Gene detail

Detailed information of scaffold85.g2.t1 in Aurelia aurita

Genomic Location: scaffold85:20726...32610
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold85.g2.t1

atgatagctggctccaataatttactgaagagactggcgtcaaggctgaccttggagacagcccttcagagctggatatattttcctccgtcttcagtgatgaagtttttcagctgatggtaactgaaacgaatcgctatgcccgacaaaacatcgaaaagaatcaaccaagaccaaattcttatgcaggcaagtggtttgaagtgacagtgccagaaatgaaggcctttgtcgccatgattttgctgatggggatagtgaagctgccgtcctaccgcctgtattggacaactcacgatcttttggagttcccagctatcaagaagattatggccagagacagattccttgcgattttgcagtttctccacttggcaaacaatgaagagaacttaccaagggatcatcctgaccataatcgtcttcataagattcagccatttatggacatgattgtgccactttggcaaggggcttattatcctggtcgagagcttgccgtcgacgaaaccctgattgccttcaagggaagaacccatttcaaacagtacaagcccaataaaccccataaatggggaataaatgcttggactttagccaagagtgacactggctatgtctacaactggagtatttatgaagggaaacagagggaggggggtgcagaagttgggatgacgcataaggttgtgactgatctcgctgagcctgtctatgaaaaggggcaccatatttacatggacaattatttcagcagcccagcattgtttgatgacctgaaaaatcatcaaacaggtgcatgtggtacttttcgtaccaatcgtaggggggttcctgatgaagcaaaaacagcaaagccaaagaaaggagagcccccagttgtcacaagagatggagaaattgtcttcatcaattggacagacaaacggcaagtgaacgtaatgaccaccctccacaatggggaaacattcgagaagaaagtcagctgtaggccaactcaaggagaggatgggaatccatggagattcgtttccaagcccaaggccattgagctttactcgaggtttatgggaggtgtggacagggctgatcagaaggcatcatataatgtcaacttacatcgctgcacaaagtggtggaagaaagctttctttcatatgttggaagtagcagtggtgaatgctggcattatgtaccagtccttctatcagcccagggtcttcaactcccgtaaatttcgactcaacttcattgagcagttgctggatggctatgagagggcaagctacaggccaggaagaagatcgcaagatgaccataaccccctgagactgtcaggaaggcattttacggggaaggtggagggttcttccaggcctgagtgtgtaggtaatctggagctaaaaaagtctggcgatgaatttgagctatctggtctggtagacattggagaattttcagacatattgacatcattcagtaaagagaacatgctgaagaagacatggaagaatctaagggatggcttctcaaaatgtttaaagaaaagggatttaatgacaatatctggagcaggtgcaaaagaactcccacagtgcaagtttttcaaagaaatgcaattcataagagatgtggtatcaaatagggctacacagagcaatttatcccttccacagttccaaccagatgaaagtggtgattttgaagacagtgtcacatgtgcaacatcacagtctgagtgcaacactagcacaccactgttgaaaaggaaacgaacaccagctattaaagaaaaacaagattgttctcaaaatggccaagcttcaaccagttcattggatcatgctattgctaattatttacagaatgaaaactcccgcaaaaatgatgcagatgacatgttttgccgaagtttggtgctcatattgtcatcactttcagccaaaaagaatcgcaaagctaaggttgagattcagaagctactgtatgacattgagttcagtgaagattaaatttgatatcaaccttcagtaagcataggaaaattgg

