Gene detail

Detailed information of scaffold83.g71.t2 in Aurelia aurita

Genomic Location: scaffold83:808761...822282
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold83.g71.t2

cagatttcgatttcacaacaactgggtttcgacatatccgactagagtactcttgtaaaatatcttcatttgtctgaagatcttcctaagaagtcaggcagcatggccacaaaatcacctcagtttgttgacgcagaagcagttgaaaagaacatggaccttgaaaagctgataacagcattagaaggaggatttgcaagcttttcagatgggcctaattcgggagtggtgcagccagtgagaagtgccgtcgaagtaaaagagcataatggtgttctccttacaatgccagcatactctgcaaaggacaatgcactagcaactaaactggtaacattgtacagtgacaatgcaaaacttgggattccatcacatcaaggaattgtcatcagctttgatccaaaaactggaactccaattgctttcctagatgccgagtccatcacaaatctacggactgctgctgcaacagctgtagccaccaaggcctgcggcgagcatcggactgtttttggtgatgaaatgagaaggggacatgtttcaaggcacctagcagcttctgatgccaagatactggcaataattggcagtggacatcaagcccatagccatgtaaagttactgaaacttgtgaggaatttctcagagataagagtatggagtcgaaattttgaaaatgccaccaaatttgcaacagaagtgaatggaaaagcatttcaaacgattgaagaaacagtcaaggacgctgatgtcatcgttactgtaacattatcaagagaaccagttttatttggaaaatgggtgaaagaagattgcctcgtaaatattgttggtgcttgccgacctgactggagagaagttgacgatgacgccatgctgaacagtcaagtgattgttgatactcgcgagggagcattgaaagaatctggagatgtgattttatctaaggcaacaatccttggtgaactcggtgatgtgatttcgaaatcagtttcaattgatttgtctaaaaggagagtgtttaaatcactcgggatggctctggaagatgcactggcagcaaagattgtgctcgaaaatatgcagaagaaaggatgagaataaattcaaggtatggacttgatatgtttccagagaaagtctaaattactgctgagcgactcagaaactaaagcctaaactaagaagtaggctatgaattaacctgaaagtcagatctgaggataggaattgattttaggcagaaagagaaataaatggacaaagagatgattttatagtgtcattgataaagcgaataaataatattacaaatttagatcacataagacagattttataattactttttatcttagatgaataaatgatacataatgtcaagatacgtttcaatgcaacctatagtccaaagccgttggtatgactagatcacgtcattgagtaattaattcatttatccctctcattcactcactcattctttcattcattcattcattcattcattcattcattcattcattcattcattcattctttcatccttattttgaattttgttttcactaactttcatatttcataccatccatttttcctattcacacttctttcattcagtgagacattcatttatccctctcattcactcactcactcattctttcattcattcattcattcattcattcattcattcattcattcattcattcattctttcatccttattttgaattttgttttcactaactttcatatttcataccatccattttttctattcacacttctttcattcagtgagacattcatttatccctctcattcactcactcactcattctttcattcattcattcattcattcattcattcattcattcattcattcattcattcattcattctttcatccttattttgaattttgttttcactaactttcatatttcataccatccatttttcctattcacacttctttcattcagtgagacattcatttatccctctcattcactcactcactcattctttcattcattcattcattcattcattcattcattcattcattcattcattcattcattcattctttcatccttattttgaattttgttttcactaactttcatatttcataccatccattttttctattcacacttctttcatttagtgagacattcattcattcattcattcattcattcattcattcattcatacatcgctagtcagcttagttgattcattaggacttttcccacttcccaactttaggcatttcattgttggttaaacagattttttacatgtatctttcaaatttttattaattgataaaagacaactttatcagtagactgagattgtttttggatagaaaaataattcatcaaaacatccatacgcttgaattaatgttcgagggattttggttatcgaaaatcctttccaaatcccatttggtttgccctgaaataaatgtcctattgccctcaactctgtatgttcttgcaatcagattccgagaaagcccgtcaatgttaacattgacgtcattactgttttcagcaacaatgagtcaattagaggtggtattgatattccatatccttacttgaatgcaagcaaccataaacagccattatcctt

