Gene detail

Detailed information of scaffold882.g8.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold882:56274...92304
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold882.g8.t3

tttaaattcatgccagaatttatgctcgaaatcaataaattcttgttctatgcatcattctcccaattaaatcgtctaaatgtgggcctgtaaccacaaaaaaatccgacaggtcgtgtgacatgtccgacaaagagcctcctgggggcactccgtcccccgtcccccccacttgcttcggccctgtctttaagtttatacgatttgatgagaaacatggaccagctcgttgtaatttaagtttgattttgaaaacagttagagtttaaacttttgtgatgacgtaaatgcttctcttcagtttacttgtttcatccgaaactttttcagtttgatagatttgttcgttctgagtcaaatcgtctcgaaacaagaaataaaatccctcaaaaactatgtaacaatgagaaatctcaagaaaagttgtcttataataggaatgatcatctcaaaacaagaaaatgtccacgttgcagatgaccttgatggttttggattctcaaatcaagatccttggatacagcatatgactattcgcgagaatatcttgtttgggcagccgttttatcacaaaaaatacaatgacgtcatccaatgctgtgccctggaagaggaccttgcagctcttcccgctggggatctgacagaagttggagaaaatggagtgactttaagtggtggccaaaaggcacgagttgccttagcacgagctgtataccagaagaaggacatttatctactggacgacccatttgctgctgtagatacccatgttgcgcagcacatattctcaaattgcatcatgggaattcttcgaaagaaaacaaggattctctgcactcatcacacaaaatacctccaagaagcagatcttattattgctcttgatgaaggaaacatcgtgatggctggaacacctcatgaaatattgaatgaaggagaagtagctcaatattcctttgatatggatgaagaggttgtcgatgacaccctgaagagccctgacaaggaaaagagcagcacagcgatgcctggtggtgtcaatgaagacgatggtaaactcgtcgaggaagaggaacaagcaaagggagtattggctttcagtgtctacaaatcttattggaaagcagttggacattttctctcggtctcaatcattgttttccttctcttcatgcaaggttcacgaaatattagcgactggtggcttgcttactggatatcacaggaaaagcaaaagaatcatgctacttcaaatgcaaccctcacgtcttttcatgttaattttgacggtgatgtgaaattttatttgacagtctatggctcaatagctggagccaatactattttgtcgcattaaacccaataacgcaacaaaaacaccgaaatcagtagaaagaagactattaactcctgtaaaagaaacgataaccaaaataaaccggtaacaagagaaaaaactgttaaatcctgtatggcattgttgaccctttaggctgatatcgtttttatgtactttggggtatctcagtacttgtctgaagaatgtctgaagatagccactaaaatctaaataattttgaagaattttgccctttggaacctaaatcaatcaattgagaactgacttggcaaacagcttcatgaacttcaggcaaactaactaaaaaaaacaaatggagttggatgtattatttcataaaaaacacaaacatttaattaaaacagtcatttactacttatatatttagatttttcatacaagttttactgttcactatacagtcaacgacatcatgagtagacaattaatttatgatttgcttattagctttacagcatttaaccatgcgtttttaatctgtttcatacacagacatttactgtgctttgtatgctattcccttcaattttcataaccctttaatcccccccccctttatattgcagacacacatttgttcaaaaatgacacgtgatcaccgtacattttgcggatacaaaatttcaatgtttcagaaatcacacacatcatcattttgcagtacattgactggaacaaagctttaaaactgtccacgaaaattgccatcatttttgttctgtgcatttttagcatcaaaactttcaacgatgcacaatctaaaatgttttaaatattttacaacctttcatcttgctcaaactctatcacgataaaacgtcatatatgatttttattttcctccagtgtcactgtatgtaacctgcaagtgatatcggagtataggaagggatgtaagcgttatccccacttctactgcgcttagcatattgatattgaccgaaatttctttaaaattttcatgaatgattcaaaaattcctaccaaaaatgaatttgacaaaaatattcaatttaataaatattcatgaatttaaatttgccatgcttagtactgctgccattaacttagtgtgttccttgtttcttctcttattaaggattaaagtagatcgaaaatcgaagggaatgctttttagctgtacactgtaccaggtgagtcaaaaaagagttatgtgtgctcgatcagcaataaaacaaaacctgtgattcgtttgcgttgaatttttgtatgaacctcaaagaatagatttgaaatagacaccattgtcgatgcttttgctcgattttgctatgcttgcaacacaggaagcccaaactgactcatcacaatcaggaccctacttactatcaagcaagaactgaagcaataagtcaacctctgtgaatgattcaactctcttctatagaacttcatgattcaagctggcagaatgaaattactgaaatagcattgattgtcgatcgtgtttatctgcagccacatttccggtgtaagatcgtagtatcggtgccactatgccattttaaatagctccaaaaggatgcgtagttctaaagttctatctactgttatagatatagcaggaagcccaaatatatatatatatatata