Transcript

scaffold85.g2.t1

ATGATAGCTGGCTCCAATAATTTACTGAAGAGACTGGCGTCAAGGCTGACCTTGGAGACAGCCCTTCAGAGCTGGATATATTTTCCTCCGTCTTCAGTGATGAAGTTTTTCAGCTGATGGTAACTGAAACGAATCGCTATGCCCGACAAAACATCGAAAAGAATCAACCAAGACCAAATTCTTATGCAGGCAAGTGGTTTGAAGTGACAGTGCCAGAAATGAAGGCCTttgtcgccatgattttgctgatggggatagtgaagctgccgtcctaccgcctgtattggacaactcacgatcttttggagttcccagctatcaagaagattatggccagagacagattccttgcgattttgcagtttctccacttggcaaacaatgaagagaacttaccaagggatcatcctgaccataatcgtcttcataagatTCAGCCATTTATGGACATGATTGTGCCACTTTGGCAAGGGGCTTATTATCCTGGTCGAGAGCTTGCCGTCGACGAAACCCTGATTGCCTTCAAGGGAAGAACCCATTTCAAACAGTACAAGCCCAATAAACCCCATAAATGGGGAATAAATGCTTGGACTTTAGCCAAGAGTGACACTGGCTATGTCTACAACTGGAGTATTTATGAAGGGAAACAGAGGGAGGGGGGTGCAGAAGTTGGGATGACGCATAAGGTTGTGACTGATCTCGCTGAGCCTGTCTATGAAAAGGGGCACCATATTTACATGGACAATTATTTCAGCAGCCCAGCATTGTTTGATGACCTGAAAAATCATCAAACAGGTGCATGTGGTACTTTTCGTACCAATCGTAGGGGGGTTCCTGATGAAGCAAAAACAGCAAAGCCAAAGAAAGGAGAGCCCCCagttgtcacaagagatggagaaattgtcttcatcaattggacagacaaacggcaagtgaacgtaatgaccaccctccacaatggggaaacattcgagaagaaAGTCAGCTGTAGGCCAACTCAAGGAGAGGATGGGAATCCATGGAGATTCGTTTCCAAGCCCAAGGCCATTGAGCTTTACTCGAGGTTTATGGGAGGTGTGGACAGGGCTGATCAGAAGGCATCATATAATGTCAACTTACATCGCTGCACAAAGTGGTGGAAGAAAGCTTTCTTTCATATGTTGGAAGTAGCAGTGGTGAATGCTGGCATTATGTACCAGTCCTTCTATCAGCCCAGGGTCTTCAACTCCCGTAAATTTCGACTCAACTTCATTGAGCAGTTGCTGGATGGCTATGAGAGGGCAAGCTACAGGCCAGGAAGAAGATCGCAAGATGACCATAACCCCCTGAGACTGTCAGGAAGGCATTTTACGGGGAAGGTGGAGGGTTCTTCCAGGCCTGAGTGTGTAGGTAATCTGGAGCTAAAAAAGTCTGGCGATGAATTTGAGCTATCTGGTCTGGTAGACATTGGAGAATTTTCAGACATATTGACATCATTCAGTAAAGAGAACATGCTGAAGAAGACATGGAAGAATCTAAGGGATGGCTTCTCAAAATGTTTAAAGAAAAGGGATTTAATGACAATATCTGGAGCAGGTGCAAAAGAACTCCCACAGTGCAAGTTTTTCAAAGAAATGCAATTCATAAGAGATGTGGTATCAAATAGGGCTACACAGAGCAATTTATCCCTTCCACAGTTCCAACCAGATGAAAGTGGTGATTTTGAAGACAGTGTCACATGTGCAACATCACAGTCTGAGTGCAACACTAGCACACCACTGTTGAAAAGGAAACGAACACCAGCTATTAAAGAAAAACAAGATTGTTCTCAAAATGGCCAAGCTTCAACCAGTTCATTGGATCATGCTATTGCTAATTATTTACAGAATGAAAACTCCCGCAAAAATGATGCAGATGACATGTTTTGCCGAAGTTTGGTGCTCATATTGTCATCACTTTCAGCCAAAAAGAATCGCAAAGCTAAGGTTGAGATTCAGAAGCTACTGTATGACATTGAGTTCAGTGAAGATTAAATTTGATATCAACCTTCAGTAAGCATAGGAAAAttgg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13843 all species →	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF10545 all species →	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan
PF02944 all species →	BESS	BESS motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029526 all species →	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR006578 all species →	Domain	MADF domain	Interproscan
IPR004210 all species →	Domain	BESS motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46599 all species →	PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold85.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.