Gene detail

Detailed information of scaffold95.g7.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold95:205022...216464
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold95.g7.t2

atttattgtggcctgccaaacgtgcatagtttattttggcgcacccggtacttcgtcaactgtgataagtctagtttttctttctccctgtttcatgaattctcttctttgacgaggatttgcgaaatggcctccgtttctttttcacgctttctttagacttcttcgttgctgctggtatatctcctttcttatacccatcttcaaaatcatcatcttcatatccatcataatcatcataaccatcgtcatcatcataataatgatcatgatgatgatgatgtccaaataatctatggcccccatagggataaaatacattaggcccaggcatgtggtgatgatggtggtgatgatagtgcctcggtcccccttcataatatatcggtgatattggatgctctacaatcggcgttgaatggaagatatgaggcatttcatggataacgtgctcctcgtgttcgtattcgatatgttctggctcgatatgatgttgaattatctcctcaggccgagacataacttgcaaagatgctggtctggcttttacgtttatgccagcggcgctagtttgtacttcgattcccggagagctatcgtccatctgaaaatgcgttggttgcccgatcgtccccttactggcagctgctgctcttttgtcgcccgttgttacgattttcggctgagcaagtttcgtgatgctagttttctcgtgattgtttgatgtgcctggcttttgaaaaagagctgctagtccgggatgatacagaaccaagatagttacagcgaagcatagcagttccatgctacctctcattttcaatgtaaaattttagacgtggatacctgcgaaatccaggatcagctctccaacaactcttcgactgttcacacaagttcttctccagctagcaatgtatgatacagaggattgtgcagggattatattaatcaaatccttagcatttaaattctataacatgcagcacttctgttcctagaagtgcctacttccaacatatcattaaaaagctctccaatttgtcgtagaattaattaacgaaagtgccttttgttgaaaagtgatcacgtaatatgacttaacttgcttgttatctaccaaacgaggcatggggtggattttacagcatcgaatcttctcacaacagattgactaaaatgtatcaattccagtcgaggaaaatcattcttgatctctcgatttctttcgatcattcgatcccttatgatataggtacattgcatgcatgcactcgactgctagactccaacaacaggtgcctaacaatgcaattaaaatgaagctacgaaaaaatggacaaggattcagtcaatattttatgggcacaccatcatttgctatcttataagatggcttgatttctttattctctccattttcttccaaattaaccttcctatcgagttcagttcgcctccaaaatcgttcccttgttgtctcaatattatcttttattccttccaagtgctgaattctatgttgctcgtagtcattaatttcccttgcttggcgttcctctatatcatttgcatgatgtctcagaacactcattcggtctccgtgtccttgaacggtcaaaacattctgcctttcccaatgaaaatctttgaatctgttcatcagccgctcttgctccttgaaggaaggatggttccgtgcataatcaagcccctttaagccttctgcaagtggccctggattcaggtccttcttgtagtctttaatcttgacattatggtccatttggttcattttgatgcttggagaactggtacagccgttttagactctacttccttgattaggattctttaggcctttatcgtcgccttgactaccaaacaatcagttttcaaactgaggttccaatgatatctggaagatctttaggtttcactggaggaaccttggacaaactggagtccattccaggattcagaaccaatttcacaagtgcagaaataaagaaaatgattgacaatgttggttgctgcatagttggccaaactcagtcattggttcctgccgataaagttctttatagtatcagggacattactggaactgttgcttgtatacctcttgttgccagctcaattgtctcaaagaaagcagcagaaagcctgagagcattagttctggatgtcaaatgtggcatgggatgtttcaacaaaacaagagaagttgctgatacccttgccaatgcaatggttactgtgagtgctggactgggcatcaaaacaactgccttcattaccgaaatggacaaccctataggaaaagccgttggaaattcagtggaggtcgcagaatctcttgattgtctgaatggtaaagggcctgaagatttgctggagcttgtctgcaagcaaggtggagaactccttttcttggcgaacaaagccagctcatccgaagagggccacgacaaaatcctgtcaacacttacagatggcagtgcaatgctaaaattcaaacaaatgatacaagcacagggagtcgaggaaggtatcgcagaaaagctttgtaatggtaaaggtaactattatgatattctcccactctcgatacagaagacagaaatctctgcccaagctaccggtgttttaacagcaatcgatgccctatgctgtgcagaagtcactgctgcacttggagccggtcgaacgaagcctggagaaccggtgttacacaatgtaggattgtatttccattgccgtgttggggatgtggtaaaagcaggggtttctttggtaaccgtttaccacaagaatgagaagttggagaaggggtttgaagacaggctgaagaatgtgttcactattgattctagcgttcagaaggctaaggagatacagtcaagggtgttacatgttgtcaaaagtaactaatatgagaagagtcattaatataaacgaaattactatacgaattatgggtgatgtgaatcgacttgtcattaaaggtgacctgaagcgaaaatctttactgatgcaaatgattggcactatttaatgttcaatgataaaaaatgccgcttaagatttttcggtatatcttatttatttttcgacttgatatccaccatcttgtaagattggctgatgacgttattttatttgcaaaaagtacaaaaagtatgcaatgctgagtatatttccgaaggaaaatctagtcaaaaaactgtttttttagggtaaacatcatatcaattcgttatacgatttacattccatttatgtagctctgctgaaactactatgtaacgaaaacagtactaggaacaaccacagttcccttgtttttttgcatatatttttatccttgtaatttgcaaacaaaatgacaccattagctgatacttaaaatcagtggatacctcgaaaacaaaattatacatcaaacaattttaaacgacacttttttgcaatccaacagtgctatttatttgcaacaataaaattttcgcttcaggtcacttgtgatgtacatagggccgtacagggcgtcccaaaaaaagtgcaccgaattggtttgatccagcgatgtaaattcagctttaatcaatatctaatcactctcaaaatgttccccgatagttaacttgaacatagatacaaaagtatacagaattggcttgatccagcgatgtgaatttagctttaatcaagggctaatctctttcataatgttcctcaaaatgttcctcaatattcaagttgaacataaatacctcgtttgttggtattgatgctttgaaagcagacatattaatcacgagagcccaaatttgcttccacctccaaaaccagagctatggcgttttggcctaaagaaattgttgatgcacagcaatgaatcaacgatagccttgata