Transcript

scaffold882.g8.t3

tttaaattcatgccagaatttatgctcgaaatcaataaattcttgttctatgcatcattctcccaattaaatcgtctaaatgtgggcctgtaaccacaaaaaaatccgacaggtcgtgtgacatgtccgacaaagagcctcctgggggcactccgtcccccgtcccccccacttgcttcggccctgTCTTTAAGTTTATACGATTTGATGAGAAACATGGACCAGCTCGTTGTAATTTAAGTTTGATTTTGAAAACAGTTAGAGTTTAAACTTTTGTGATGACGTAAATGCTTCTCTTCAGTTTACTTGTTTCATCCGAAACTTTTTCAGTTTGATAGATTTGTTCGTTCTGAGTCAAATCGTCTCGAAACAAGAAATAAAATCCCTCAAAAACTATGTAACAATGAGAAATCTCAAGAAAAGTTGTCTTATAATAGGAATGATCATCTCAAAACAAGAAAATGTCCACGTTGCAGATGACCTTGATGGTTTTGGATTCTCAAATCAAGATCCTTGGATACAGCATATGACTATTCGCGAGAATATCTTGTTTGGGCAGCCGTTTTATCACAAAAAATACAATGACGTCATCCAATGCTGTGCCCTGGAAGAGGACCTTGCAGCTCTTCCCGCTGGGGATCTGACAGAAGTTGGAGAAAATGGAGTGACTTTAAGTGGTGGCCAAAAGGCACGAGTTGCCTTAGCACGAGCTGTATACCAGAAGAAGGACATTTATCTACTGGACGACCCATTTGCTGCTGTAGATACCCATGTTGCGCAGCACATATTCTCAAATTGCATCATGGGAATTCTTCGAAAGAAAACAAGGATTCTCTGCACTCATCACACAAAATACCTCCAAGAAGCAGATCTTATTATTGCTCTTGATGAAGGAAACATCGTGATGGCTGGAACACCTCATGAAATATTGAATGAAGGAGAAGTAGCTCAATATTCCTTTGATATGGATGAAGAGGTTGTCGATGACACCCTGAAGAGCCCTGACAAGGAAAAGAGCAGCACAGCGATGCCTGGTGGTGTCAATGAAGACGATGGTAAACTCGTCGAGGAAGAGGAACAAGCAAAGGGAGTATTGGCTTTCAGTGTCTACAAATCTTATTGGAAAGCAGTTGGACATTTTCTCTCGGTCTCAATCATTGTTTTCCTTCTCTTCATGCAAGGTTCACGAAATATTAGCGACTGGTGGCTTGCTTACTGGATATCACAGGAAAAGCAAAAGAATCATGCTACTTCAAATGCAACCCTCACGTCTTTTCATGTTAATTTTGACGGTGATGTGAAATTTTATTTGACAGTCTATGGCTCAATAGCTGGAGCCAATACTATTTTGtcgcattaaacccaataacgcaacaaaaacaccgaaatcagtagaaagaagactattaactcctgtaaaagaaacgataaccaaaataaaccggtaacaagagaaaaaactgttaaatcctgtaTGGCATTGTTGACCCTTTAGGCTGATATCGTTTTTATGTACTTTGGGGTATCTCAGTACTTGTCTGAAGAATGTCTGAAGATAGCCACTAAAATCTAAATAATTTTGAAGAATTTTGCCCTTTGGAACCTAAATCAATCAATTGAGAACTGACTTGGCAAACAGCTTCATGAACTTCAGGCAAACTAACTAAAAAAAACAAATGGAGTTGGATGTATTATTTCATAAAAAACACAAACATTTAATTAAAACAGTCATTTACTACTTATATATTTAGATTTTTCATACAAGTTTTACTGTTCACTATACAGTCAACGACATCATGAGTAGACAATTAATTTATGATTTGCTTATTAGCTTTACAGCATTTAACCATGCGTTTTTAATCTGTTTCATACACAGACATTTACTGTGCTTTGTATGCTATTCCCTTCAATTTTCATAACCCTTTAATCCCCCCCCCCTTTATATTGCAGACACACATTTGTTCAAAAATGACACGTGATCACCGTACATTTTGCGGATACAAAATTTCAATGTTTCAGAAATCACACACATCATCATTTTGCAGTACATTGACTGGAACAAAGCTTTAAAACTGTCCACGAAAATTGCCATCATTTTTGTTCTGTGCATTTTTAGCATCAAAACTTTCAACGATGCACAATCTAAAATGTTTTAAATATTTTACAACCTTTCATCTTGCTCAAACTCTATCACGATAAAACGTCATATATGATTTTTATTTTCCTCCAGTGTCACTGTATGTAACCTGCAAGTGATATCGGAGTATAGGAAGGGATGTAAGCGTTATCCCCACTTCTACTGCGCTTAGCATATTGATATTGACCGAAATTTCTTTAAAATTTTCATGAATGATTCAAAAATTCCTACCAAAAATGAATTTGACAAAAATATTCAATTTAATAAATATTCATGAATTTAAATTTGCCATGCTTAGTACTGCTGCCATTAACTTAGTGTGTTCCTTGTTTCTTCTCTTATTAAGGATTAAAGTAGATCGAAAATCGAAGGGAATGCTTTTTAGCTGTACACTGTACCAGGTGAGTCAAAAAAGAGTTATGTGTGCTCGATCAGCAATAAAACAAAACCTGTGATTCGTTTGCGTTGAATTTTTGTATGAACCTCAAAGAATAGATTTGAAATAGACACCATTGTCGATGCTTTTGCTCGATTTTGCTATGCTTGCAACACAGGAAGCCCAAACTGACTCATCACAATCAGGACCCTACTTACTATCAAGCAAGaactgaagcaataagtcaacctctgtgaatgattcaactctcttctatagaacttcatgattcaagctggcagaatgaaattactgaaatagcattgattgtcgatcgtgtttatcTGCAGCCACATTTCCGGTGTAAGATCGTAGTATCGGTGCCACTATGCCATTTTAAATAGCTCCAAAAGGATGCGTAGTTCTAAAGTTCTATCTACTGTTATAGATATAGCAGGAAGCCCAAatatatatatatatatata

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR050173 all species →	Family	ATP-binding cassette transporter C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223 all species →	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold882.g8.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.