Gene detail

Detailed information of scaffold838.g5.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold838:57760...80054
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold838.g5.t2

ataggtcagcccgcttcagaaaatggccgtgtctccagacatcattttgagagcagccacatttcaagcgaggtattgaaagaagagacatcagcagacagtgtaacgacaatggaagctaccatggaaaaggaagattttgaagctaaatataaagagctcaaagcaatgaagagtcaacttgagcaagagtttggtttgaagagggcaaagttcaaatcaatgtaccttgattgtgaaggaaaacataggtcagccctcttaaaaaaagatggctgtgtttccagacatcatcttgagagcagccgcgtttcaagcgaggtattgaaagaagagacatcagcagacagtgtaacgacaatggaagctaccatggaaaaggaagattttgaagctaaatataaagagctcaaagcaatgaagagtcaacttgagcaagagtttggtttgaagagggcaaagttcaaatcaatgtaccttgattgtgaagctgaactaaaagaagaaaaggcaaagagggaaactttagaaaataggctcatagagcttgaagcagaaatctccagcatgagatcagacactgaaggaattcaagcagccgccagattatcagaagaggcaagacatgaagaaatcgctgcaatgaaagtcaaacatgtcgaagaagtgacatcaatggagcatatctggcaagaagctgtacgagaggccagagctaccacagctaaacattttgatgaagaatataagagactgttggcggccaatcagaaattagagcagcagataaaaggaaaatcagaagagaaacctgaaggaatcatgtccatggtgtcacaagcaattaaacgaggctctcaaacatctcctgcacagcaacaaccacagccacagcaagactcgtcagatgactcaagagatgttaaaattgttgataccatgaaggaggcgcaagaaaatgtagaagcatggaggtcgattgttatgccccttgaagaggaaattgcatcattgagagcgaagctgaaagacacgagttttaagctgaaacagtacgaggctaaggctgcgaagagcacgcttgaaggtggtggctcaagttcggcatctcctgtgcgactgcaagagcagctgaaggaactgcaaggatatttagatgcagaacgatcatcaaggactgatttagagatgttcattgctgtcctgaacacacaaaaaggtgtgctgcaggaagatgcagacaaactcagaagtgaattacataacgtttgtagacttctagaacaagaaaaaacagaccacagagatttaaaagaaacgtggagaaaagcgaatgaagaattcttagagcaacaaactatgctatgttgggaaattgaaaatatgcgagatttgatgaccccggctcagaatgagaaactttcaagacgatatagattgaagcattcgaaaccagctaaaagcaaacaagcaaaaactataaaaactgtggcagaggagccatacagtgttggaaatgcaagtgatgatttgataaaatttgatgacagcccaaagaaaggtcaagtgcaaataccgaagcctgtgacaccaagtgatgttcatttatctgagcggaaactaatctcatcagaaccctcaagcatcgacagcacggatgggagtcgggagagttccccttcaaaggtatctgtagatcgagttgtcagtttagaagaagcagaagagatcaaagaggagaccgatgctgttaaacctggtatgaggaagtctgcatctagttctgatattaacaaggaattagaaactgctcttagaagtttacaaaacgctccaccaattaaatccatcatacctctgggagaatttccaaacaaaatctattacttacaacttacgaaaacaagtattatgtgagcttcctcagaggtctcacacgataaaatatgggataaactccctaagatttaggggagctatgctgtggaataccttaaacgatgatgtaaagaatatagcgtctgttgcagctttcaaaaaggaaattaaaacttgggatggaaccagttgcctttgtacaatttgtaaatagacactgaattcctttgattgtaaattaacatgtattactttaggtttattgtaaatagttggtgtaaattagctttattcttttaaaactatgtaaataccaactttaaataaatatatgaaatgaaa

