Gene detail

Detailed information of scaffold82.g46.t1 in Morbakka virulenta

Genomic Location: scaffold82:1559976...1562059
NR annotation: APW77280.1, SoxB2 [Hydractinia echinata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold82.g46.t1

CGTGTATTTGACCGCGGGATTATTATTCTGCTAGCATATTATATTCCAAGACGATCGATGCTCGCAGAGTTCTTTCTTTTGATGAACAATTCTTGAAAAGGGCGCCAAATGTAGAGTGTGAGAAAAAGCCAACAGAAAGTGATTGGATTGCTTGAGGATTTTATATTATAACGACACTGCGAAGAGCCTATGGACGAAAGAAAATCATTTTGAGTATTTTTGTTTCAATACAATTGATGTGGTCTTCCCCGTATTGATGATTGTTGATCACCAAACGTCGACAAAAGAATAAAACCTGAAACAAGATCGAAATAGACAGGTTGTGTATAAGTGATTAGGTTATCTTCACGGACTACACAACTGTTTGAACAATTCAGTCATTTGTAATTAGTGGCAATACCTTTAGTTATCTGGACAATAGCTTTTTATCCAGGGCTTGTTTTGAATACAGAATCGGATTTTTATTGAGACTTTTATTCAACTTTGGCTTCGTGGTTTTATGATCTGTGGTGGTAGAACTGTATACAAGTAAATTCAAAATGTTAAATAAATCAAACATGGTGAAATCAGAAGAAAATCACGTCAAAAGACCAATGAATGCTTTTATGGTTTGGTCGCGTGGAAAAAGGAGACAAATGGCCCAGGAAAATCCTAGAATGCACAATTCAGAAATATCAAAAAGGCTAGGTGCAATGTGGAAATGTCTTAGTCCGGAGGAAAAACAACCATTTATTGACGAAGCTAAGCGACTACAAGCTCTTCATATACAAGAGCACCCGGATTACAAGTACAAGCCTAAACGAAGGAAGCCCAAGCAAATTAAAAAAGATGCTCTGTATCCAGCGTACAACCCTATGAACGCTTCTATGATGACTATGGATGGCAAGTTTGCAGGAGCAATGGCTCAGATGCCACAAGGGCTTAATTTGAACATGAGTCCAAATGCCATGGGAGCTGATTCAATGTATGCAAAGCTGAATCAGGGAAACGCTTCTCTTTATCAATCAATGAATCCAGGATATCCAGTTCTGTACCCTAACTTTAATATGAACATGAGTTCACCGCCAAACACATCACCAAACTCGACATCACGGTTCGGCCAAGGAATGATGGTTGCTTCAAATGGGCAAGGAAGCAGTCCAGAAGAGGCAGTATCGCAACACTCGTATCGAACAAACCTTGGATCTGGTACAACTGATTATATGAATGGTAAACATTTCTACGCAAATCAGACAGGACAGTATCCGAGTCCGACTGCAACAAATAACGCCATGCAACAACGTTACCAGTCGATAGAAGACCAGCGATCAAGTTTATCTAACGTGGACCAAATTAGCAACAAACCAGGGAGCAGCACACCTACTACTAGTTACACTATGACTTCAAGTGAAAGCATGCACTCTACTGCCAACGGGCAACGTGGTGTATGGCAGCCACAGCCTGAGATATCAAGGCCAGTAGCCTATGTACCAGTTGTTCTTTAACTGTGTATGTTTTTTAGTGTTCTTACACATTTTTTATATATTTTCTGTTCTTTTTATATGACATTTAAATGTTTTATTTTGCAAGTAGCTTTTCATAGGTTGTACCTACGCTGTTGAAGGGGAACACAAGGGAATAAAGGTAGCATTCAAATTAAGAGCTTTTTACTGACAACTATATTGTCCGAAGACATCTCATTGGTATGtatatatgaatatatatatatatacatatatatatataatatataCTAGGCCTATAATTATTATGATAGTTTTATCACTTTATCACAGAAAGGGGTTGAAAGTAGTAGCTAAAAATGGCTTCTATGTTGTAGAATTTAATAGTAAACAGTTTACTGTCATCCGTTAGTTGCATTTTCTTCTGAAATATGAACCTACAATTTAAACAGTCGAAACCGCCAATGGTAATTCTCCGCACTTTATAACTCGTTAGAGATCGTACGCAAGTAAACAACTTCCATGGTTGATACGCATTGATGAATTCAGAGAGTTCTTAATCTGGTACGATGATTTACCCTTCAAGCTTTCTACATCCAAGGGTAGATTTCCTAGATAGGGGACTAAATAATATTGATTTAG

Protein

Uniprot

Uniprot term	Description
Q6NVN0	Transcription factor Sox-2 OS=Xenopus tropicalis OX=8364 GN=sox2 PE=2 SV=1
Q6RVD7	Transcription factor Sox-21-B OS=Danio rerio OX=7955 GN=sox21b PE=2 SV=1
Q20201	Transcription factor sox-3 OS=Caenorhabditis elegans OX=6239 GN=sox-3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR050140	Family	SRY-related HMG-box transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09267	SOX1S; transcription factor SOX1/3/14/21 (SOX group B)	-	Transcription factors	ko03000	deepkoala