Transcript

scaffold83.g71.t2

CAGATTTCGATTTCACAACAACTGGGTTTCGACATATCCGACTAGAGTACTCTTGTAAAATATCTTCATTTGTCTGAAGATCTTCCTAAGAAGTCAGGCAGCATGGCCACAAAATCACCTCAGTTTGTTGACGCAGAAGCAGTTGAAAAGAACATGGACCTTGAAAAGCTGATAACAGCATTAGAAGGAGGATTTGCAAGCTTTTCAGATGGGCCTAATTCGGGAGTGGTGCAGCCAGTGAGAAGTGCCGTCGAAGTAAAAGAGCATAATGGTGTTCTCCTTACAATGCCAGCATACTCTGCAAAGGACAATGCACTAGCAACTAAACTGGTAACATTGTACAGTGACAATGCAAAACTTGGGATTCCATCACATCAAGGAATTGTCATCAGCTTTGATCCAAAAACTGGAACTCCAATTGCTTTCCTAGATGCCGAGTCCATCACAAATCTACGGACTGCTGCTGCAACAGCTGTAGCCACCAAGgcctgcggcgagcatcggactgtttttggtgatgaaatgagaaggggacatgtttcaaggCACCTAGCAGCTTCTGATGCCAAGATACTGGCAATAATTGGCAGTGGACATCAAGCCCATAGCCATGTAAAGTTACTGAAACTTGTGAGGAATTTCTCAGAGATAAGAGTATGGAGTCGAAATTTTGAAAATGCCACCAAATTTGCAACAGAAGTGAATGGAAAAGCATTTCAAACGATTGAAGAAACAGTCAAGGACGCTGATGTCATCGTTACTGTAACATTATCAAGAGAACCAGTTTTATTTGGAAAATGGGTGAAAGAAGATTGCCTCGTAAATATTGTTGGTGCTTGCCGACCTGACTGGAGAGAAGTTGACGATGACGCCATGCTGAACAGTCAAGTGATTGTTGATACTCGCGAGGGAGCATTGAAAGAATCTGGAGATGTGATTTTATCTAAGGCAACAATCCTTGGTGAACTCGGTGATGTGATTTCGAAATCAGTTTCAATTGATTTGTCTAAAAGGAGAGTGTTTAAATCACTCGGGATGGCTCTGGAAGATGCACTGGCAGCAAAGATTGTGCTCGAAAATATGCAGAAGAAAGGATGAGAATAAATTCAAGGTATGGACTTGATATGTTTCCAGAGAAAGTCTAAATTACTGCTGAGCGACTCAGAAACTAAAGCCTAAACTAAGAAGTAGGCTATGAATTAACCTGAAAGTCAGATCTGAGGATAGGAATTGATTTTAGGCAGAAAGAGAAATAAATGGACAAAGAGATGATTTTATAGTGTCATTGATAAAGCGAATAAATAATATTACAAATTTAGATCACATAAGACAGATTTTATAATTACTTTTTATCTTAGATGAATAAATGATACATAATGTCAAGATACGTTTCAATGCAACCTATAGTCCAAAGCCGTTGGTATGACTAGATCACGtcattgagtaattaattcatttatccctctcattcactcactcattctttcattcattcattcattcattcattcattcattcattcattcattcattcattctttcatccttattttgaattttgttttcactaactttcatatttcataccatccatttttcctattcacacttctttcattcagtgagacattcatttatccctctcattcactcactcactcattctttcattcattcattcattcattcattcattcattcattcattcattcattcattctttcatccttattttgaattttgttttcactaactttcatatttcataccatccattttttctattcacacttctttcattcagtgagacattcatttatccctctcattcactcactcactcattctttcattcattcattcattcattcattcattcattcattcattcattcattcattcattcattctttcatccttattttgaattttgttttcactaactttcatatttcataccatccatttttcctattcacacttctttcattcagtgagacattcatttatccctctcattcactcactcactcattctttcattcattcattcattcattcattcattcattcattcattcattcattcattcattcattctttcatCCTTATTTTGAATTTTGTTTTCACTAACTTTCATATTTCATACCATCCATTTTTTCTATTCACACTTCTTTCATTTAGTGAGAcattcattcattcattcattcattcattcattcattcattcatACATCGCTAGTCAGCTTAGTTGATTCATTAGGACTTTTCCCACTTCCCAACTTTAGGCATTTCATTGTTGGTTAAACAGATTTTTTACATGTATCTTTCAAATTTTTATTAATTGATAAAAGACAACTTTATCAGTAGACTGAGATTGTTTTTGGATAGAAAAATaattcatcaaaacatccatacgcttgaattaatgttcgagggattttggttatcgaaaatcctttccaaatcccatttggtttgccctgaaataaatgtcctattgccctcaactctgtatgttcttgcaatcagattccgagaaagcccgtcaatgttaacattgacgtcattactgttttcagcaacaatgagtcaattagaggtggtattgatattccatatccttacttgaatgcaagcaaccataaacagccattatcctt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02423 all species →	OCD_Mu_crystall	Ornithine cyclodeaminase/mu-crystallin family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003462 all species →	Family	Ornithine cyclodeaminase/mu-crystallin	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR023401 all species →	Homologous_superfamily	Ornithine cyclodeaminase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13812 all species →	KETIMINE REDUCTASE MU-CRYSTALLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0042562 all species →	Molecular Function	hormone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18258	CRYM; thiomorpholine-carboxylate dehydrogenase	EC:1.5.1.25	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.