Transcript

scaffold95.g7.t2

atttattgtggcctgccaaacgtgcatagtttattttggcgcacccggtaCTTCGTCAACTGTGATAAGTCTAGTTTTTCTTTCTCCCTGTTTCATGAATTCTCTTCTTTGACGAGGATTTGCGAAATGGCCTCCGTTTCTTTTTCACGCTTTCTTTAGACTTCTTCGTTGCTGCTGGTATATCTCCTTTCTTATACCcatcttcaaaatcatcatcttcatatccatcataatcatcataaccatcgtcatcatcataataatgatcatgatgatgatgatGTCCAAATAATCTATGGCCCCCATAGGGATAAAATACATTAGGCCCAGGCATGTGGTGATGATGGTGGTGATGATAGTGCCTCGGTCCCCCTTCATAATATATCGGTGATATTGGATGCTCTACAATCGGCGTTGAATGGAAGATATGAGGCATTTCATGGATAACGTGCTCCTCGTGTTCGTATTCGATATGTTCTGGCTCGATATGATGTTGAATTATCTCCTCAGGCCGAGACATAACTTGCAAAGATGCTGGTCTGGCTTTTACGTTTATGCCAGCGGCGCTAGTTTGTACTTCGATTCCCGGAGAGCTATCGTCCATCTGAAAATGCGTTGGTTGCCCGATCGTCCCCTTACTGGCAGCTGCTGCTCTTTTGTCGCCCGTTGTTACGATTTTCGGCTGAGCAAGTTTCGTGATGCTAGTTTTCTCGTGATTGTTTGATGTGCCTGGCTTTTGAAAAAGAGCTGCTAGTCCGGGATGATACAGAACCAAGATAGTTACAGCGAAGCATAGCAGTTCCATGCTACCTCTCATTTTCAATGTAAAATTTTAGACGTGGATACCTGCGAAATCCAGGATCAGCTCTCCAACAACTCTTCGACTGTTCACACAAGTTCTTCTCCAGCTAGCAATGTATGATACAGAGGATTGTGCAGGGATTATATTAATCAAATCCTTAGCATTTAAATTCTATAACATGCAGCACTTCTGTTCCTAGAAGTGCCTACTTCCAACATATCATTAAAAAGCTCTCCAATTTGTCGTAGAATTAATTAACGAAAGTGCCTTTTGTTGAAAAGTGATCACGTAATATGACTTAACTTGCTTGTTATCTACCAAACGAGGCATGGGGTGGATTTTACAGCATCGAATCTTCTCACAACAGATTGACTAAAATGTATCAATTCCAGTCGAGGAAAATCATTCTTGATCTCTCGATTTCTTTCGATCATTCGATCCCTTATGATATAGGTACATTGCATGCATGCACTCGACTGCTAGACTCCAACAACAGGTGCCTAACAATGCAATTAAAATGAAGCTACGAAAAAATGGACAAGGATTCAGTCAATATTTTATGGGCACACCATCATTTGCTATCTTATAAGATGGCTTGATTTCTTTATTCTCTCCATTTTCTTCCAAATTAACCTTCCTATCGAGTTCAGTTCGCCTCCAAAATCGTTCCCTTGTTGTCTCAATATTATCTTTTATTCCTTCCAAGTGCTGAATTCTATGTTGCTCGTAGTCATTAATTTCCCTTGCTTGGCGTTCCTCTATATCATTTGCATGATGTCTCAGAACACTCATTCGGTCTCCGTGTCCTTGAACGGTCAAAACATTCTGCCTTTCCCAATGAAAATCTTTGAATCTGTTCATCAGCCGCTCTTGCTCCTTGAAGGAAGGATGGTTCCGTGCATAATCAAGCCCCTTTAAGCCTTCTGCAAGTGGCCCTGGATTCAGGTCCTTCTTGTAGTCTTTAATCTTGACATTATGGTCCATTTGGTTCATTTTGATGCTTGGAGAACTGGTACAGCCGTTTTAGACTCTACTTCCTTGATTAGGATTCTTTAGGCCTTTATCGTCGCCTTGACTACCAAACAATCAGTTTTCAAACTGAGGTTCCAATGATATCTGGAAGATCTTTAGGTTTCACTGGAGGAACCTTGGACAAACTGGAGTCCATTCCAGGATTCAGAACCAATTTCACAAGTGCAGAAATAAAGAAAATGATTGACAATGTTGGTTGCTGCATAGTTGGCCAAACTCAGTCATTGGTTCCTGCCGATAAAGTTCTTTATAGTATCAGGGACATTACTGGAACTGTTGCTTGTATACCTCTTGTTGCCAGCTCAATTGTCTCAAAGAAAGCAGCAGAAAGCCTGAGAGCATTAGTTCTGGATGTCAAATGTGGCATGGGATGTTTCAACAAAACAAGAGAAGTTGCTGATACCCTTGCCAATGCAATGGTTACTGTGAGTGCTGGACTGGGCATCAAAACAACTGCCTTCATTACCGAAATGGACAACCCTATAGGAAAAGCCGTTGGAAATTCAGTGGAGGTCGCAGAATCTCTTGATTGTCTGAATGGTAAAGGGCCTGAAGATTTGCTGGAGCTTGTCTGCAAGCAAGGTGGAGAACTCCTTTTCTTGGCGAACAAAGCCAGCTCATCCGAAGAGGGCCACGACAAAATCCTGTCAACACTTACAGATGGCAGTGCAATGCTAAAATTCAAACAAATGATACAAGCACAGGGAGTCGAGGAAGGTATCGCAGAAAAGCTTTGTAATGGTAAAGGTAACTATTATGATATTCTCCCACTCTCGATACAGAAGACAGAAATCTCTGCCCAAGCTACCGGTGTTTTAACAGCAATCGATGCCCTATGCTGTGCAGAAGTCACTGCTGCACTTGGAGCCGGTCGAACGAAGCCTGGAGAACCGGTGTTACACAATGTAGGATTGTATTTCCATTGCCGTGTTGGGGATGTGGTAAAAGCAGGGGTTTCTTTGGTAACCGTTTACCACAAGAATGAGAAGTTGGAGAAGGGGTTTGAAGACAGGCTGAAGAATGTGTTCACTATTGATTCTAGCGTTCAGAAGGCTAAGGAGATACAGTCAAGGGTGTTACATGTTGTCAAAAGTAACTAATATGAGAAGAGTCATTAATATAAACGAAATTACTATACGAATTATGGGTGATGTGAATCGACTTGTCAttaaaggtgacctgaagcgaaaatctttactgatgcaaatgattggcactatttaatgttcaatgataaaaaatgccgcttaagatttttcggtatatcttatttatttttcgacttgatatccaccatcttgtaagattggctgatgacgttattttatttgcaaaaagtacaaaaagtatgcaatgctgagtatatttccgaaggaaaatctagtcaaaaaactgtttttttagggtaaacatcatatcaattcgttatacgatttacattccatttatgtagctctgctgaaactactatgtaacgaaaacagtactaggaacaaccacagttcccttgtttttttgcatatatttttatccttgtaatttgcaaacaaaatgacaccattagctgatacttaaaatcagtggatacctcgaaaacaaaattatacatcaaacaattttaaacgacacttttttgcaatccaacagtgctatttatttgcaacaataaaattttcgcttcaggtcacttGTGATGTACATAGGGCCGtacagggcgtcccaaaaaaagtgcaccgaattggtttgatccagcgatgtaaattcagctttaatcaatatctaatcactctcaaaatgttccccgatagttaacttgaacatagatacaaaagtatacagaattggcttgatccagcgatgtgaatttagctttaatcaagggctaatctctttcataatgttcctcaaaatgttcctcaatattcaagttgaacataaatacctcgtttgttggtattgatgctttgaaagcagacatattaatcacgagagcccaaatttgcttccacctccaaaaccagagctatggcgttttggcctaaagaaattgttgatgcacagcaatgaatcaacgatagccttgata

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00591 all species →	Glycos_transf_3	Glycosyl transferase family, a/b domain	Family	Interproscan
PF07831 all species →	PYNP_C	Pyrimidine nucleoside phosphorylase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013102 all species →	Domain	Pyrimidine nucleoside phosphorylase, C-terminal	Interproscan
IPR036566 all species →	Homologous_superfamily	Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily	Interproscan
IPR000053 all species →	Family	Thymidine/pyrimidine-nucleoside phosphorylase	Interproscan
IPR035902 all species →	Homologous_superfamily	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily	Interproscan
IPR000312 all species →	Domain	Glycosyl transferase, family 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10515 all species →	THYMIDINE PHOSPHORYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006213 all species →	Biological Process	pyrimidine nucleoside metabolic process	Interproscan
GO:0016763 all species →	Molecular Function	pentosyltransferase activity	Interproscan
GO:0004645 all species →	Molecular Function	1,4-alpha-oligoglucan phosphorylase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006206 all species →	Biological Process	pyrimidine nucleobase metabolic process	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold95.g7.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.