Gene detail

Detailed information of scaffold928.g5.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold928:34241...77284
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold928.g5.t2

tcgcagaatagctaaaaagtctattaactgggtgacaacactgatttcatttggacatggcgtgataagctaaataggctccattgcatgttcaagagacaatgagtctacgttacatttgtgcgatgaaatcaaacaacaacaatggagctgttgattgtacagattgagttaattcagtttggagcgaagtcttacaatttcatttactcataacccaagaggagaagttgctataccgcacttgtgcccttatctccaacgatctccaataggaattgtccacttgtgttccacaaagccacatcattcaagtcggtcataggatgttcgcaatgagcatttatctgacccagtgatgcacaaacggacaggaattgtgtcagctcttcatcagcactacaaatatcaatcaatcatggccattatggacattagttgcagattgctgacaacttgccgatttttgtagctcttcactggtttgtgtgtccgttttactgcaagcttggaagattactcactaagagcctttcaaatcaattggattttgtattgacaagataaacaagatgctgtcagaatacagctatatcgtctttgtgatattgattgcctcacctatgcgccttgaatcgaagacaataccaaagcaaattattgatatgcttggaaatgtcgatgactttgagacatttatcgatctctttcatatgagggaacaaatgacaaactttacagcagaaaatcataaaatgcgaaacaatgatgcaagtaaaattgctcaattagaaaatgaagtctgcagaccaaggcctgttctcgtcaaagtaacccaaccaaaccatgcagcctcattcagatatccattttacgtcgagctgtatcgatgcatgggttcgtgtggtgcaaatccctttctttcaagatgtacagctgctgaaataacaccaatgcagctgagagttgcacaagttggctgggccatggaaagcaatatagtgagcaagcagaagaaaattgtcatgcttcctgttcataatgagacaaggtgtacttgtgaatgcatgaataggctggaagggtgcaataggtttcaggtatgggaagagaatagttgtcgttgtgaatgcactggctattgcccaagcaattacatttatactggtggtcacgaatgctgcacttgtccacgaaggaaaacttgtcccaggaaaaaggcgtggaaccccaacaaatgcgcgtgtgaatgcaggaaagatacgtgcaaaaaccaacagaagcaccgagatccaaaaacctgcaaatgtgtttgtaacaatgtgttatgcaggtatggtgaacttgacccaaagtcatgtcgttgtcaaaggcgaaacaatattgtataatgaaccttcaatgtcatatttctaaatcattcaataacaagtctataatgctacaaagcctacttggtgacaatggcttatgcagataggcccatatatggtgaactggatcctaggccatgtcgttgtcaaaggcgaaataatgttatataattaaccttcaatgtcatatttctgaatcattcaataacaagctgatgatgctacaaagcctacttggtgacaattgattatgcagatagacccgtatatggtgaactggatcctatgtcatgtcgttgtcaaaggcgaaataatattatataatcaaccttcagtgtcatatttctaaaccattcaataacaaattgcagaggctacaaaacgttagtgaaccacttaatgaccatgatttatgcagaaatggtgaactggacaaacgtcatggttatgtcaaaagcgaagattgcacaaccactcttcgattttatatttcaaaatgtcatacaataacaatccattgtcatacaataacaatccatccagtactcttgatgccatgaattttcaaaagttggaacttttttctggctcacccagtagttctaatgtttcttttataatatttatcttaaatatgttactttgactttatctgtgaaatggcatgtgaaagcatattgaaaaatctcattgggaacctaatttgtgatatgcagtattgtaactctgtcctaagagcagccaatgtttttcacttttcaacaacatttaaaacttgcatgttgttcatgaatgcacttcaattgtggcctaatctaaattaacgtaacataacgtgaatgcacttctctcttataactaggggcaaaatatagaagcttgatataggttaaaaaagacgttttcaatcatataaccggatgtcccaaaagaatncttatgcagataggcccatatatggtgaactggatcctaggccatgtcgttgtcaaaggcgaaataatgttatataattaaccttcaatgtcatatttctgaatcattcaataacaagctgatgatgctacaaagcctacttggtgacaattgattatgcagatagatccgtatatggtgaactggatcctatgtcatgtcgttgtcaaaggcgaaataatattatataatcaaccttcagtgtcatatttctaaaccattcaataacaaattgcagaggctacaaaacgttagtgaaccacttaatgaccatgatttatgcagaaatggtgaactggacaaacgtcatggttatgtcaaaagcgaagattgcacaaccactcttcgattttatatttcaaaatgtcatacaataacaatccatccagtactcttgatgccatgaattttcaaaagttggaacttttttctggctcacccagtagttctaatgtttcttttataatatttatcttaaatatgttactttgactttatctgtgaaatggcatgtgaaagcatattgaaaaatctcattgggaaccaaatttgtgatatgcagtattgtaactctgtcctaagagcagccaatgtttttcacttttcaacaacatttaaaacttgcatgttgttcatgaatgcacttcaattgtggcctaatctaaattaacgtaacataacgtgaatgcacttctctcttataactaggggcaaaatatagaagcttgatataggttaaaaaagacgttttcaatcatataaccggatgtcccaaaagaatgtatatagagagcagaaatatcaatcttgaaagctcaaatttccatccacgtgcaaaccagagctttggccttttggcctaagcaaattcctgaagtgcatccatatcgacattaagaactgagattgatgaaaaattaagtaactgcccagttggtgactaaagggtgacttctgaa

Transcript

scaffold928.g5.t2

TCGCAGAATAGCTAAAAAGTCTATTAACTGGGTGACAACACTGATTTCATTTGGACATGGCGTGATAAGCTAAATAGGCTCCATTGCATGTTCAAGAGACAATGAGTCTACGTTACATTTGTGCGATGAAATCAAACAACAACAATGGAGCTGTTGATTGTACAGATTGAGTTAATTCAGTTTGGAGCGAAGTCTTACAATTTCATTTACTCATAACCCAAGAGGAGAAGTTGCTATACCGCACTTGTGCCCTTATCTCCAACGATCTCCAATAGGAATTGTCCACTTGTGTTCCACAAAGCCACATCATTCAAGTCGGTCATAGGATGTTCGCAATGAGCATTTATCTGACCCAGTGATGCACAAACGGACAGGAATTGTGTCAGCTCTTCATCAGCACTACAAATATCAATCAATCATGGCCATTATGGACATTAGTTGCAGATTGCTGACAACTTGCCGATTTTTGTAGCTCTTCACTGGTTTGTGTGTCCGTTTTACTGCAAGCTTGGAAGATTACTCACTAAGAGCCTTTCAAATCAATTGGATTTTGTATTGACAAGATAAACAAGATGCTGTCAGAATACAGCTATATCGTCTTTGTGATATTGATTGCCTCACCTATGCGCCTTGAATCGAAGACAATACCAAAGCAAATTATTGATATGCTTGGAAATGTCGATGACTTTGAGACATTTATCGATCTCTTTCATATGAGGGAACAAATGACAAACTTTACAGCAGAAAATCATAAAATGCGAAACAATGATGCAAGTAAAATTGCTCAATTAGAAAATGAAGTCTGCAGACCAAGGCCTGTTCTCGTCAAAGTAACCCAACCAAACCATGCAGCCTCATTCAGATATCCATTTTACGTCGAGCTGTATCGATGCATGGGTTCGTGTGGTGCAAATCCCTTTCTTTCAAGATGTACAGCTGCTGAAATAACACCAATGCAGCTGAGAGTTGCACAAGTTGGCTGGGCCATGGAAAGCAATATAGTGAGCAAGCAGAAGAAAATTGTCATGCTTCCTGTTCATAATGAGACAAGGTGTACTTGTGAATGCATGAATAGGCTGGAAGGGTGCAATAGGTTTCAGGTATGGGAAGAGAATAGTTGTCGTTGTGAATGCACTGGCTATTGCCCAAGCAATTACATTTATACTGGTGGTCACGAATGCTGCACTTGTCCACGAAGGAAAACTTGTCCCAGGAAAAAGGCGTGGAACCCCAACAAATGCGCGTGTGAATGCAGGAAAGATACGTGCAAAAACCAACAGAAGCACCGAGATCCAAAAACCTGCAAATGTGTTTGTAACAATGTGTTATGCAGGTATGGTGAACTTGACCCAAAGTCATGTCGTTGTCAAAGGCGAAACAATATTGTATAATGAACCTTCAATGTCATATTTCTAAATCATTCAATAACAAGTCTATAATGCTACAAAGCCTACTTGGTGACAATGGCTTATGCAGATAGGCCCATATATGGTGAACTGGATCCTAGGCCATGTCGTTGTCAAAGGCGAAATAATGTTATATAATTAACCTTCAATGTCATATTTCTGAATCATTCAATAACAAGCTGATGATGCTACAAAGCCTACTTGGTGACAATTGATTATGCAGATAGACCCGTATATGGTGAACTGGATCCTATGTCATGTCGTTGTCAAAGGCGAAATAATATTATATAATCAACCTTCAGTGTCATATTTCTAAACCATTCAATAACAAATTGCAGAGGCTACAAAACGTTAGTGAACCACTTAATGACCATGATTTATGCAGAAATGGTGAACTGGACAAACGTCATGGTTATGTCAAAAGCGAAGATTGCACAACCACTCTTCGATTTTATATTTCAAAATGTCATACAATAACAATCCATTGTCATACAATAACAATCCATCCAGTACTCTTGATGCCATGAATTTTCAAAAGTTGGAACTTTTTTCTGGCTCACCCAGTAGTTCTAATGTTTCTTTTATAATATTTATCTTAAATATGTTACTTTGACTTTATCTGTGAAATGGCATGTGAAAGCATATTGAAAAATCTCATTGGGAACCTAATTTGTGATATGCAGTATTGTAACTCTGTCCTAAGAGCAGCCAATGTTTTTCACTTTTCAACAACATTTAAAACTTGCATGTTGTTCATGAATGCACTTCAATTGTGGCCTAATCTAAATTAACGTAACATAACGTGAATGCACTTCTCTCTTATAACTAGGGGCAAAATATAGAAGCTTGATATAGGTTAAAAAAGACGTTTTCAATCATATAACCGGATGTCCCAAAAGAATNCTTATGCAGATAGGCCCATATATGGTGAACTGGATCCTAGGCCATGTCGTTGTCAAAGGCGAAATAATGTTATATAATTAACCTTCAATGTCATATTTCTGAATCATTCAATAACAAGCTGATGATGCTACAAAGCCTACTTGGTGACAATTGATTATGCAGATAGATCCGTATATGGTGAACTGGATCCTATGTCATGTCGTTGTCAAAGGCGAAATAATATTATATAATCAACCTTCAGTGTCATATTTCTAAACCATTCAATAACAAATTGCAGAGGCTACAAAACGTTAGTGAACCACTTAATGACCATGATTTATGCAGAAATGGTGAACTGGACAAACGTCATGGTTATGTCAAAAGCGAAGATTGCACAACCACTCTTCGATTTTATATTTCAAAATGTCATACAATAACAATCCATCCAGTACTCTTGATGCCATGAATTTTCAAAAGTTGGAACTTTTTTCTGGCTCACCCAGTAGTTCTAATGTTTCTTTTATAATATTTATCTTAAATATGTTACTTTGACTTTATCTGTGAAATGGCATGTGAAAGCATATTGAAAAATCTCATTGGGAACCAAATTTGTGATATGCAGTATTGTAACTCTGTCCTAAGAGCAGCCAATGTTTTTCACTTTTCAACAACATTTAAAACTTGCATGTTGTTCATGAATGCACTTCAATTGTGGCCTAATCTAAATTAACGTAACATAACGTGAATGCACTTCTCTCTTATAACTAGGGGCAAAATATAGAAGCTTGATATAGGTTAAAAAAGACGTTTTCAATCATATAACCGGATGTCCCAAAAGAATGTATATAgagagcagaaatatcaatcttgaaagctcaaatttccatccacgtgcaaaccagagctttggccttttggcctaagcaaattcctgaagtgcatccatatcgacattaagaactgagattgatgaaaaattaagtaactgcccagttggtgactaaagggtgacttctgaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03128 all species →	CXCXC	CXCXC repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029034 all species →	Homologous_superfamily	Cystine-knot cytokine	Interproscan
IPR004153 all species →	Repeat	CXCXC repeat	Interproscan
IPR000072 all species →	Domain	PDGF/VEGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11633 all species →	PLATELET-DERIVED GROWTH FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0008284 all species →	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0031954 all species →	Biological Process	positive regulation of protein autophosphorylation	Interproscan
GO:0070851 all species →	Molecular Function	growth factor receptor binding	Interproscan
GO:0008083 all species →	Molecular Function	growth factor activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05449	VEGFC_D; vascular endothelial growth factor C/D	-	Cytokines and neuropeptides	ko04052	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.