Gene detail

Detailed information of scaffold86.g7.t2 in Aurelia aurita

Genomic Location: scaffold86:91686...96885
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold86.g7.t2

agtacaaagaccagcatgctttgcgcacagtcagcgacttgctctgcacagcttccagaataactgactgtacgaaattcacaaaaacaaaaacaaacgatggcaaaggctgctgccattgttgccagagtaacgtcgttgaaacgcatcctggaatatgaaccactgctgtacaactttagagtccaaccaatgagaatattccgccaagagaaaccagtcttcgttaaaggagtgtcttcaatcgttttcaccccaagatcagctgatttgtgccatgcaaaagtgaaacgcggtgagatgtatttgttaggtggccgtgtaaaagggagaagagtgttcctaacaagttgtggactggttcgaaaatggcattccttggaacacgttgtgcgaaagtcaatcagacaagggaagctgtcttgtaaatgcactgtgcaaggatgcgatggacaactttgtatgttacgtaaatctaggtttaagaggccagtctcgcattcatgtgaagggatttccaagaaaagaaaggcgtgctattccaagcatggtgtttgtattttcaagaacaatcgatgtaaatgggcaaaacgatcacaaaaattggtaaagagctgtgtttctaaagtcaagaagaactttcttcccgtagtaccatgattcgctgactcaaattcaaaattgccgccgaatatcgacctccggatcaaagttatatctaattggctggcttagcagggatcgctttcgattggctgcttcctgtaccaatcagaactgtttgcgcggagaatgtgaaagaatcaaggctgttggcgaattagcaatcgacaattttgcagtttaggaaagaagagtctagtggaaataagtgatcttgggacagactaaaagagagctcggggacgaacatacttttgttactgggttattatttgttttagttcggttcaggcagttggttaatttgtattgtagcaattttgttcacggtagatgcttccacggtaagatcctctaaaaatatggaagatatgtatcatcctgaagcatagccttcagaacatcgtaacaatgttgcggtggtggcgccgttcgtcaaaatattaagaagaaaatttcgacagagaagaaggggggctagttattgagttttcaatggtcaaagggcatgtgttcgacaaatatctgccgccgtatggccactgtggtgccgccactgcgatgtttagttcagtattgaattggctaaaggaaaaaagtaggcgttatatttttgaaatctttgaataatttgtaaatactgtagcaacggtagcttgcaagaatgtattcttttttctggcagatcacaaaggacaatagatagagcttgggcctttctttgagagacattttataagcagaaatgcatcagacgcatataaggttggtgcactgaccgaaaattaacagctccatgacaaaaggcgctttgaatccatggatgtcgctgtgtcgcggttgttgccctttggtttgagtttggaacaagtttatgttttgagtttatctacgcttctaatctgcaatttaagtaatgtcagtttcctaattcatagactcgtcgaattcctcaatgaaagttatagatttcccttaaaaatgaaacatgtgcatttcaagtaatcgccaaaattatacacccatcggactttgttatcaaaatgtttatgaagaagcatttgcatttaaaatgagcgttctcccatcagataaacacacgatattttttcgtttctccttcaaggatgaaagaaggaataatttgcatgcaattaatgtcagcttcccatcgtatatacacaccatatttcgttatcaaaatcatccaattctgtttccaagaagatctcagatatatttcgaactgaaaatctgatgcattcaatttttcaaaggtgaacagaattaaaggctcttggacaaccggcatgcattgcaggccaatttgtaaaggtggcctaatttcatgctgcatataaagctatcatcccaatgggggaacaagtgtagagcagattgttatgttatcgtagactaaaggtattttaacaattctgacacttatgttgtttattgaagatatcctgaggaaataaatgtaaaaattgtaa

