Gene detail

Detailed information of scaffold879.g2.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold879:14618...36274
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold879.g2.t2

cataaaatagaacaagcgttcacacgagaaaacatttccccggctagccgagatctcgcttgagctctaccgggatcccgcctagccgaggaaatattttcccatatgaacacattttcccggctaggcggggaaacttcttttgtttatcgttaatcctttcgaattctttggcgtcagagacaaagcgctattgttttatttctccggcttgccggggaaacttctctcatatgaaagccctgttcaaacgatgcatcgtgctgtgaacaatattgatacagagcagtataaatgcacgctgaacaagatgcgaagtaatgtcacaagattgccaaagcagttatcggatgcgacgatcagtatggttagaagtggaataggagaaatcagaagaatgccaacggaaattgatgatgactgctctcgccaaagaaagttaacgataagtcctgttatttctcgcaaagatacacaacaattcacaattccgaagtcatacacaggaagtcccattttgggagttcactcaagcaaagtagcaaaataccgttcgctccctggaaatctgttaacacagaagtcgaaatctctcgagaactgttcatcattggtacggatagctacaattggttcagtgaaccttgagatttggtactcagtggaagatgaaatgttgttggtccgagtacatcgtattagtatcattgcaaaaccaagtccatcagttattaatgcatgggattgcacgcccgaattaagagtcagcatattgcaggaaaaacggaaattctgggacagtcggacatctaagggacgttggacgctaacaccccatcaagcaacttatatcccgatcaagaagagcgtagtgcaagatcaatgtttaaggttgacgtgttttgatggcgaaagaaagaatgatttgactgctattggtcatgttttcgtgcaattgaaagatcttgatttgtcatggaaatcatcatgctatgtcagagaaattgaagttaactctgtgccgggtggcttcagtacaggaagaattgacatgaaattcctgtggatatcatcatcagagaaattagaaatcaaaatcgggaaagcttgcagactgaaaagtcctcatggcactttacgaaggtatttttatgccaaattgttggttgttattggcggagaggaaattaaacattggaaatcacagcctcatcttgctacacccgatgttaaatttgatgaaactttccatattaatctaaattcctctcagctgaacgagtcgacttttgttgtccaagttttcgcgagaccaatggagaaatttcttttcaattctgaactgattggtacgaccatcattggaccttatatgccgaaagtgctggatggatgttttacgcaatgggagaaaattataattaaccctttcgaagatattagtgaaacgcaaaatttgtatttgtaatgtatattttggttgttttcaagcaaagaaattagatttgttgtttattggccgatcaaccgtatttttagactttgaagtcttttgattcagcgtagaaattgttattttcgaacatttctcaaagtaacaaagactgtgaaggtcattttgaagtagggcaagtctactccaagtcttatagtggttcactgatagctgatgtgctaataattagatcagttagagaggctggtacccagggtattagatcagatgaacaagagcaaattctgtaaacaaaagattcaggtctgttcaagacaaagcgatttcgaagcctaaagaatatatttcacaccttctgcgcagccagccataatgttttgcactctctgtttattttgatttgattgagtgcattcagaggtgtgaaatctattcttcagaagggcaaatcgctttatctttcagaaacctcgatcttttgtttcacaaaagttgcccttgctgatcagatgtggttcgtcaaatagaagtaacaccgggtgtcccagaaaaaacgcagcagaattgatcggagctagcaacaataatttaggtctaatcggcccctaatgaatgtcaagtaatccttgatagttaacttgaagataaacaccttattttgttttatattgatgcactgatagtgtgaatatcaatcttgaaagaccaaatctgcctgaacctccaaaccagagcttttgggttttggcctaaagtgcaaacgcgctattttggggatctcctgaattactgtgaaataagagaataaagccttgtgttgaggagaatatctgaatagaaatacaacgagattcataaattttgtcatgaagagacacctgtctttaaatgcttcaaaaaagtttcgaaaagttagaattgcatctgtctcataaaagagagcaatccacgaagtagtttgcatgggcgtgaaagattaattagttcttgcaatcgacatgactttcatgaatgcattttctataatctttcttggaatcatttcgaaacaagcaatcagttatacccaagggaaaattatcaatggataagatccataaaaattcttattcgtgcttggttttttgcaggtgcaatatgatattcctttactaatttccccttcggtattgttatgtttgtcaattttttgctttcaaatttcttttgacatgtttgccgaaacacgtgtgcctaagcttgctcgcacactacgctatgcttgtgactgaggagattccccaagcgtgcttccagttaggcaaaaactagaaacctctggttggagatggaagcgaaatggaactttcaagattgatattccacctctccatgcaccaatatcaacaaacaaggtaaacaaacaaggtattaatcttcaagttatctatcaaggattacataaaaaattattgtggataattggacctacatttttattgctagtcccgatcaaatctgttgcattttttttgggacacccggtagtagttgaaatgtaatttttatgtggttcgtcgtaatataacactagcattgtaaataataccttaagacgacacgattatttgtagagatgtttctgtatcttctgtaatcattcttatattttggttttgcggcttcgttgacgctgcactggagtaaaatgcgtttcgagtgtacgagaattttgaatgcgacggagaaggggtcgaagttagcaaggacaaattctttctaaagaatagatttcacacctctgaatgcattcaatcaaatcaaaataaacagagaacgcaaaa

