Gene detail

Detailed information of scaffold9.g91.t2 in Aurelia aurita

Genomic Location: scaffold9:1225590...1247325
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold9.g91.t2

caagaaaggcggccatcttgaatacacaacaacttgctcattgaagttgaaacctgctgatctgcttcgctgaaagagagccgagaaagctgcaagatgtatataaagcaggttatcatccaaggcttcaggagctatagagatcaaacaatcattgaaccattcagtccgacacataatgttgttgttggaagaaatggttccggaaaaagcaacttctttcttgcaatccagtttgtgttgagtgatgaatttagccacatgggtcaagaagaaagacaacagcttcttcacgaaggaactggccccagagttgtgtctgcatatgtggaaatcatttttgacaacagtgataacagaatacctattgataaagaagaagtgtccttgagaagagttattggttctaaaaaggatcaatattttctggacaagaagaatgtcactaaaaccgatgtcatgaatctactggaaagtgctggcttttcaagaagcaatccttactatattgtcaaacaaggaaggattacacagcttgcagttgcaaaagatcatgaaagactgaaattgctaagagaggtagctggtactcgtgtttatgacgagaaaaaagaagaaagtaaaggaatcctaaaagaatcagagggtaaccgagacaagatatcagaaatgctggattacattgaaggcagacttgaaacattagaaacagagaaagaagagctgaaggaataccaaaagctggataaagacaggaggtgtctggaatacactatccatgataaagaattgaaagagacgaaagaaaagctggacgagcttgataagaatcgacaaggaaacacggacagaggtagagagttgcacgaatttgttcgccaagctactgagcaaatcgacgatctcaaccggcaaataaaggagctcaacgacaagaaaaatatgaaagaagctgataaacaacaagttgaagatgaaagaggagaattgatcaaaacaaaaacaaaattagagcttgatattcgggatttggaagaaggtgtatcagaagatgtcaacctacggaaaaagaatgcaagagaattgaaaaagttggaggagttgattcaaaagaaagaggatgaactggaagaaattaccccagaatataacgagaagaaaggaacggaggaggaatgccagagattgatgagatccaaagaacagagacgtgaagatttgtacgcgaagcaaggacgtggttcagaattcagatctaaagaagacagggatcagtggataaagaaggagctgagttctctttcaaagacaatcaaacagaagcaacaaaaggtgacacggataaaggacgaagtagcgaaggcacgaaatcgcttagaacagattgaacaagaaaatcgagaacgaggtgataatctcgacgaaagaaaatcgcagatggaagacgctaatgcacattacagaatcttgagaacaaaaagagacgaacacaataacaggagaaaggagctttggagagaggaaaatgcaatggaacagagcctgcagagtaccagagatgaactaggaagaaatgagaggaactatcgatcaacgatgagcaaggctgttgcgaatggaatagacagtgttaagaagatcatagaagagagaaatatccagggagtttatggaccactgattgagaatttcacatgtgaagataaatacttcacagctgtggaagtgactgctggaaataagctgttcaatatcattgttgataatgacaagactggagctcaagtgttatcaatcatgaataaacaaaagatgcctggtgaagtcacattcatgccactcaaccgtttgcatttcaaagatcttcaataccctaaatcacctgatgttcttccgatgatcaacaagatcaattacaacccaatgttcaagccagccatgcaacttgcttttggaaagacactgatctgtaggaatatggaaatagcatcacaattctcaaaaactgcagacttggactgtatcacgatggaagactttctagtagaaggattgctactttattttgccagaactgattcagagacaaaactgatctacatgttaagaatcatccttaagaagacttcctttattttacaggccatagaagatctgatggaagttttggagcagaggaaacacgaagccatcttgtttacgtttaagcaggtttcacatcatttttctgacatattcaagcaactggttccaagtggcaaagcaactttgataatgaaaactgatgcggcagactcgcaggaagatgagagtgaagcgtcatcacagcggtcatcatcttctcagaaatcgatgcgtcctattgatgagtttactggcatatctattaagatctcgttcactggcaaaagtgcagaaacacttgagatgaatcaactatctggtggtcaaaaaacattgcttgcactcacgttgattttcgcaattcagaaatgtgacccagctccattttatttattcgatgaaattgatcaagctcttgatccacaatacagaagtgctgttgcaaatatgatacacaaattggcaacgaaagcccagttcattacaaccacattcagaccagaattactggaatctgctgacaagttttatggtgtgcaattcaagaataaggtcagtcatattttatcaattaccaaggaacaagcgaaagattttgttgaagacgatacgacagagaagtagaattttctgctgtttttatcgaagatgttcagttanccgagatatgatacacaaattggcaacgaaagcccagttcattacaaccacattcagaccagaattactggaatctgctgacaagttttatggtgtgcaattcaagaataaggtcagtcatattttatcaattaccaaggaacaagcgaaggattttgttgaagacgatacgacagagaagtagaattttctgctgtttttatcgaagatgttcagttacaagtgcacatacttgaaacagatcgagggatgttgtaaggatgataaataccttcgttttatgagaacgaatgtggtgttcgtatgaggacaagcatgagaagctcacaaagaacgtggaattggcttaccaccaaagtatagacattatttgccccttattgaatcaatgttgaaatttccccttggagctgttggtcggttctatttgtttaacgttttcggtgtccaaagttatatgggcctatacgacagtatcgtatcgacacatgacacacacattggctgtttgtgtaaaaccgattgacctggtggttggacttgcatacggaatatgccctagattttcattgcatgctgttgtgaaattgctacttttaccaggatggatgcaaaacatacttcaaatggcctatatccgttgtaggcatggaccatatatcgaacacaagattaattttgttctctacgcgtgttttttgtttgcactgcatgaacttgtttaaactgcaagagcaaatttgagacatgggtacagcgcacctggcataaaatcaaggtattcagctgccaccttgtttctactaaacgtgcgttgtttcagacacttttttgttattgacacacatcagaagtgtcaaggatcgattgggtcatatggtccgtccaggggggttgaaatggttatatttgtcttgttgctgaccttgtttcattataacgttgtatagatttgacattgttcgtagtccgtgtatgtgcgttcaaactttgtaagatacattaaaataactcattttta

