Gene detail

Detailed information of scaffold9.g28.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold9:451347...473723
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold9.g28.t3

gtcgatcgaattgaagattcgaaacttattgttctttgccaaatctcgcattctgattggcaactgttaactgaaatggaaagaatagctatatttgcaacagctgtcatttttctcatatttctaacaagcgtgtatggaaattcaaatccatgtacacaacatgtttcatgcgctacatgcataaatggtggtccaacctgtgtttggtgtgaagatgaagattttcagaaagtcaacaagaaaagaccaagatgtgatcttcgaacaacaatgggcacgatttgccccaacaaccaaacagatcctaaaagcattgcaactttgatcggtaacaaaccactcggccaaaaagtgcaagtatctcctcaaattgttgatctcaaacttcgtataggtgtgccagcaaaattcgaaatcaaagtcagacctgcgaagaattacccagtggatttgtattatcttatggatttatcaaattccatgagagatgacttggataaattaaaaaatcttggctcacaaattgcgacaacgattggctcaataacaaagaactatcgtctagcttttggctcttttgtggacaaaacagtgtcaccatacattcagattgaaagagagtatccgtgtacaggttgccgaaaaccatttggcttcatacataacagaaattttactccgaatgccaaggagttctctgaaggcgttagggctcaaaggatttctggtaataatgatagccctgaagggggttttgatgcactgatgcaagttgctgtttgtgaacagagaattggttggtcaaagaaggatacttctagaagaattgtcgtattcgttactgatgcctcatttcatagtgctggtgacggaaaacttggaggtattgttctcccaaatgatggaaaatgccatctggataaagctaacacttacacaatgacaaacaaaatggactacccatctgtcgggtttctcaaagcaaaactgaaagaaagcaagattgtcccaattattgctgtaacaaaagaagtgaaagaagattacgagtatcttgcccaagaatggaaagatcttggaacaacagcaggaacattatctgcggattcaagcaacgtagtagaattgatcaaggataactatgagaaaattgcttcaactgttcgtttgattggtaacaatccagctgatattaaagttgaatacaaagcaaagaaatgcagacgtaaaactgctgataacgagtgtagtgatgttgcaattgacgaagaagtgtcattcgaagtgtcagttacagctcagaggtgttcaaaagaggcacaggcattgaaaagctttacaatcagtattgctggttttgagaatgtacaggttaaaactaccgtcaaatgtaactgtgattgtgagacgtccccaactgttgattacaatagcacaagatgttcttctgcggggaaatttgcttgtggaaaatgttactgtgaccaaggaaggtatggtgatgactgcagatgtactggtacatcattaacggacgattctacttgtaaagcggacaatacatcgtctaccgtctgcagcaatgctggcacctgcatttgtggaacatgcgaatgtacccaaagaaagaatccagcagaaaagatcacaggagctcattgcgaatgcagaaattttggttgtgataatcacgatggaaaccaatgcggaggttccgagcgtggtgtttgtgaatgcaataaatgtaagtgcaaaggactttggaaggggagtaattgtggtcagaagaattgcacgcttgttcagaagaattgtaataaaaatggggctgtttgtggtgggcatggtaaatgtgactgtggagtttgtaactgtgaaattggctatcgaggagctcattgtgaaacctgcccatcatgtcctggccaatgctcaaataatcgtgactgcgtactttgccaagtattccagcaaggcccaacggaaacttgtaacaactgttcgctgaacattattcaaacgaatggaaccagtatgctgtttgtggtgggcatggtaaatgtgactgtggagtttgtaactgtgaaattggctatcgaggagctcattgtgaaacctgcccatcatgtcctggccaatgctcaaataatcgtgactgcgtactttgccaagtattccagcaaggcccaacggaaacttgtaacaactgttcgctgaacattattcaaacgaatggaaccatgaaagaacgtaaatgcgaagttcctgatagcaatggttgttatgttgtgttttcatatggagaagatgcgtctggcaatttcactgtttgggtaaatcctaagaaagtttgtccaaaagccataaccagtgagccagatatacttgcaattgttcttggcattattggaggtctcctactggcagccatcctcgcactcctgatttggaaacttctcgtttctgctcacgtaagttttattgggaataacgaggacacattttg