Transcript

scaffold879.g2.t2

cataaaatagaacaagcgttcacacgagaaaacatttccccggctagccgagatctcgcttgagctctaccgggatcccgcctagccgaggaaatattttcccatatgaacacattttcccggctaggcggggaaacttcttttgtttatcgttaatcctttcgaattctttggcgtcagagacaaagcgctattgttttatttctccggcttgccggggaaacttctctcatatgaaagCCCTGTTCAAACGATGCATCGTGCTGTGAACAATATTGATACAGAGCAGTATAAATGCACGCTGAACAAGATGCGAAGTAATGTCACAAGATTGCCAAAGCAGTTATCGGATGCGACGATCAGTATGGTTAGAAGTGGAATAGGAGAAATCAGAAGAATGCCAACGGAAATTGATGATGACTGCTCTCGCCAAAGAAAGTTAACGATAAGTCCTGTTATTTCTCGCAAAGATACACAACAATTCACAATTCCGAAGTCATACACAGGAAGTCCCATTTTGGGAGTTCACTCAAGCAAAGTAGCAAAATACCGTTCGCTCCCTGGAAATCTGTTAACACAGAAGTCGAAATCTCTCGAGAACTGTTCATCATTGGTACGGATAGCTACAATTGGTTCAGTGAACCTTGAGATTTGGTACTCAGTGGAAGATGAAATGTTGTTGGTCCGAGTACATCGTATTAGTATCATTGCAAAACCAAGTCCATCAGTTATTAATGCATGGGATTGCACGCCCGAATTAAGAGTCAGCATATTGCAGGAAAAACGGAAATTCTGGGACAGTCGGACATCTAAGGGACGTTGGACGCTAACACCCCATCAAGCAACTTATATCCCGATCAAGAAGAGCGTAGTGCAAGATCAATGTTTAAGGTTGACGTGTTTTGATGGCGAAAGAAAGAATGATTTGACTGCTATTGGTCATGTTTTCGTGCAATTGAAAGATCTTGATTTGTCATGGAAATCATCATGCTATGTCAGAGAAATTGAAGTTAACTCTGTGCCGGGTGGCTTCAGTACAGGAAGAATTGACATGAAATTCCTGTGGATATCATCATCAGAGAAATTAGAAATCAAAATCGGGAAAGCTTGCAGACTGAAAAGTCCTCATGGCACTTTACGAAGGTATTTTTATGCCAAATTGTTGGTTGTTATTGGCGGAGAGGAAATTAAACATTGGAAATCACAGCCTCATCTTGCTACACCCGATGTTAAATTTGATGAAACTTTCCATATTAATCTAAATTCCTCTCAGCTGAACGAGTCGACTTTTGTTGTCCAAGTTTTCGCGAGACCAATGGAGAAATTTCTTTTCAATTCTGAACTGATTGGTACGACCATCATTGGACCTTATATGCCGAAAGTGCTGGATGGATGTTTTACGCAATGGGAGAAAATTATAATTAACCCTTTCGAAGATATTAGTGAAACGCAAAATTTGTATTTGTAATGTATATTTTGGTTGTTTTCAAGCAAAGAAATTAGATTTGTTGTTTATTGGCCGATCAACCGTATTTTTAGACTTTGAAGTCTTTTGATTCAGCGTAGAAATTGTTATTTTCGAACATTTCTCAAAGTAACAAAGACTGTGAAGGTCATTTTGAAGTAGGGCAAGTCTACTCCAAGTCTTATAGTGGTTCACTGATAGCTGATGTGCTAATAATTAGATCAGTTAGAGAGGCTGGTACCCAGGGTATTAGATCAGATGaacaagagcaaattctgtaaacaaaagattcaggtctgttcaagacaaagcgatttcgaagcctaaagaatatatttcacaccttctgcgcagccagccataatgttttgcactctctgtttattttgatttgattgagtgcattcagaggtgtgaaatctattcttcagaagggcaaatcgctttatctttcagaaacctcgatcttttgtttcacaaaagttgcccttgctGATCAGATGTGGTTCGTCAAATAGAAGTAACaccgggtgtcccagaaaaaacgcagcagaattgatcggagctagcaacaataatttaggtctaatcggcccctaatgaatgtcaagtaatccttgatagttaacttgaagataaacaccttattttgttttatattgatgcactgatagtgtgaatatcaatcttgaaagaccaaatctgcctgaacctccaaaccagagcttttgggttttggcctaaagtgcaaacgcgctattttggggatctcctgaattactgtgaaataagagaataaagccttgtgttgaggagaatatctgaatagaaatacaacgagattcataaattttgtcatgaagagacacctgtctttaaatgcttcaaaaaagtttcgaaaagttagaattgcatctgtctcataaaagagagcaatccacgaagtagtttgcatgggcgtgaaagattaattagttcttgcaatcgacatgactttcatgaatgcattttctataatctttcttggaatcatttcgaaacaagcaatcagttatacccaagggaaaattatcaatggataagatccataaaaattcttattcgtgcttggttttttgcaggtgcaatatgatattcctttactaatttccccttcggtattgttatgtttgtcaattttttgctttcaaatttcttttgacatgtttgccgaaacacgtgtgcctaagcttgctcgcacactacgctatgcttgtgactgaggagattccccaagcgtgcttccagttaggcaaaaactagaaacctctggttggagatggaagcgaaatggaactttcaagattgatattccacctctccatgcaccaatatcaacaaacaaggtaaacaaacaaggtattaatcttcaagttatctatcaaggattacataaaaaattattgtggataattggacctacatttttattgctagtcccgatcaaatctgttgcattttttttgggacacccggtaGTAGTTGAAATGTAATTTTTATGTGGTTCGTCGTAATATAACACTAGCATTGTAAATAATACCTTAAGACGACACGATTATTTGTAGAGATGTTTCTGTATCTTCTGTAATCATTCTTATATTTTGGTTTTGCGGCTTCGTTGACGCTGCACTGGAGTAAAATGCGTTTCGAGTGTACGAGAATTTTGAATGCGACGGAGAAGGGGTCGAAGTTAGCAAGGACAAATTctttctaaagaatagatttcacacctctgaatgcattcaatcaaatcaaaataaacagagaacgcaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10024 all species →	SYNAPTOTAGMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0001786 all species →	Molecular Function	phosphatidylserine binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0014059 all species →	Biological Process	regulation of dopamine secretion	Interproscan
GO:0017156 all species →	Biological Process	calcium-ion regulated exocytosis	Interproscan
GO:0017158 all species →	Biological Process	regulation of calcium ion-dependent exocytosis	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0070382 all species →	Cellular Component	exocytic vesicle	Interproscan
GO:0071277 all species →	Biological Process	cellular response to calcium ion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold879.g2.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.