Transcript

scaffold86.g7.t2

agtacaaagaccagcatgctttgcgcacagtcagcgacttgctctgcacagcttccagaataactgactgtacgaaattcacaaaaacaaaaacaaacgatggcaaaggctgctgCCATTGTTGCCAGAGTAACGTCGTTGAAACGCATCCTGGAATATGAACCACTGCTGTACAACTTTAGAGTCCAACCAATGAGAATATTCCGCCAAGAGAAACCAGTCTTCGTTAAAGGAGTGTCTTCAATCGTTTTCACCCCAAGATCAGCTGATTTGTGCCATGCAAAAGTGAAACGCGGTGAGATGTATTTGTTAGGTGGCCGTGTAAAAGGGAGAAGAGTGTTCCTAACAAGTTGTGGACTGGTTCGAAAATGGCATTCCTTGGAACACGTTGTGCGAAAGTCAATCAGACAAGGGAAGCTGTCTTGTAAATGCACTGTGCAAGGATGCGATGGACAACTTTGTATGTTACGTAAATCTAGGTTTAAGAGGCCAGTCTCGCATTCATGTGAAGGGATTTCCAAGAAAAGAAAGGCGTGCTATTCCAAGCATGGTGTTTGTATTTTCAAGAACAATCGATGTAAATGGGCAAAACGATCACAAAAATTGGTAAAGAGCTGTGTTTCTAAAGTCAAGAAGAACTTTCTTCCCGTAGTACCATGATTCGCTGACTCAAATTCAAAATTGCCGCCGAATATCGACCTCCGGATCAAAGTTATATCTAATTGGCTGGCTTAGCAGGGATCGCTTTCGATTGGCTGCTTCCTGTACCAATCAGAACTGTTTGCGCGGAGAATGTGAAAGAATCAAGGCTGTTGGCGAATTAGCAATCGACAATTTTGCAGTTTAGGAAAGAAGAGTCTAGTGGAAATAAGTGATCTTGGGACAGACTAAAAGAGAGCTCGGGGACGAACATACTTTTGTTACTGGGTTATTATTTGTTTTAGTTCGGTTCAGGCAGTTGGTTAATTTGTATTGTAGCAATTTTGTTCACGGTAGATGCTTCCACGGTAAGATCCTCTAAAAATATGGAAGATATGTATCATCCTGAAGCATAGCCTTCAGAACATCGTAACAATGTTGCGGTGGTGGCGCCGTTCGTCAAAATATTAAGAAGAAAATTTCGACAGAGAAGAAGGGGGGCTAGTTATTGAGTTTTCAATGGTCAAAGGGCATGTGTTCGACAAATATCTGCCGCCGTATGGCCACTGTGGTGCCGCCACTGCGATGTTTAGTTCAGTATTGAATTGGCTAAAGGAAAAAAGTAGGCGTTATATTTTTGAAATCTTTGAATAATTTGTAAATACTGTAGCAACGGTAGCTTGCAAGAATGTATTCTTTTTTCTGGCAGATCACAAAGGACAATAGATAGAGCTTGGGCCTTTCTTTGAGAGACATTTTATAAGCAGAAATGCATCAGACGCATATAAGGTTGGTGCACTGACCGAAAATTAACAGCTCCATGACAAAAGGCGCTTTGAATCCATGGATGTCGCTGTGTCGCGGTTGTTGCCCTTTGGTTTGAGTTTGGAACAAGTTTATGTTTTGAGTTTATCTACGCTTCTAATCTGCAATTTAAGTAATGTCAGTTTCCTAATTCATAGACTCGTCGAATTCCTCAATGAAAGTTATAGATTTCCCTTAAAAATGAAACATGTGCATTTCAAGTAATCGCCAAAATTATACACCCATCGGACTTTGTTATCAAAATGTTTATGAAGAAGCATTTGCATTTAAAATGAGCGTTCTCCCATCAGATAAACACACGATATTTTTTCGTTTCTCCTTCAAGGATGAAAGAAGGAATAATTTGCATGCAATTAATGTCAGCTTCCCATCGTATATACACACCATATTTCGTTATCAAAATCATCCAATTCTGTTTCCAAGAAGATCTCAGATATATTTCGAACTGAAAATCTGATGCATTCAATTTTTCAAAGGTGAACAGAAttaaaggctcttggacaaccggcatgcattgcaggccaatttgtaaaggtggcctaatttcatgctgcatataaaGCTATCATCCCAATGGGGGAACAAGTGTAGAGCAGATTGTTATGTTATCGTAGACTAAAGGTATTTTAACAATTCTGACACTTATGTTGTTTATTGAAGATATCCTGAGGAAATAAATGTAAAAATTGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00965 all species →	TIMP	Tissue inhibitor of metalloproteinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001820 all species →	Family	Protease inhibitor I35 (TIMP)	Interproscan
IPR001134 all species →	Domain	Netrin domain	Interproscan
IPR027465 all species →	Homologous_superfamily	Proteinase inhibitor I35b (TIMP), C-terminal	Interproscan
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11844 all species →	METALLOPROTEASE INHIBITOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008191 all species →	Molecular Function	metalloendopeptidase inhibitor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold86.g7.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.