Transcript

scaffold838.g5.t2

ATAGGTCAGCCCGCTTCAGAAAATGGCCGTGTCTCCAGACATCATTTTGAGAGCAGCCACATTTCAAGCGAGGTATTGAAAGAAGAGACATCAGCAGACAGTGTAACGACAATGGAAGCTACCATGGAAAAGGAAGATTTTGAAGCTAAATATAAAGAGCTCAAAGCAATGAAGAGTCAACTTGAGCAAGAGTTTGGTTTGAAGAGGGCAAAGTTCAAATCAATGTACCTTGATTGTGAAGGAAAACATAGGTCAGCCCTCTTAAAAAAAGATGGCTGTGTTTCCAGACATCATCTTGAGAGCAGCCGCGTTTCAAGCGAGGTATTGAAAGAAGAGACATCAGCAGACAGTGTAACGACAATGGAAGCTACCATGGAAAAGGAAGATTTTGAAGCTAAATATAAAGAGCTCAAAGCAATGAAGAGTCAACTTGAGCAAGAGTTTGGTTTGAAGAGGGCAAAGTTCAAATCAATGTACCTTGATTGTGAAGCTGAACTAAAAGAAGAAAAGGCAAAGAGGGAAACTTTAGAAAATAGGCTCATAGAGCTTGAAGCAGAAATCTCCAGCATGAGATCAGACACTGAAGGAATTCAAGCAGCCGCCAGATTATCAGAAGAGGCAAGACATGAAGAAATCGCTGCAATGAAAGTCAAACATGTCGAAGAAGTGACATCAATGGAGCATATCTGGCAAGAAGCTGTACGAGAGGCCAGAGCTACCACAGCTAAACATTTTGATGAAGAATATAAGAGACTGTTGGCGGCCAATCAGAAATTAGAGCAGCAGATAAAAGGAAAATCAGAAGAGAAACCTGAAGGAATCATGTCCATGGTGTCACAAGCAATTAAACGAGGCTCTCAAACATCTCCTGCACAGCAACAACCACAGCCACAGCAAGACTCGTCAGATGACTCAAGAGATGTTAAAATTGTTGATACCATGAAGGAGGCGCAAGAAAATGTAGAAGCATGGAGGTCGATTGTTATGCCCCTTGAAGAGGAAATTGCATCATTGAGAGCGAAGCTGAAAGACACGAGTTTTAAGCTGAAACAGTACGAGGCTAAGGCTGCGAAGAGCACGCTTGAAGGTGGTGGCTCAAGTTCGGCATCTCCTGTGCGACTGCAAGAGCAGCTGAAGGAACTGCAAGGATATTTAGATGCAGAACGATCATCAAGGACTGATTTAGAGATGTTCATTGCTGTCCTGAACACACAAAAAGGTGTGCTGCAGGAAGATGCAGACAAACTCAGAAGTGAATTACATAACGTTTGTAGACTTCTAGAACAAGAAAAAACAGACCACAGAGATTTAAAAGAAACGTGGAGAAAAGCGAATGAAGAATTCTTAGAGCAACAAACTATGCTATGTTGGGAAATTGAAAATATGCGAGATTTGATGACCCCGGCTCAGAATGAGAAACTTTCAAGACGATATAGATTGAAGCATTCGAAACCAGCTAAAAGCAAACAAGCAAAAACTATAAAAACTGTGGCAGAGGAGCCATACAGTGTTGGAAATGCAAGTGATGATTTGATAAAATTTGATGACAGCCCAAAGAAAGGTCAAGTGCAAATACCGAAGCCTGTGACACCAAGTGATGTTCATTTATCTGAGCGGAAACTAATCTCATCAGAACCCTCAAGCATCGACAGCACGGATGGGAGTCGGGAGAGTTCCCCTTCAAAGGTATCTGTAGATCGAGTTGTCAGTTTAGAAGAAGCAGAAGAGATCAAAGAGGAGACCGATGCTGTTAAACCTGGTATGAGGAAGTCTGCATCTAGTTCTGATATTAACAAGGAATTAGaaactgctcttagaagtttacaaaacgctccaccaattaaatccatcatacctctgggagaatttccaaacaaaatctattacttacaacttacgaaaacaagtattatgtgagcttcctcagaggtctcacacgataaaatatgggataaactccctaagatttaggggagctatgctgtggaataccttaaacgatgatgtaaagaatatagcgtctgttgcagctttcaaaaaggaaattaaaacttgggatggaaccagttgcctttgtacaatttgtaaatagacactgaattcctttgattgtaaattaacatgtattactttaggtttattgtaaatagttggtgtaaattagctttattcttttaaaactatgtaaataccaactttaaataaatatatgaaatgaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03528 all species →	Rabaptin	Rabaptin	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018514 all species →	Domain	Rabaptin coiled-coil domain	Interproscan
IPR003914 all species →	Family	Rabaptin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31179 all species →	RAB GTPASE-BINDING EFFECTOR PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold838.g5.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.