Transcript

scaffold9.g28.t3

gtcgatcgaattgaagattcgaaacttattgttctttgccaaatctcgcattctgattgGCAACTGTTAACTGAAATGGAAAGAATAGCTATATTTGCAACAGCTGTCATTTTTCTCATATTTCTAACAAGCGTGTATGGAAATTCAAATCCATGTACACAACATGTTTCATGCGCTACATGCATAAATGGTGGTCCAACCTGTGTTTGGTGTGAAGATGAAGATTTTCAGAAAGTCAACAAGAAAAGACCAAGATGTGATCTTCGAACAACAATGGGCACGATTTGCCCCAACAACCAAACAGATCCTAAAAGCATTGCAACTTTGATCGGTAACAAACCACTCGGCCAAAAAGTGCAAGTATCTCCTCAAATTGTTGATCTCAAACTTCGTATAGGTGTGCCAGCAAAATTCGAAATCAAAGTCAGACCTGCGAAGAATTACCCAGTGGATTTGTATTATCTTATGGATTTATCAAATTCCATGAGAGATGACTTGGATAAATTAAAAAATCTTGGCTCACAAATTGCGACAACGATTGGCTCAATAACAAAGAACTATCGTCTAGCTTTTGGCTCTTTTGTGGACAAAACAGTGTCACCATACATTCAGATTGAAAGAGAGTATCCGTGTACAGGTTGCCGAAAACCATTTGGCTTCATACATAACAGAAATTTTACTCCGAATGCCAAGGAGTTCTCTGAAGGCGTTAGGGCTCAAAGGATTTCTGGTAATAATGATAGCCCTGAAGGGGGTTTTGATGCACTGATGCAAGTTGCTGTTTGTGAACAGAGAATTGGTTGGTCAAAGAAGGATACTTCTAGAAGAATTGTCGTATTCGTTACTGATGCCTCATTTCATAGTGCTGGTGACGGAAAACTTGGAGGTATTGTTCTCCCAAATGATGGAAAATGCCATCTGGATAAAGCTAACACTTACACAATGACAAACAAAATGGACTACCCATCTGTCGGGTTTCTCAAAGCAAAACTGAAAGAAAGCAAGATTGTCCCAATTATTGCTGTAACAAAAGAAGTGAAAGAAGATTACGAGTATCTTGCCCAAGAATGGAAAGATCTTGGAACAACAGCAGGAACATTATCTGCGGATTCAAGCAACGTAGTAGAATTGATCAAGGATAACTATGAGAAAATTGCTTCAACTGTTCGTTTGATTGGTAACAATCCAGCTGATATTAAAGTTGAATACAAAGCAAAGAAATGCAGACGTAAAACTGCTGATAACGAGTGTAGTGATGTTGCAATTGACGAAGAAGTGTCATTCGAAGTGTCAGTTACAGCTCAGAGGTGTTCAAAAGAGGCACAGGCATTGAAAAGCTTTACAATCAGTATTGCTGGTTTTGAGAATGTACAGGTTAAAACTACCGTCAAATGTAACTGTGATTGTGAGACGTCCCCAACTGTTGATTACAATAGCACAAGATGTTCTTCTGCGGGGAAATTTGCTTGTGGAAAATGTTACTGTGACCAAGGAAGGTATGGTGATGACTGCAGATGTACTGGTACATCATTAACGGACGATTCTACTTGTAAAGCGGACAATACATCGTCTACCGTCTGCAGCAATGCTGGCACCTGCATTTGTGGAACATGCGAATGTACCCAAAGAAAGAATCCAGCAGAAAAGATCACAGGAGCTCATTGCGAATGCAGAAATTTTGGTTGTGATAATCACGATGGAAACCAATGCGGAGGTTCCGAGCGTGGTGTTTGTGAATGCAATAAATGTAAGTGCAAAGGACTTTGGAAGGGGAGTAATTGTGGTCAGAAGAATTGCACGCTTGTTCAGAAGAATTGTAATAAAAATGGGGCTGTTTGTGGTGGGCATGGTAAATGTGACTGTGGAGTTTGTAACTGTGAAATTGGCTATCGAGGAGCTCATTGTGAAACCTGCCCATCATGTCCTGGCCAATGCTCAAATAATCGTGACTGCGTACTTTGCCAAGTATTCCAGCAAGGCCCAACGGAAACTTGTAACAACTGTTCGCTGAACATTATTCAAACGAATGGAACCAGTATGCTGTTTGTGGTGGGCATGGTAAATGTGACTGTGGAGTTTGTAACTGTGAAATTGGCTATCGAGGAGCTCATTGTGAAACCTGCCCATCATGTCCTGGCCAATGCTCAAATAATCGTGACTGCGTACTTTGCCAAGTATTCCAGCAAGGCCCAACGGAAACTTGTAACAACTGTTCGCTGAACATTATTCAAACGAATGGAACCATGAAAGAACGTAAATGCGAAGTTCCTGATAGCAATGGTTGTTATGTTGTGTTTTCATATGGAGAAGATGCGTCTGGCAATTTCACTGTTTGGGTAAATCCTAAGAAAGTTTGTCCAAAAGCCATAACCAGTGAGCCAGATATACTTGCAATTGTTCTTGGCATTATTGGAGGTCTCCTACTGGCAGCCATCCTCGCACTCCTGATTTGGAAACTTCTCGTTTCTGCTCACGTAAGTTTTATTGGGAATAACGAGGACACATTTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00362 all species →	Integrin_beta	Integrin beta chain VWA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015812 all species →	Family	Integrin beta subunit	Interproscan
IPR002369 all species →	Domain	Integrin beta subunit, VWA domain	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR032695 all species →	Homologous_superfamily	Integrin domain superfamily	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10082 all species →	INTEGRIN BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005178 all species →	Molecular Function	integrin binding	Interproscan
GO:0005925 all species →	Cellular Component	focal adhesion	Interproscan
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0007229 all species →	Biological Process	integrin-mediated signaling pathway	Interproscan
GO:0008305 all species →	Cellular Component	integrin complex	Interproscan
GO:0009986 all species →	Cellular Component	cell surface	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0033627 all species →	Biological Process	cell adhesion mediated by integrin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05719	ITGB1, CD29; integrin beta 1	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.