Gene detail

Detailed information of scaffold84.g74.t1 in Morbakka virulenta

Genomic Location: scaffold84:1971999...1974379
NR annotation: XP_028518416.1, uncharacterized protein LOC110250494 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold84.g74.t1

atgaagaactactcttcaatgaagttggagctgttagcgctgaagtgggctgtagctgagaagttccgagagtacctgatgggatcaacatttgtggtctacacagatcacaacccccttcagacgaaaagcaagctgaaagcagttgagcagcgttgggcagcagagttggcgagcttcaacttcaagatagagaatcgcgctggcaagcacaacatcaatgctgatgctttaagccacattagaagagacgaatatggacatggtgatgtgagaggtgctggaacagatacagaagaagaggtcagcatccagtctgtggacgtccctgaagtgctagccaccgccacccaaaccaccaccatgccaacaaacatacagctaaagctactggaggctgctatacaccaggaggagctgggagtaacgagaagagctgacgacgcagaggtgcaggcaatgtcacttccatccctacagaaggagcagatctccacgttacagcagacagacgcagccatcgcaaggatcagacactatctatcagaggggaggaagccaagtcctggggaaaggcgacgagagtttctggaggcaaagaagctactgacccacctggacagcatagaagagaaggatggtgtgctctacaggatggtaaaagacaacaatggccaagttagtcaacttctagtggtaccaaaggcaatgcagagtcaagtcctgagagcagcgcatgatgactttgggcaccaagggccagagaggactgaacaggtgttgcggcagcggtgttggtggccagggattggtgcaaaagtgaagaggtggattgcaaaatgtgagaggtgcgttttggccaaaggaccctacttacccccaagaacaccaatgggcagtatccaagcaaccaagccactggaggtgctagcaatggagttcaccttgttagaaccagcctcagatgcacgggagaatgttttggtgttaactgacgtcttcaccaagtttaccatcgcgaagtccaaaaccacaccataccaccctcaaggaaatggccagtgcgagaggtttaacaggaccctgcatgaactactccgcaccctaccacatgagaaaaagagaagatggccagaacatctccaagagttgtgctatgcctacaacagcatcccacaagcaagcaccggttactctcctttctatctgatgttcggacgagatgcaaggataccattggacagactgattggaagggaagagacagagccagctgatagttatgtgacaagacaccaagaggagttacagaaggcctatcgacaaacagcaagaatgatagcagagcaggcagagaagcggaaaaagaaacatgacagcaacaacaggactagagatgcactgatagcagtaggcgagcgagtactcntgatgttcggacgagatgcaaggataccattggacagactgattggaagggaagagacagagccagctgatagttatgtgacaagacaccaagaggagttacagaaggcctatcgacaaacagcaagaatgatagcagagcaggcagagaagcggaaaaagaaacatgacagcaacaacaggactagagatgcactgatagtagtaggcgagcgagtactcataaggaattgtgcagtcagagggacaaacaagatccaagaccgatggagcaaccaagtccatagcgtggtgatgagaatggacaatggtgtatatgtcattgagccatcagatggacatggcaaagagaaagccgtcagcagggccgagatacagatctgtcctcctacagtactacagcaaagattgccagcgagacaagcgagacctgccagacgaaggagaactgtggctccacaatcagactcttcggacgacgacagcaaccaagaaatagcaattgatgttgcaccaccgctatccagtcagcagccagaaccaagtgatgaagcggatgaaggaagcagtagcacagacccagacgtcagtgacactgaggaggaagctcctgtcagacgttccacccgctctacagctggactgcatagcaacaggttccacttgcctatgtcagcactgcgtagataa

Transcript

scaffold84.g74.t1

gcaagatgggaagccgagggtgatcgctttttcaagccgtggcctgcatggtgccgagaaaaacatgaagaactactcttcaatgaagttggagctgttagcgctgaagtgggctgtagctgagaagttccgagagtacctgatgggatcaacatttgtggtctacacagatcacaacccccttcagacgaaaagcaagctgaaagcagttgagcagcgttgggcagcagagttggcgagcttcaacttcaagatagagaatcgcgctggcaagcacaacatcaatgctgatgctttaagccacattagaagagacgaatatggacatggtgatgtgagaggtgctggaacagatacagaagaagaggtcagcatccagtctgtggacgtccctgaagtgctagccaccgccacccaaaccaccaccatgccaacaaacatacagctaaagctactggaggctgctatacaccaggaggagctgggagtaacgagaagagctgacgacgcagaggtgcaggcaatgtcacttccatccctacagaaggagcagatctccacgttacagcagacagacgcagccatcgcaaggatcagacactatctatcagaggggaggaagccaagtcctggggaaaggcgacgagagtttctggaggcaaagaagctactgacccacctggacagcatagaagagaaggatggtgtgctctacaggatggtaaaagacaacaatggccaagttagtcaacttctagtggtaccaaaggcaatgcagagtcaagtcctgagagcagcgcatgatgactttgggcaccaagggccagagaggactgaacaggtgttgcggcagcggtgttggtggccagggattggtgcaaaagtgaagaggtggattgcaaaatgtgagaggtgcgttttggccaaaggaccctacttacccccaagaacaccaatgggcagtatccaagcaaccaagccactggaggtgctagcaatggagttcaccttgttagaaccagcctcagatgcacgggagaatgttttggtgttaactgacgtcttcaccaagtttaccatcgcgaagtccaaaaccacaccataccaccctcaaggaaatggccagtgcgagaggtttaacaggaccctgcatgaactactccgcaccctaccacatgagaaaaagagaagatggccagaacatctccaagagttgtgctatgcctacaacagcatcccacaagcaagcaccggttactctcctttctatctgatgttcggacgagatgcaaggataccattggacagactgattggaagggaagagacagagccagctgatagttatgtgacaagacaccaagaggagttacagaaggcctatcgacaaacagcaagaatgatagcagagcaggcagagaagcggaaaaagaaacatgacagcaacaacaggactagagatgcactgatagcagtaggcgagcgagtactcntgatgttcggacgagatgcaaggataccattggacagactgattggaagggaagagacagagccagctgatagttatgtgacaagacaccaagaggagttacagaaggcctatcgacaaacagcaagaatgatagcagagcaggcagagaagcggaaaaagaaacatgacagcaacaacaggactagagatgcactgatagtagtaggcgagcgagtactcataaggaattgtgcagtcagagggacaaacaagatccaagaccgatggagcaaccaagtccatagcgtggtgatgagaatggacaatggtgtatatgtcattgagccatcagatggacatggcaaagagaaagccgtcagcagggccgagatacagatctgtcctcctacagtactacagcaaagattgccagcgagacaagcgagacctgccagacgaaggagaactgtggctccacaatcagactcttcggacgacgacagcaaccaagaaatagcaattgatgttgcaccaccgctatccagtcagcagccagaaccaagtgatgaagcggatgaaggaagcagtagcacagacccagacgtcagtgacactgaggaggaagctcctgtcagacgttccacccgctctacagctggactgcatagcaacaggttccacttgcctatgtcagcactgcgtagataagttatttagtactatggacaggtcataaatatagttcccatga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan