Gene detail

Detailed information of scaffold84.g16.t2 in Morbakka virulenta

Genomic Location: scaffold84:337585...378235
NR annotation: CAF4124917.1, unnamed protein product, partial [Rotaria magnacalcarata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold84.g16.t2

TTTAGACCAACAAAAACAAGCGATAGCAGCTCGTGACAGACGTCGTAGTTTAACTTGGCTGTTGTCTTCCAATTTTCCCGACTGAAACAATTCAAAAAGCACTAAAGGTTCATGCTTTTGTTGAGGTAAAAAGTGTTCTCTTTCTAAAGCATTGTGGAGTGGCATTTTTTGTGTGTACCCTTAGCATAGTCTCTTGGCACAAACTTTTGCAGGACGTATCTGTGGAAATTAAAATTACTGAGAAGAGTATGAAAACACTGGCTTATTGCTCTGCAAATGGGAGGGCACTTAAACATTTCAGTTCAAAGTTAAGGAACCAAGGACTGACAAGGCTTCTTGCAACAGCACATTGTTTGGAAGATGGAGAATATGATAAACCATTTGTAAAAACTGCTATTCCAGGACCAAATTCACTGGCCAGGCTGCGTGAATTTTGGGAGTACCAGAATGCTTCGTCAGTTCACTATTTCGTTGATTATGAGAAGAGCAAAGGGAATTACGTTGTGGATGCCGATGGAAATGTGCTTCTCGATGTTCATCAGCAGATAGCATCACTACCTTTGGGCTATAACCACTCGGCAATCCTAGACGTGATGAGGTCTCCTTATGCTCAGTCTTTGGCAGCAAATCGAGCGGCAATTGGAATGACGCCTCCAAAAAATCATGTAGATCATCTGAGAAATAGTTTATTGCGGGCCGCACCACCGGGAATGAAGCACGTCCAGACGATGATCTGTGGCTCGTGTTCACTGGAAAATGCATTTAAGGCAGCATTTATAAGATATAGGACTATGCAACGAGGGACGCCAATACCAGATCCTCATGAGTTACAAACTTGTGCTAGGAATCAAGCTCCTGGGTCACCTGATCTATGCATACTTTCCTTTAACGGGGGTTTTCATGGCAGGACAATGGGTACACTTTCCGCGTCACGAAGCAAAGCAATGCACAAAGTTGATATCCCTGCATTTCCTTGGCCAATGTGTGACTTTCCAAAGCTACGTTACCCTTTGGAAAATAATGCTGCAGCAAATCGTGAGGAGGAAAGTCGGTGCCTTGATCAGGTTTACCAGACTATTAAAGAATACAACGCAAAGGGGCACAACATAGCAGCAGTTGTAGTTGAGCCCATCCAGGCGGAGGGAGGTGATAACCACGCAAGCTCTGAATTCTTCGCTGGAATACAGGCTATTTGTAAAGAGTTTAGTACTGCTTTCATAGTTGATGAAGTTCAGACAGGCGTGTGCGCCACTGGAAAATTCTGGTGCCATGAACATTGGAACTTGCCAGAGCCACCAGATATTGTAACGTTTGCAAAGAAAATGCTCATTGGTGGGTTTTATTTTAAGGAAGAATTCATGCCGAAAATGCCAATGCTTATATTTAACACATGGCTTGGAGATCCACTTCGGATTCTTATGTTAGAGGGAGTTCTCGATACAATTACCAAAGATAATCTGCTGGAACGAACGCAACTCGCAGGCAAGGCTTTGCTAGATGGATTAAAGGAAATTCAGGAGAAATATCCTGGGCTGCTAACTCAAGCACGGGGCCGTGGAACATTTTGTGCCGTAACAGCACCCAATGAACAAACCAGAGATAAAATTATTGGGGCCTTGAGGAGAAATGGAGTACAAGTTGCTGGATGTGGATCGTCTTCGATGCGTTTTCGACCCGCACTTATATTTACGGACAACCATTCTAGGTTACTGCTTAATAGAATGGACACAGCGGTAGCCCAAGTCGGGGAATTAACAGAAAGGGAAAGACAAGCGTCTTAAGTCATAAAAGACATATTTTTGACATTAACAGTGGTTTGTTTTAGGACGCCCCGCTGTACCTAAAAGGTTTACTTTCTACTTTTAATTACTGAGACATATTTCTGTATACTTGTTTCACTTGTAATATTTTATTATCACGATTATAAAAGCTGTACATTTGAAAGTAGGCTGTAAGTCCTGTTTTATTTCTAGGAATAACACGGTGAGGCATAGGGGAATAAATGCATTGTGTACAGTGTTTATTGGTGATATCAATATCTTAATTTTTGCTTGAAAAACTACAACTGGTCGGAAACATGTAAAATTTTTGTATTGGATTTTTTTTGTTTTGCATGATTTCGAGATAAAATACTATGGCTTAG

Protein

Uniprot

Uniprot term	Description
P80147	4-aminobutyrate aminotransferase, mitochondrial OS=Sus scrofa OX=9823 GN=ABAT PE=1 SV=2
Q9BGI0	4-aminobutyrate aminotransferase, mitochondrial OS=Bos taurus OX=9913 GN=ABAT PE=2 SV=1
P80404	4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens OX=9606 GN=ABAT PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00202	Aminotran_3	Aminotransferase class-III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR005814	Family	Aminotransferase class-III	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43206	AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008483	Molecular Function	transaminase activity	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0003867	Molecular Function	obsolete 4-aminobutyrate transaminase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0009450	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan