Gene detail

Detailed information of scaffold82.g17.t1 in Morbakka virulenta

Genomic Location: scaffold82:542324...553491
NR annotation: XP_012560074.1, BET1-like protein [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold82.g17.t1

GGCAATGAAAACAGAAAATTATTGATGATAATAATGATCGAAGGGAACGAGATGAAATGGTACAAGTGAATGTTGGGACTAAGAAGAAATATTCAGCTATTGATGGTGTGTGATGGTATAGCTATATGATTATTTAGAAGATTTTTGGAAAAATCAAGCAGCAATGCAACTTGGTAACTCTAATAAAAATGGGAATAACCCAAAACCATCAGATAATCACTTAGAGACTGAAAATGAACAAATGGTGTCAAGTTTATCAAGCAAAGTGTCTCAGTTAAAATACATTGCTGTTGACATAGAGAGTGAAGCAAAATATCAAAATAAATTACAGCTAGGCTCCATGGAAGATGATTTTGAAAGTCTGAAGCAGTACATGGGATCCAGCTTTACCAGAGTAACCAATTTAGTGGCATCTGGCAGTAATAACAGACGTTTGATGTGTTACTTAATAGTCGCATTGGTTGGCGCATTCTTTTTATGTTACTACATTTTGGGGAGATTCTCAAGATGAATTACTATTATTTGTCAACCACGCTTTAGATTTACAGATGTAAAATTTTAGAGATGCAGCATCTGTACTTTAAGGTCTGTTAATCTATTTGAACGTTTATGTTGTCTGCGAAAAATATTAACTAACCTGAAACCAACATTGAGCAGAAGTAAAATAGCGATGATCTGCTAACCACACAGTATTTTTACTGAACAAACGAGTAATACTGAAGAATTCGAGCATAATAGTAAAATAATATGCCAGATAATTATTTTTTATGCAATTTCCAACATTTATGTGTAAAAATTTACTATTATGGAAATAAAATTTAAAATATGAAACTGCAAGGCCGGGTGCATTTCTCTATGGCGCTAACACTTTTCCGGACAACATCAAGTTACTTTTTGGATTACCAACTAACGATTAAGTATATGAAACGTGTTTTTCTTGACACTCAGAGGCAGTAAAAGCAGTTGCTAATGCCATGTTTGTATTTCTGATTAAGGAGAAGAAAAAGTTAGAACATAGAGATATTTCTTTTGTGTTGGTACAACAAATGATGGAATGTATTGGAATCTTTATTGCAAAGCTTTAAATACTTCATTAGCTTCGTCATTTGAGGAATACACGGGTCAAGAACCATTTTGTGTAGGCAGCAGGGAAAACCTGTTAGAATAAATGACAAAGTACACAAGTGCTCAGTAGTTACGACTTTTCACATTTGATGACAACAACTCTCTGCATTCCATTAACTTGAGCTTTATTTTTTTCCAAATTGTCACCATTTGCGTAGTCATAATTGTCACATTTCTTTAAATGGATACTTTTGCATCCTTTGGTTTCAGTACAAGCAAATAAAAAAGTGTCGTATATCCATCACCATGTTTTGTACCTGTATTGGAGgcatgttagctcgacgacactgattctttcattttttaaaaaactgtttggtcggatccagtgaaatattctcataggtttgggaaaactgctaggtccgcatactacttaaaagtgtttgacagctttttagcgagaaagtAACAGAGGGACTCGTAAATGAATTTATATCTCCATAGCCTGGTGACGTACTATACACTTCATAAATTCTCATTTGTAGATTTCGAAGACTGACTCAGCTAGCCAGCATCCTATGTAGACCGATAGTGGCGTGACACCCCCCTTCCTCTTAGTGTGCTCGGTGCAGTATGTCTTTTGCTTACCATAATGATGCTAATGATTAATCTTGTGATCAGTATTTGTCCTGTCATCTTCGGTCAGCATCATTGTTATTACCATGGATATTGAGTTTTCATTGTTTTGGTAACTCAATATTAAAACAAATTATATGCAATGTAAAATGGTGTACGTGTTGTCTTCGAGTTACAATAACATGGGAAAGTCAGTTTTCGAACAGGTAATGTAAAAGAGGAAGTCCAAGGGGAAAACTACATCGTTAATCCATTTTTGCCCACTGACATGCTTCCATCAACTTCAACTTAACCTCAGCACAAGAGACGAAACAGGAACTGAGCCTTGGCCTGGAACAATGCAAAGATAAAGATTCTCAGTCATTCAGAGGATAGAACTTGCATACCAACACTGCACTTGTGTTTCTAAACAGACAATATGTAAATAATAATACTGACCGAGAACAGTGAAATGCTTGTTAATGTAAGATTACCTTTATTAAGAGTCTAGAAATGTTGCGAAATTTGTACCTTGTGTATGAAACTTTAACATTCTGATTGTACAACTTGCAAGTAGGCTATTGCGTTCAGACTTTTATTAAAAGACGTTATTGGTA

Protein

Uniprot

Uniprot term	Description
Q68EL3	BET1-like protein OS=Danio rerio OX=7955 GN=bet1l PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR039899	Domain	BET1, SNARE domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12791	GOLGI SNARE BET1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005484	Molecular Function	SNAP receptor activity	Interproscan
GO:0031201	Cellular Component	SNARE complex	Interproscan
GO:0042147	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:2000156	Biological Process	regulation of retrograde vesicle-mediated transport, Golgi to ER	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08504	BET1; blocked early in transport 1	-	Membrane trafficking	ko04131	deepkoala