Transcript

scaffold9.g91.t2

CAAGAAAGGCGGCCATCTTGAATACACAACAACTTGCTCATTGAAGTTGAAACCTGCTGATCTGCTTCGCTGAAAGAGAGCCGAGAAAGCTGCAAGATGTATATAAAGCAGGTTATCATCCAAGGCTTCAGGAGCTATAGAGATCAAACAATCATTGAACCATTCAGTCCGACACATAATGTTGTTGTTGGAAGAAATGGTTCCGGAAAAAGCAACTTCTTTCTTGCAATCCAGTTTGTGTTGAGTGATGAATTTAGCCACATGGGTCAAGAAGAAAGACAACAGCTTCTTCACGAAGGAACTGGCCCCAGAGTTGTGTCTGCATATGTGGAAATCATTTTTGACAACAGTGATAACAGAATACCTATTGATAAAGAAGAAGTGTCCTTGAGAAGAGTTATTGGTTCTAAAAAGGATCAATATTTTCTGGACAAGAAGAATGTCACTAAAACCGATGTCATGAATCTACTGGAAAGTGCTGGCTTTTCAAGAAGCAATCCTTACTATATTGTCAAACAAGGAAGGATTACACAGCTTGCAGTTGCAAAAGATCATGAAAGACTGAAATTGCTAAGAGAGGTAGCTGGTACTCGTGTTTATGACGAGAAAAAAGAAGAAAGTAAAGGAATCCTAAAAGAATCAGAGGGTAACCGAGACAAGATATCAGAAATGCTGGATTACATTGAAGGCAGACTTGAAACATTAGAAACAGAGAAAGAAGAGCTGAAGGAATACCAAAAGCTGGATAAAGACAGGAGGTGTCTGGAATACACTATCCATGATAAAGAATTGAAAGAGACGAAAGAAAAGCTGGACGAGCTTGATAAGAATCGACAAGGAAACACGGACAGAGGTAGAGAGTTGCACGAATTTGTTCGCCAAGCTACTGAGCAAATCGACGATCTCAACCGGCAAATAAAGGAGCTCAACGACAAGAAAAATATGAAAGAAGCTGATAAACAACAAGTTGAAGATGAAAGAGGAGAATTGATCAAAACAAAAACAAAATTAGAGCTTGATATTCGGGATTTGGAAGAAGGTGTATCAGAAGATGTCAACCTACGGAAAAAGAATGCAAGAGAATTGAAAAAGTTGGAGGAGTTGATTCAAAAGAAAGAGGATGAACTGGAAGAAATTACCCCAGAATATAACGAGAAGAAAGGAACGGAGGAGGAATGCCAGAGATTGATGAGATCCAAAGAACAGAGACGTGAAGATTTGTACGCGAAGCAAGGACGTGGTTCAGAATTCAGATCTAAAGAAGACAGGGATCAGTGGATAAAGAAGGAGCTGAGTTCTCTTTCAAAGACAATCAAACAGAAGCAACAAAAGGTGACACGGATAAAGGACGAAGTAGCGAAGGCACGAAATCGCTTAGAACAGATTGAACAAGAAAATCGAGAACGAGGTGATAATCTCGACGAAAGAAAATCGCAGATGGAAGACGCTAATGCACATTACAGAATCTTGAGAACAAAAAGAGACGAACACAATAACAGGAGAAAGGAGCTTTGGAGAGAGGAAAATGCAATGGAACAGAGCCTGCAGAGTACCAGAGATGAACTAGGAAGAAATGAGAGGAACTATCGATCAACGATGAGCAAGGCTGTTGCGAATGGAATAGACAGTGTTAAGAAGATCATAGAAGAGAGAAATATCCAGGGAGTTTATGGACCACTGATTGAGAATTTCACATGTGAAGATAAATACTTCACAGCTGTGGAAGTGACTGCTGGAAATAAGCTGTTCAATATCATTGTTGATAATGACAAGACTGGAGCTCAAGTGTTATCAATCATGAATAAACAAAAGATGCCTGGTGAAGTCACATTCATGCCACTCAACCGTTTGCATTTCAAAGATCTTCAATACCCTAAATCACCTGATGTTCTTCCGATGATCAACAAGATCAATTACAACCCAATGTTCAAGCCAGCCATGCAACTTGCTTTTGGAAAGACACTGATCTGTAGGAATATGGAAATAGCATCACAATTCTCAAAAACTGCAGACTTGGACTGTATCACGATGGAAGACTTTCTAGTAGAAGGATTGCTACTTTATTTTGCCAGAACTGATTCAGAGACAAAACTGATCTACATGTTAAGAATCATCCTTAAGAAGACTTCCTTTATTTTACAGGCCATAGAAGATCTGATGGAAGTTTTGGAGCAGAGGAAACACGAAGCCATCTTGTTTACGTTTAAGCAGGTTTCACATCATTTTTCTGACATATTCAAGCAACTGGTTCCAAGTGGCAAAGCAACTTTGATAATGAAAACTGATGCGGCAGACTCGCAGGAAGATGAGAGTGAAGCGTCATCACAGCGGTCATCATCTTCTCAGAAATCGATGCGTCCTATTGATGAGTTTACTGGCATATCTATTAAGATCTCGTTCACTGGCAAAAGTGCAGAAACACTTGAGATGAATCAACTATCTGGTGGTCAAAAAACATTGCTTGCACTCACGTTGATTTTCGCAATTCAGAAATGTGACCCAGCTCCATTTTATTTATTCGATGAAATTGATCAAGCTCTTGATCCACAATACAGAAGTGCTGTTGCAAATATGATACACAAATTGGCAACGAAAGCCCAGTTCATTACAACCACATTCAGACCAGAATTACTGGAATCTGCTGACAAGTTTTATGGTGTGCAATTCAAGAATAAGGTCAGTCATATTTTATCAATTACCAAGGAACAAGCGAAAGATTTTGTTGAAGACGATACGACAGAGAAGTAGAATTTTCTGCTGTTTTTATCGAAGATGTTCAGTTANCCGAGATATGATACACAAATTGGCAACGAAAGCCCAGTTCATTACAACCACATTCAGACCAGAATTACTGGAATCTGCTGACAAGTTTTATGGTGTGCAATTCAAGAATAAGGTCAGTCATATTTTATCAATTACCAAGGAACAAGCGAAGGATTTTGTTGAAGACGATACGACAGAGAAGTAGAATTTTCTGCTGTTTTTATCGAAGATGTTCAGTTACAAGTGCACATACTTGAAACAGATCGAGGGATGTTGTAAGGATGATAAATACCTTCGTTTTATGAGAACGAATGTGGTGTTCGTATGAGGACAAGCATGAGAAGCTCACAAAGAACGTGGAATTGGCTTACCACCAAAGTATAGACATTATTTGCCCCTTATTGAATCAATGTTGAAATTTCCCCTTGGAGCTGTTGGTCGGTTCTATTTGTTTAACGTTTTCGGTGTCCAAAGTTATATGGGCCTATACGACAGTATCGTATCGACACATGACACACACATTGGCTGTTTGTGTAAAACCGATTGACCTGGTGGTTGGACTTGCATACGGAATATGCCCTAGATTTTCATTGCATGCTGTTGTGAAATTGCTACTTTTACCAGGATGGATGCAAAACATACTTCAAATGGCCTATATCCGTTGTAGGCATGGACCATATATCGAACACAAGATTAATTTTGTTCTCTACGCGTGTTTTTTGTTTGCACTGCATGAACTTGTTTAAACTGCAAGAGCAAATTTGAGACATGGGTACAGCGCACCTGGCATAAAATCAAGGTATTCAGCTGCCACCTTGTTTCTACTAAACGTGCGTTGTTTCAGACACTTTTTTGTTATTGACACACATCAGAAGTGTCAAGGATCGATTGGGTCATATGGTCCGTCCAGGGGGGTTGAAATGGTTATATTTGTCTTGTTGCTGACCTTGTTTCATTATAACGTTGTATAGATTTGACATTGTTCGTAGTCCGTGTATGTGCGTTCAAACTTTGTAAGATACATTAAAATAACTCATTTTTA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43977 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0007064 all species →	Biological Process	mitotic sister chromatid cohesion	Interproscan
GO:0034990 all species →	Cellular Component	mitotic cohesin complex	Interproscan
GO:0061775 all species →	Molecular Function	cohesin loader activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold9.g91.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.