Gene detail

Detailed information of scaffold898.g10.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold898:85550...119094
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold898.g10.t2

gtttgcaggataacagaatctggcaagctagcagttcaagaaagatattttgtaatcacaagatgctaatcaaggcttaattcgataacttgaaacatgaaatgatttacgtaataaaagaatcgtgccatctagcaatcaagacaaggtttccgtgttgcacaataacgtaatcaaggcttaactcgataattagaaacacgaagagatttgaacgagaagagatcaatacatgcaaacagttgatgatcgctttaattcgccaagctcgaaacacaactgtgatttatcgaatctgagattccatgagcttgcagataatttagttgtcttaacagtgttgagatcgattggtgaaggcttgctgacgataacttgaagacgcggtcctcgtttggttgacgagagagctgtgcaagttacgagtgattataattgttctcgaataagatgttgcaaagtttatccatgataatatacaagcaagagcatgctgtaaacttgcagcaaagtcagttgtttttcaaagggaagagtaattgtatgagtcatattctcagaggtcagtgcaggcttacagtgagcatttctgttttacattgatgacatcgattgctcaaagatcacatttaattatatataaacaggataataaatggcaaactggctgtagtatcaattgtttttcagtggcgagataaattgtttgagtcatattctcagaggtcagttcaagctcagagtgaatatagttgctttacactggtgaattcgattaagcaaagattgcatatgattacatataaacagtagcacatacagcaaactatctgtacatcggttgtttttcagaggcgggatatattatcaaaggcctctgctatttgctacaaagctgaaattactattgcgttcgcctgctgtcaagaacaagcttgtaaagccgtaattgttttgtcagacgtcaaatttgttggagttcctactggtaggagaaatcaaatcactctcgataacttcacagttgaactgattactttacttgatcgattgcaccgatttttagctcatcacgcacttagaaagtgtttttgtgacgcggcaccgtcatgattacagtaatgtggcataaaatatgaaattacgtgaaattgctggatattaaatgatgatttttgaatgttagtaatgagaagtacgctgttaagaaaatgacaatttggtgaatctcatggggtcggattttagtgtaaagattgtcagaagttgactatgggagttgtttgtggacgctttgctaaagtcagctcaagcggtccacaaaggtcatctgcattagattcacctattatgctgttgactggtcacgggggtccacaaaggtcatctgcattagattcacctattatgctgttgactggtcacgggggtgagatctttacagcgaaatttcatccatctggagacactctagcgtcggcagggtttgacagacttatatatctttggaatgtatatggagaatgcgagaattttgcagttttgaagggacacagtggagccattatggaactacattacttttcggatggaagcactttagtaacatgttctacagacaagacagttgcgtgctgggattacgaaactggaatgaggataaagcgactacgaggtcatacgtcatttgtaaatagctgttgtcctgcacgaagaggaccggagttgattgtcagtgggtcagatgatggaactgtcaagctctgggatcgaagaaaaaagggtgccttgcaaacatttcaaaatacatatcaggttacatctgtttgcttcaacgatacaagtgatcaagtattctctggtggaatagataatattgtcaaggtgtgggatctacgtaaaaacgatgttttatacaagatgcgaggacacactgatactgtgactggttttaggcttagtccggatggatcattcctcctttccaatgcaatggataacacagtgagaatatgggatattcgcccttatgcacctgcagaaagatgtgttaaagtattcactggtgtgcagcataatttcgaaaagtttaagttttatatattttaaattcacaacatacctgtatacaattgataatttactataccaacaaataactaaactttaatgaaataa

