTTTTTGAAGGTACAAGAACAAGATGAGTGGAGTTTCCAGCTTAGATGATAGCTTTGAAGGAAAGAAAGTTGCAGTTGTAGGCAGTGGACTGATTGGTAGATGCTGGGCAATTGTACGTATAGGAATATCTCTTGTTATCATTAAAGAAAAAATTCTGACTGAAGCAACAAACAAGTATACAAACGAAACTGGTAAAGTTTGAAGCATCGTTTCTACGATAAATGAACGAGAAAGAAGCTCGCTGCTAAATGAACAACTTATTTTATCATTGAAGTACACACGTTGCAAGTTGCAGAATTTTCGCGCTGAAGCGAAAGCGACAGCCGCTCTTTGAAGGTACAAGAACAAGATGAGTGGAGTTTCCAGCTTAGATGATAGCTTTGAAGGAAAGAAAGTTGCAGTTGTAGGCAGTGGACTGATTGGTAGATGCTGGGCAATTTTATTTGCTAGAGCTGGCTACAAAGTATGTATGTATGACGTAGAAGAGACCCAGATAACAAATGCTTTGCAAAGTTGTAGAAGTCAGCTGATACAAATGGAGAAAGATGGCTTCCTGGATAAAAACAAACTATCAGCTGATGATGTCATGGAATCGGTTTCAGGATCATCAAATCTGAGACAAGTTTTAGCTGATGCATTTTATGTCCAGGAATGCACACCAGAGAATTTGGAACTGAAAAAGCATGTCTTTTCTGAGCTAAGCAAATTTGTGGATGAAGGAACGATCATTGCAAGCTCAACTTCTTGTTTGATGCCATCATTATTCACTGAAGATCTGCCTAATCGATACCATTGTATTGTTGCACATCCTGTAAATCCACCTCATCTTGTGCCACTTGTTGAATTAATCCCGTCGCCCTGGACGGACCCTGAAGTGATAGAAACAACGAAAAAACTCATGATTGGTATTGGCCAATCACCAGTCGTTGCCAAGAAAGAAGTCAATGGTTTTATTCTTAACAGATTGCAATATGCTTTATTGATGGAGGCATGGAGATTGGTCGAGGATGGAGTTTGTACACCAGAAGATGTTGACTTAACAGTAAGCAAAGGATTGGGCCTAAGATACGCCATCATGGGACCATTTGAGACAATTCACCTCAATGCTGCAGGCGTCAAGGATTACTGCGAAAGATATGGCTCGAACATTGAGAAAATTTGTACAGAGGAAGGGGGGCCTAGGCCATTGAAAGGAGAAACTGCTGAAAAGATTCATAATGCTATGTGTGACGTTATCCCGGTCGAGAAACTTGATGAAAGGAGAAAATGGCGAGATACGAAACTGGGTGAGTTGTTCAAACTTCAAAATTCTAAAAACCTGAAACACTGAATTTGAGAGTTTGTAAATTTCCAGTTGTGAACTTGTTGTATTAATCCTTTTCTATGACTTTGATTGCTAATGTAAATGTTTGTATGTACATTTTTGGAAAGTTATATATGATTGGTTGTTACAGTAAATAGAGAGCTGAAAGTTGGAATTTGCAATTATAAAGTCCTGGCCAAGTGAGCAAATATTGCTTGCCAATTTTCTGCTTTGCTTTCCAAACATTATTTTCCCGTTCGGCCACATTGCAAAACATTGCTTAACAAGCAGAATTGAAGTAAGCAACCTGAGCTAAAAGTTGAACTCTCATACAAGGGGTCTCATGAAAATAGGTGGTAATCAATGTTTTTGCAAGAAGTGATCTCTGCTCCTTTCCGAATTTCATGCTCCCATTTTTGAGACCCTTAGCAAAAAGAGGATTAAAAGAACATCTTAGATCGTTCCTTTCTCGCAAATTCTCACACAGTTAGATTGGAGTATAGGGAAATCTGTGGCTTGCAAGAAGATATATATCTTGGaacattggttggaaagcgcagctttaatatatattttaacactaggaccatcttgagggtcatttcagagaaagacaagtcagtatcgtagtttattaaatcgacatttccaattaattaagacattaagacaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02737 all species →	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF00725 all species →	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006176 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR006180 all species →	Conserved_site	3-hydroxyacyl-CoA dehydrogenase, conserved site	Interproscan
IPR006108 all species →	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013328 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR008927 all species →	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48075 all species →	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0050104 all species →	Molecular Function	L-gulonate 3-dehydrogenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold815.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.