Gene detail

Detailed information of scaffold95.g30.t2 in Aurelia aurita

Genomic Location: scaffold95:443696...455403
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold95.g30.t2

gagttttttacagataattaaaggcagaagagccagcaaaatggcccagtcacaagctcaatccagtgaatgtgctgcagcagttgaaatcccatcaaagttgtctgcaccaattgctgaaaactggtgttacacaaatgtgaaagttgttaaattctcatacatctggacaatcaacaacttcagcttttgcaaggaagagatgggagagaccctcaaaagctcaactttttctgctggtgtcaacgacaaaatgaaatggtgcttaaggatgaatcccaagggactagacgaagagagcaaggattacttgtcactttatctgttgttgttatcatgtaacaaaagcgaagtcagagcaaagttcaaattctcaattttgaatgcaaaaagagaagagactaaggcaatggagagccaacgagcgtatagatttgttcaaggaaaagactggggattcaagaaattcattcgtagagattttttattagaagaatcaaatggattgctccctgaagatcgattaacgatattttgtgaggtgagtgtggttgctgattctgtaaatatatctggacaatcaggaatgggtaatttcaaagtacctgaggacaatttaagtattgatttaggaaaactattcgaagaaggacatttcagtgacattaatttggtagttggtgatactcgattccctgtacataaagcaatattagcgtcgaggtctccagtttttgcaggaatgtttagacatattgaaatggaagagagtaaacaaggtattgtacaaataaaggatttagaaccagacgtcttaaaagaaatgttgaaatttatctacactggaaaaacgtcgcaactggacagtatggcagacgaattactatcagcagcagataagtatgcactggataggctgaaaatgatgtgtgaagaaacgttagcttacaatctatcagtggacactgtttgtaatgtgctgatattggctgatttacacaatgcacaaaatctcaagtctatagcaatcgattttacaaatagtcatgcaacagaagtcatggacaccgatgattggaaacgattagtcgtaagtcattcgaacattgtagctgatgcttttcgtgctttagctagtttaaaagcatctccacctatctggggacctcctaaaaagaagcaaaagccaggataagtaattttagtgatcagatcgaattatatgatgtaaatatcgtagacaagaatgttttggagataaaagaaggacatctttgtcaccaataaccatcttaggtcgtaaggcatgtgtgcttctagtcaccattaagtaacgcaaggaatatagtgacctacatcgccagtaaggcagttaccaaccctaagaatagatacaagtccacgttattgggattccaaagcgagtgtttgatagggttgcaagttttagttggccgaagtaaagagtgatttaaggtctactgcaacggctgtttctttcagatgttggagttaaaaattctcttcgagacaggctgcttgccatttatttttacccttagttttcaaagcgatatttacttgacctaacaacgttcctatgggtcgcttttaagactgtttatagttttgacgtggttaagtgaagcgtttggccataaacctgtacagtatatcgtatcaagaatttttgggtttgaaagagtgcttaatagcacagcacattatgttaacaaaactgtttgggaccatcgaagtaggctaggactttgaattcacacctgtgcgtttgacggacgccaaaaatgagaaactttctaacatatgccgaacggaatggcatatactgaatggaacctcttggcaaatgggaatgacaaacggacacctaatggaattaacggagatgtagtgatctagtctgaaaatagaacaaaggaaggccacgtgccacttattgtcctattacttgatcatcattggaaaacataaaatacaataggctattgttaactttggcctgggccaggctttaactacatctattccctttaagacgatcataaacagattttggtttaatgttctttctcgcaatagatgattacggaaaagttggcgtcggggggcatttgaccaagatgcattgcgttctataatagaatcaacagtgattctatagaaattcgatcaccaaatgcaattcatcttggtcaaatgccccccgacgccatcttttccgtaatcgtctattttcatagtttggataaagcccttcacacgcaacgaatattatttttacgaattctacaagcaaagcattacagcctcccttttgtaaataagctcccaaagcagtgctgtaggagaaatgcatctctttgttacataaaagctagcgggctgcatacggaacgccgtttgcccaaaaatagtttatgtgcacaaaacctagtttatgtgcacaaaacctagtttatgtgcacaaaacctagtttatgtgcacaaaacctagtttatgtgcacaaaacctagtttatgtgcacaaaaaatgacataaactatgtttatgtacgcataaacctaacttatgtaacataaacctagtttatgtcatttttgtgaaaacggctttccatggctgcattttttgtggcaaaattggctatgagatcatatgaccaactttaacctattttgaccaactttgaaaaggccaggctccaacgctatggagaggatttacacatatgttagaaatcttcaaagtaaagtaaatacgaagaatctacttggtaatcgtcgtgtgtcgtgaatacgtaaacatgaattaaagaatagatttttaa