Transcript

scaffold898.g10.t2

GTTTGCAGGATAACAGAATCTGGCAAGCTAGCAGTTCAAGAAAGATATTTTGTAATCACAAGATGCTAATCAAGGCTTAATTCGATAACTTGAAACATGAAATGATTTACGTAATAAAAGAATCGTGCCATCTAGCAATCAAGACAAGGTTTCCGTGTTGCACAATAACGTAATCAAGGCTTAACTCGATAATTAGAAACACGAAGAGATTTGAACGAGAAGAGATCAATACATGCAAACAGTTGATGATCGCTTTAATTCGCCAAGCTCGAAACACAACTGTGATTTATCGAATCTGAGATTCCATGAGCTTGCAGATAATTTAGTTGTCTTAACAGTGTTGAGATCGATTGGTGAAGGCTTGCTGACGATAACTTGAAGACGCGGTCCTCGTTTGGTTGACGAGAGAGCTGTGCAAGTTACGAGTGATTATAATTGTTCTCGAATAAGATGTTGCAAAGTTTATCCATGATAATATACAAGCAAGAGCATGCTGTAAACTTGCAGCAAAGTCAGTTGTTTTTCAAAGGGAAGAGTAATTGTATGAGTCATATTCTCAGAGGTCAGTGCAGGCTTACAGTGAGCATTTCTGTTTTACATTGATGACATCGATTGCTCAAAGATCACATTTAATTATATATAAACAGGATAATAAATGGCAAACTGGCTGTAGTATCAATTGTTTTTCAGTGGCGAGATAAATTGTTTGAGTCATATTCTCAGAGGTCAGTTCAAGCTCAGAGTGAATATAGTTGCTTTACACTGGTGAATTCGATTAAGCAAAGATTGCATATGATTACATATAAACAGTAGCACATACAGCAAACTATCTGTACATCGGTTGTTTTTCAGAGGCGGGATATATTATCAAAGGCCTCTGCTATTTGCTACAAAGCTGAAATTACTATTGCGTTCGCCTGCTGTCAAGAACAAGCTTGTAAAGCCGTAATTGTTTTGTCAGACGTCAAATTTGTTGGAGTTCCTACTGGTAGGAGAAATCAAATCACTCTCGATAACTTCACAGTTGAACTGATTACTTTACTTGATCGATTGCACCGATTTTTAGCTCATCACGCACTTAGAAAGTGTTTTTGTGACGCGGCACCGTCATGATTACAGTAATGTGGCATAAAATATGAAATTACGTGAAATTGCTGGATATTAAATGATGATTTTTGAATGTTAGTAATGAGAAGTACGCTGTTAAGAAAATGACAATTTGGTGAATCTCATGGGGTCGGATTTTAGTGTAAAGATTGTCAGAAGTTGACTATGGGAGTTGTTTGTGGACGCTTTGCTAAAGTCAGCTCAAGCGGTCCACAAAGGTCATCTGCATTAGATTCACCTATTATGCTGTTGACTGGTCACGGGGGTCCACAAAGGTCATCTGCATTAGATTCACCTATTATGCTGTTGACTGGTCACGGGGGTGAGATCTTTACAGCGAAATTTCATCCATCTGGAGACACTCTAGCGTCGGCAGGGTTTGACAGACTTATATATCTTTGGAATGTATATGGAGAATGCGAGAATTTTGCAGTTTTGAAGGGACACAGTGGAGCCATTATGGAACTACATTACTTTTCGGATGGAAGCACTTTAGTAACATGTTCTACAGACAAGACAGTTGCGTGCTGGGATTACGAAACTGGAATGAGGATAAAGCGACTACGAGGTCATACGTCATTTGTAAATAGCTGTTGTCCTGCACGAAGAGGACCGGAGTTGATTGTCAGTGGGTCAGATGATGGAACTGTCAAGCTCTGGGATCGAAGAAAAAAGGGTGCCTTGCAAACATTTCAAAATACATATCAGGTTACATCTGTTTGCTTCAACGATACAAGTGATCAAGTATTCTCTGGTGGAATAGATAATATTGTCAAGGTGTGGGATCTACGTAAAAACGATGTTTTATACAAGATGCGAGGACACACTGATACTGTGACTGGTTTTAGGCTTAGTCCGGATGGATCATTCCTCCTTTCCAATGCAATGGATAACACAGTGAGAATATGGGATATTCGCCCTTATGCACCTGCAGAAAGATGTGTTAAAGTATTCACTGGTGTGCAGCATAATTTCGAAAAGTTTAAGTTTTATATATTTTAAATTCACAACATACCTGTATACAATTGATAATTTACTATACCAACAAATAACTAAACTTTAATGAAATAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR052234 all species →	Family	U5 snRNP Complex Component	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44006 all species →	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12857	SNRNP40, PRP8BP; Prp8 binding protein	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.