Gene detail

Detailed information of scaffold88.g3.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold88:45537...83234
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold88.g3.t1

tatatgctcgtaggttatcgctattgataggctgatggacgctataactacgactcatggacttacgcttccagaaacggacatggcctaaatcacctgctattttttcttgaaaccacctaccctaaatcaccgcaaaaagtagttttcctgaagtgctacacagcaaaacaagctatcagtactaagttttctttctgtgtccttgttcctggtttggtttccagccaaagaatcatcctacgagctgaaaatgaaaatgattgcacagtttggtatcagaaaatcacccaatcaagctacgcattactacagacgaagaaagaagatttcgaacacaaatattcccacgtacttcaaatattggaaactgaacgaaatggtacttggcaattattgcaacaatgtcaggatcaagcacagcagcttaaagatctcagacaagaggtgatttatttgatatgcttctaccgatgttaagcatttatcaagaatatgttcgtaatcaccattacagcttacagactctagctgactgcaaacaaagagatgcgttcagaagggttttgaaaatgcatgaagaaagaccatcttgtgcaggacgcactttggaaagtttcctaactattccaatgtatcggattccaaactacatcattgccttgcatcagctagtctcactgactccatctgatcacgtggaaagaaaatcattggagcatgcgcaaagtgttcttgaagaattatcaacggtgatgcaggatgaagttagtgaaacggaaaacattcgacgaaatctttcgattgaacgtcagtttgctgaaggttgtgaagaattgcttgatgtggagcagatcttcattcgtcaaggccccttgttgcaagttggtggtatagagtgcactatgaacagaagaaaatcattttcaacattatcattgaaatcacatgatcgaaaggacagtgtgagacaatgctttctattctcaagatgtcttttgctcacgaacagaacatcaaatggaaagctgcaaattgcactgaatggaaagatcgagttaggaaatacaactttggttgaagatgtagtggatgaagatattgattttgtgagcctaccgaatgcatcagaaagtggaaacctcgttttcaaacttgtatttaatcatcctgacgaatcacaatcatttaaagtactcttcttggctgcttctgtggaggataaagcctcatgggcaagtgacattagccagtgcatagacaatctcaaaacacctgaggtggagcatactgtgtcaattgcttccaggcagagtcttttaagcatcagagctgatgctagactatttacaaatgatattgatataaggtacagcaaagccctggattcatcccgactgccacggattcaatatggcagtgtagagcgattgctggaaaggctaatggatgttcgtttcttgagtgtggaattcttaaacacatacctgacaacatacagggtcttctccgacgccattgccttattcgatacactgctacaatggtattacacaagatcacattttgaatatccaaaaccacaccaagatatttctgaagctacgacaccaactggtgaattttcgccaaaagctgccagccacagaaatagctgcccaagtgcggttaccagctcagtactccacgaaagcagaaaccgacgactacgtatccatcggcacagcgcaattccgttcacacgtgatttgaaatcacccacgtgtctatacccgccaatgattctagccaatcgtcgtcattcatctccttctgcgctttatgaagaagctgctttcacattcccaaccaaagctccctcatcgcctcagacaactcgcccgtctcgtggaccaacacgagactcaaccggccggacgcgaagtaagtcaggtccttctttgtgtggacgcgtcccggctaaagttatagattttaatgtgtccggtgggtatgaatcatatccggagacaccaaaaagcgttgattccgatccaaaatcacctaaagatgcctgtagcctgtacagttcaggagaatttactccaagcatgcaagcaaccagcaccagatcagcttttacaccagtccgggattttgatattgaaaaggttccggttctgaagctcgattcaccaccgaagatgaagaaacgggattccaagagacgcgagtcgaccgctgaagttgttgtcagttctgcgaataccggagaccatcggtcggattctactttaacagttgctgataacccatcaatagacagacaatatagacattcagataccgttattagtacggtaggcgtgactgtaaccccggctacaagtccgttgtcgaattcaccatcagaaggcttcaaaggtttttggcgggaattatcaaacgagagtgccagctcacgtgactctagtacttgtagttataagcatgatggtacaggaacccccacgagagagcgtcattcattcgagcaaagtattaccgtcaagagaaaaccagggggtcgatatgaaactgttttcgatgcggtattatctccaagtccaccaatggtatcccctcgaaattcgccaaggacatcaccattaacgccacctcgttcgcccggacgaagatcaccgcaaacgccaaaaagcccaatagtcaggttcatacccggtaaagacaagaatccgcgttgtggggacaggactgaccgaaagagtagtgatttcggaaggaccagtccgttagaagctctccggtcgccttcattcaaccgtagccctaattcatcgccgccttcccctgcacctggcgttgttgtcacctctcatcggtcgtcaaggcgacgatctagtatttcctccgcagctatagcatttgctgcagctactgcgggggcatctgtctcccccgcagcatcaccaacttcagctagtcgttttagatttgggttcaatttccagttttctgaatgtatggatgggcatattgtgacaatgagggtactcaagattttgaagcattggatttgtaaacaaattgaggactttaaaacaagtgatgagctgcgaaggaaagtcaatgattttttaaaagaagttttagaagatgatctatcaagccaggctgaatgcaaagctgcacgtgctttactcaggacattgcaatcagatgaaagcgacgaaagacgtcatacccaagcaatcatattacagccaccagtgagtgaaagaacaaagttaagctcaccgataacagacaagttttcaactctacatcttgcagaacagttgaccttcattcatcatacgttattatctaccataccagccagggagtttcttgacacagcgtggatgaaagatgacaaagaggttgttgcaccaaatattcttcgagttatcaataatttcaacatgacgagtcgcttgattgcctcagacatactttcaaaacagtcagcctctcttcggtcagcagctatagagaaatgggctgttgttgcggatgtttgccgatgtatgcataatttcaatggccttctcgctattatcactgcattcactggctcagcagtttatcgactgaagaaaacttgggaaaaggtttccaagcagacgagaattctgttggaaaaactgcaaagcatagtttctgctgagggacgctttaggaacatgagagaagcattaagaagatgctgtgcaatcaaccgcggcgcaggagcaggagaaagattcaggtgattcagatttagactagctacactagtccctcaatttcgctgttgttgttgttgctgatggccagctcaatgagggactagttgccagagagtgtctcaaatcggaattttcagaacgaaaaacgggcttgtaatctgattggagcattttggctaaaacaatggtaaattattttgtagccaatcaatttttcttctctttacttatttttactggaaaacctccctttgaagaagagacctgtttggtctgcgtttttcaggaagaaacaatggcgaccggc

Transcript

scaffold88.g3.t1

tatatgctcgtaggttatcgctattgataggctgatggacgctataactacgactcatggacttacgcttccagaaacggacatggcctaaatcacctgctattttttcttgaaaccacctaccctaaatcaccgcaaaaagtagttttcctgaagtgctacacagcaaaacaagctatcagtactaagTTTTCTTTCTGTGTCCTTGTTCCTGGTTTGGTTTCCAGCCAAAGAATCATCCTACGAGCTGAAAATGAAAATGATTGCACAGTTTGGTATCAGAAAATCACCCAATCAAGCTACGCATTACTACAGACGAAGAAAGAAGATTTCGAACACAAATATTCCCACGTACTTCAAATATTGGAAACTGAACGAAATGGTACTTGGCAATTATTGCAACAATGTCAGGATCAAGCACAGCAGCTTAAAGATCTCAGACAAGAGGTGATTTATTTGATATGCTTCTACCGATGTTAAGCATTTATCAAGAATATGTTCGTAATCACCATTACAGCTTACAGACTCTAGCTGACTGCAAACAAAGAGATGCGTTCAGAAGGGTTTTGAAAATGCATGAAGAAAGACCATCTTGTGCAGGACGCACTTTGGAAAGTTTCCTAACTATTCCAATGTATCGGATTCCAAACTACATCATTGCCTTGCATCAGCTAGTCTCACTGACTCCATCTGATCACGTGGAAAGAAAATCATTGGAGCATGCGCAAAGTGTTCTTGAAGAATTATCAACGGTGATGCAGGATGAAGTTAGTGAAACGGAAAACATTCGACGAAATCTTTCGATTGAACGTCAGTTTGCTGAAGGTTGTGAAGAATTGCTTGATGTGGAGCAGATCTTCATTCGTCAAGGCCCCTTGTTGCAAGTTGGTGGTATAGAGTGCACTATGAACAGAAGAAAATCATTTTCAACATTATCATTGAAATCACATGATCGAAAGGACAGTGTGAGACAATGCTTTCTATTCTCAAGATGTCTTTTGCTCACGAACAGAACATCAAATGGAAAGCTGCAAATTGCACTGAATGGAAAGATCGAGTTAGGAAATACAACTTTGGTTGAAGATGTAGTGGATGAAGATATTGATTTTGTGAGCCTACCGAATGCATCAGAAAGTGGAAACCTCGTTTTCAAACTTGTATTTAATCATCCTGACGAATCACAATCATTTAAAGTACTCTTCTTGGCTGCTTCTGTGGAGGATAAAGCCTCATGGGCAAGTGACATTAGCCAGTGCATAGACAATCTCAAAACACCTGAGGTGGAGCATACTGTGTCAATTGCTTCCAGGCAGAGTCTTTTAAGCATCAGAGCTGATGCTAGACTATTTACAAATGATATTGATATAAGGTACAGCAAAGCCCTGGATTCATCCCGACTGCCACGGATTCAATATGGCAGTGTAGAGCGATTGCTGGAAAGGCTAATGGATGTTCGTTTCTTGAGTGTGGAATTCTTAAACACATACCTGACAACATACAGGGTCTTCTCCGACGCCATTGCCTTATTCGATACACTGCTACAATGGTATTACACAAGATCACATTTTGAATATCCAAAACCACACCAAGATATTTCTGAAGCTACGACACCAACTGGTGAATTTTCGCCAAAAGCTGCCAGCCACAGAAATAGCTGCCCAAGTGCGGTTACCAGCTCAGTACTCCACGAAAGCAGAAACCGACGACTACGTATCCATCGGCACAGCGCAATTCCGTTCACACGTGATTTGAAATCACCCACGTGTCTATACCCGCCAATGATTCTAGCCAATCGTCGTCATTCATCTCCTTCTGCGCTTTATGAAGAAGCTGCTTTCACATTCCCAACCAAAGCTCCCTCATCGCCTCAGACAACTCGCCCGTCTCGTGGACCAACACGAGACTCAACCGGCCGGACGCGAAGTAAGTCAGGTCCTTCTTTGTGTGGACGCGTCCCGGCTAAAGTTATAGATTTTAATGTGTCCGGTGGGTATGAATCATATCCGGAGACACCAAAAAGCGTTGATTCCGATCCAAAATCACCTAAAGATGCCTGTAGCCTGTACAGTTCAGGAGAATTTACTCCAAGCATGCAAGCAACCAGCACCAGATCAGCTTTTACACCAGTCCGGGATTTTGATATTGAAAAGGTTCCGGTTCTGAAGCTCGATTCACCACCGAAGATGAAGAAACGGGATTCCAAGAGACGCGAGTCGACCGCTGAAGTTGTTGTCAGTTCTGCGAATACCGGAGACCATCGGTCGGATTCTACTTTAACAGTTGCTGATAACCCATCAATAGACAGACAATATAGACATTCAGATACCGTTATTAGTACGGTAGGCGTGACTGTAACCCCGGCTACAAGTCCGTTGTCGAATTCACCATCAGAAGGCTTCAAAGGTTTTTGGCGGGAATTATCAAACGAGAGTGCCAGCTCACGTGACTCTAGTACTTGTAGTTATAAGCATGATGGTACAGGAACCCCCACGAGAGAGCGTCATTCATTCGAGCAAAGTATTACCGTCAAGAGAAAACCAGGGGGTCGATATGAAACTGTTTTCGATGCGGTATTATCTCCAAGTCCACCAATGGTATCCCCTCGAAATTCGCCAAGGACATCACCATTAACGCCACCTCGTTCGCCCGGACGAAGATCACCGCAAACGCCAAAAAGCCCAATAGTCAGGTTCATACCCGGTAAAGACAAGAATCCGCGTTGTGGGGACAGGACTGACCGAAAGAGTAGTGATTTCGGAAGGACCAGTCCGTTAGAAGCTCTCCGGTCGCCTTCATTCAACCGTAGCCCTAATTCATCGCCGCCTTCCCCTGCACCTGGCGTTGTTGTCACCTCTCATCGGTCGTCAAGGCGACGATCTAGTATTTCCTCCGCAGCTATAGCATTTGCTGCAGCTACTGCGGGGGCATCTGTCTCCCCCGCAGCATCACCAACTTCAGCTAGTCGTTTTAGATTTGGGTTCAATTTCCAGTTTTCTGAATGTATGGATGGGCATATTGTGACAATGAGGGTACTCAAGATTTTGAAGCATTGGATTTGTAAACAAATTGAGGACTTTAAAACAAGTGATGAGCTGCGAAGGAAAGTCAATGATTTTTTAAAAGAAGTTTTAGAAGATGATCTATCAAGCCAGGCTGAATGCAAAGCTGCACGTGCTTTACTCAGGACATTGCAATCAGATGAAAGCGACGAAAGACGTCATACCCAAGCAATCATATTACAGCCACCAGTGAGTGAAAGAACAAAGTTAAGCTCACCGATAACAGACAAGTTTTCAACTCTACATCTTGCAGAACAGTTGACCTTCATTCATCATACGTTATTATCTACCATACCAGCCAGGGAGTTTCTTGACACAGCGTGGATGAAAGATGACAAAGAGGTTGTTGCACCAAATATTCTTCGAGTTATCAATAATTTCAACATGACGAGTCGCTTGATTGCCTCAGACATACTTTCAAAACAGTCAGCCTCTCTTCGGTCAGCAGCTATAGAGAAATGGGCTGTTGTTGCGGATGTTTGCCGATGTATGCATAATTTCAATGGCCTTCTCGCTATTATCACTGCATTCACTGGCTCAGCAGTTTATCGACTGAAGAAAACTTGGGAAAAGGTTTCCAAGCAGACGAGAATTCTGTTGGAAAAACTGCAAAGCATAGTTTCTGCTGAGGGACGCTTTAGGAACATGAGAGAAGCATTAAGAAGATGCTGTGCAATCAACCGCGGCGCAGGAGCAGGAGAAAGATTCAGGTGATTCAGATTtagactagctacactagtccctcaatttcgctgttgttgttgttgctgatggccagctcaatgagggactagttgccagagagtgtctcaaatcggaattttcagaacgaaaaacgggcttgtaatctgattggagcattttggctaaaacaatggtaaattattttgtagccaatcaatttttcttctctttacttatttttactggaaaacctccctttgaagaagagacctgtttggtctgcgtttttcaggaagaaacaatggcgaccggc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00618 all species →	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan
PF00617 all species →	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001895 all species →	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR036964 all species →	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR008937 all species →	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR023578 all species →	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR000651 all species →	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113 all species →	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold88.g3.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.