Transcript

scaffold95.g30.t2

GAGTTTTTTACAGATAATTAAAGGCAGAAGAGCCAGCAAAATGGCCCAGTCACAAGCTCAATCCAGTGAATGTGCTGCAGCAGTTGAAATCCCATCAAAGTTGTCTGCACCAATTGCTGAAAACTGGTGTTACACAAATGTGAAAGTTGTTAAATTCTCATACATCTGGACAATCAACAACTTCAGCTTTTGCAAGGAAGAGATGGGAGAGACCCTCAAAAGCTCAACTTTTTCTGCTGGTGTCAACGACAAAATGAAATGGTGCTTAAGGATGAATCCCAAGGGACTAGACGAAGAGAGCAAGGATTACTTGTCACTTTATCTGTTGTTGTTATCATGTAACAAAAGCGAAGTCAGAGCAAAGTTCAAATTCTCAATTTTGAATGCAAAAAGAGAAGAGACTAAGGCAATGGAGAGCCAACGAGCGTATAGATTTGTTCAAGGAAAAGACTGGGGATTCAAGAAATTCATTCGTAGAGATTTTTTATTAGAAGAATCAAATGGATTGCTCCCTGAAGATCGATTAACGATATTTTGTGAGGTGAGTGTGGTTGCTGATTCTGTAAATATATCTGGACAATCAGGAATGGGTAATTTCAAAGTACCTGAGGACAATTTAAGTATTGATTTAGGAAAACTATTCGAAGAAGGACATTTCAGTGACATTAATTTGGTAGTTGGTGATACTCGATTCCCTGTACATAAAGCAATATTAGCGTCGAGGTCTCCAGTTTTTGCAGGAATGTTTAGACATATTGAAATGGAAGAGAGTAAACAAGGTATTGTACAAATAAAGGATTTAGAACCAGACGTCTTAAAAGAAATGTTGAAATTTATCTACACTGGAAAAACGTCGCAACTGGACAGTATGGCAGACGAATTACTATCAGCAGCAGATAAGTATGCACTGGATAGGCTGAAAATGATGTGTGAAGAAACGTTAGCTTACAATCTATCAGTGGACACTGTTTGTAATGTGCTGATATTGGCTGATTTACACAATGCACAAAATCTCAAGTCTATAGCAATCGATTTTACAAATAGTCATGCAACAGAAGTCATGGACACCGATGATTGGAAACGATTAGTCGTAAGTCATTCGAACATTGTAGCTGATGCTTTTCGTGCTTTAGCTAGTTTAAAAGCATCTCCACCTATCTGGGGACCTCCTAAAAAGAAGCAAAAGCCAGGATAAGTAATTTTAGTGATCAGATCGAATTATATGATGTAAATATCGTAGACAAGAATGTTTTGGAGATAAAAGAAGGACATCTTTGTCACCAATAACCATCTTAGGTCGTAAGGCATGTGTGCTTCTAGTCACCATTAAGTAACGCAAGGAATATAGTGACCTACATCGCCAGTAAGGCAGTTACCAACCCTAAGAATAGATACAAGTCCACGTTATTGGGATTCCAAAGCGAGTGTTTGATAGGGTTGCAAGTTTTAGTTGGCCGAAGTAAAGAGTGATTTAAGGTCTACTGCAACGGCTGTTTCTTTCAGATGTTGGAGTTAAAAATTCTCTTCGAGACAGGCTGCTTGCCATTTATTTTTACCCTTAGTTTTCAAAGCGATATTTACTTGACCTAACAACGTTCCTATGGGTCGCTTTTAAGACTGTTTATAGTTTTGACGTGGTTAAGTGAAGCGTTTGGCCATAAACCTGTACAGTATATCGTATCAAGAATTTTTGGGTTTGAAAGAGTGCTTAATAGCACAGCACATTATGTTAACAAAACTGTTTGGGACCATCGAAGTAGGCTAGGACTTTGAATTCACACCTGTGCGTTTGACGGACGCCAAAAATGAGAAACTTTCTAACATATGCCGAACGGAATGGCATATACTGAATGGAACCTCTTGGCAAATGGGAATGACAAACGGACACCTAATGGaattaacggagatgtagtgatctagtctgaaaatagaacaaaggaaggccacgtgccacttattgtcctattacttgatcatcattggaaaacaTAAAATACAATAGGCTATTGTTAACTTTGGCCTGGGCCAGGCTTTAACTACATCTATTCCCTTTAAGACGATCATAAACAGATTTTGGTTTAATGTTCTTTCTCGCaatagatgattacggaaaagttggcgtcggggggcatttgaccaagatgcattgcgttctataatagaatcaacagtgattctatagaaattcgatcaccaaatgcaattcatcttggtcaaatgccccccgacgccatcttttccgtaatcgtctattttcatagtttGGATAAAGCCCTTCACACGCAACGAATATTATTTTTACGAATTCTACAAGCAAAGCATTACAGCCTCCCTTTTGTAAATAAGCTCCCAAAGCAGTGCTGTAGGAGAAATGCATCTCTTTGTTACATAAAAGCTAGCGGGCTGCATACGGAACGCCGTTTGCCCAAAAATAGTTTATGTGCACAAAACCTAGTTTATGTGCACAAAACCTAGTTTATGTGCACAAAACCTAGTTTATGTGCACAAAACCTAGTTTATGTGCACAAAACCTAGTTTATGTGCACAAAAAATGACATAAACTATGTTTATGTACGCATAAACCTAACTTATGTAACATAAACCTAGTTTATGTCATTTTTGTGAAAACGGCTTTCCATGGCTGCATTTTTTGTGGCAAAATTGGCTATGAGATCATATGACCAACTTTAACCTATTTTGACCAACTTTGAAAAGGCCAGGCTCCAACGCTATGGAGAGGATTTACACATATGTTAGAAATCTTCAAAGTAAAGTAAATACGAAGAATCTACTTGGTAATCGTCGTGTGTCGTGAATACGTAAACATGAATTAAAGAATAGATTTTTAA

Protein

Gene family

Family type	Membership / link
Transcription factor family	ZBTB · all TF in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00917 all species →	MATH	MATH domain	Domain	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24413 all species →	SPECKLE-TYPE POZ PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030162 all species →	Biological Process	regulation of proteolysis	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10523	SPOP; speckle-type POZ protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.