Gene detail

Detailed information of scaffold970.g10.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold970:71771...126764
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold970.g10.t1

attagattccaggctttttgttcctcctcttcgcgtccttgttgcatcaggtgcaggtcacacttcaacttagcatcagccatggcagatatctccaaaatattcggttacattgatgagcatattgaggagtacatcaagacacttggagaatgggttgccatcaagagtgtttctgcatggtcagaaagtaggggtgaagttatccgaatggtcaaacatgttgcagcggaattagaaaagcttggtgcagaggttgagcttgctgacaatccccatgttaagcagacatttgccgatggatcagaggttccattgcctccgatcattttgggaactctgggaaaggacccaaagaagaagactatttgcatctatggtcatctagatgtgcaaccggcaaaattggatgatggctgggatacagagccattcactttgattgaaaaagatgggaagctgtacggaaggggttcaaccgatgataagggtcctgtcttggcatggctaaatgttatcgaagcatacaacaaattaggaaaagaaattccagtgaatttaaagatatgtttcgagggtatggaagaatctggcagcgaaggacttgaagacctgatcatggcaagaaaggatacattttttaaggatgttgactacgtttgcatatctgataattactggcttggcaaagaaaagccttgcatcacatacggattgaggggtatctgttacttctttgctgaagtaacttgtgccaagcaagatcttcactctggtgtcttcggtggatctgtgcatgaaggcatgatcgatcttgttaacatccttggtagcctggttgatactcatgggaatatcaaaattgctggaatacacgatacagttaagcatttgtctgaacaagagaaagctttgtacaaaaccattcaattcgatgtggaggagagcaggcaagacattggtgctccaaaactcattcaccaagggaaagaaaatggcaaagagctaacactgatgcatcgatggcgatacccatcactatcagttcatggtgttgaaggagcatttgatgcacccggtgcaaaaactgtcattcctaagaaggtcattggtaaattctcaataaggatagtgcctgaccaaaaaccggaggcgatagagaaacttgtgattgatcactgtgaatcagttcataaaagcagtggaagcccaaacacattgaaagtatcaatgggacatggcggaaagccttggatgtgtgatccagatcatgctcactttgttgcagggcgcaaggcaacgaaacttgtacacaacgtagaaccggatatgacacgcgaaggcggaagtattcctgtgactctggtattccaggaagccactggcaagaacgtgatgttattaccaatgggttgtgcagatgatggtgcccattctcagaatgaaaagctcaatagatctaattttttgaaggggacaaagctgcttgctgcttacttagaagaagtggccaaaatcaaagaataacatttcaaacatttcttttgataatgtatggagcaaataatttcatttaattttcctagttctaggcaatggtatctaataatgcattcaagaagattttgaatttcagattccatttttacatcaacagccaacaaggacagatgtcgtaacacatcagttgctttaattgacacctcagtccaaagcgattatcgattgcagaaattttctcgaccagtaattcaaaacaaacaaagctgcaaagttaccctgaagccggtaggggaaactctcgccttgtgcacgcgaagggtggtttttacaagaagttatgtgcttataatgaaagaggaagggtaaatgtaaagttctgcccgagttttgcctggcggattttgtttatttgattcaggagctgagaagtaatgttacatttttgcattaaatatgcaagaattacaatgccttgtgctcgctgttcggcttctgaatcaaatagacaaaatacgcctggcagaactggggcattcatgccaagtctttagaaaatttgatcgaccattttgattgttttcaatgctttcgaaaacgaacattttgaagagctcgcttatagctttgaaaactgaaaacagaaaatttggactagaatattcatctattcattcagatctatcacacacgatcagtctgttagttgtttgtgaaggaagcaaaatcaaaatgagttagaaactgctttcaagaaattctgtttatggctctagacaattaagaaaccatgacagaaagaagaggtcagtaatagaaagaaaaggtaatttttttcaaatgcactcttcattaaaattctagtttcctttgcatacacaaaattaggcaaattcttacccttattgagaacttaaacttattaaacgctgcatgcgattcaaagcatttttcctagatgttatgatgctttcagtgaaggaaagtacttgcagactcttacaaaatcaatattttaacaacaaagcagttaatttcaacaactttgttctcctttttcatgcgtgtttacagttcgaacgcttgtcctaaattcaaatcaacataacatgtcagattacagacactgcgtgatttatgcgtgattataagcgaacaaccagtatttgaaaaagctcttagaattttcctgtgctggcccccagttcaacttcccgtaaggattgtttattggccatagcaacgggctctgacaacagcaacgtaggacgcgcttgtgaaactagtgaacaatggagttcggaggttctttaaggcttcacctgacaagccgctcatctggatgagactcatcgattatgttttctttatctggatgcacggggaggaaaagctgaagtctttcatcaatcatctcaacagtagccacgaaaccattaagtttactagcgagcaatcgcaggatggtattagttatttatatgttcaggttagcgtgggggaggggagagtcctttcgacagacttgttttgcatgccaactgatacacatcagtacttgcataaggccatgtttgtcttcaaaaggactctatttcgatgtaacgtgaacacaacagaacgctttttgtgaataaagggatattgtgaataaaacaaaacaatgttggttaatctgtgttgaaatattcagcaatacagggtgtcccaaaaaaattgtgccccgtttgtctgaagattgcgacaagacggcaaaagattctcaccaaacttttgcatgatggtgctcttcagatgttcaaataaagtttgctgccattcccgtcaaaatccatttaaaaatgatggaactatggccttcagatgccttcaaaagaccaaatttgtctgatgactgaaaccagaggtcggccattttgtcttactattttcagtgatagataacttcacgtgaggtaagaaataatttctgtgagg

Transcript

scaffold970.g10.t1

ATTAGATTCCAGGCTTTTTGTTCCTCCTCTTCGCGTCCTTGTTGCATCAGGTGCAGGTCACACTTCAACTTAGCATCAGCCATGGCAGATATCTCCAAAATATTCGGTTACATTGATGAGCATATTGAGGAGTACATCAAGACACTTGGAGAATGGGTTGCCATCAAGAGTGTTTCTGCATGGTCAGAAAGTAGGGGTGAAGTTATCCGAATGGTCAAACATGTTGCAGCGGAATTAGAAAAGCTTGGTGCAGAGGTTGAGCTTGCTGACAATCCCCATGTTAAGCAGACATTTGCCGATGGATCAGAGGTTCCATTGCCTCCGATCATTTTGGGAACTCTGGGAAAGGACCCAAAGAAGAAGACTATTTGCATCTATGGTCATCTAGATGTGCAACCGGCAAAATTGGATGATGGCTGGGATACAGAGCCATTCACTTTGATTGAAAAAGATGGGAAGCTGTACGGAAGGGGTTCAACCGATGATAAGGGTCCTGTCTTGGCATGGCTAAATGTTATCGAAGCATACAACAAATTAGGAAAAGAAATTCCAGTGAATTTAAAGATATGTTTCGAGGGTATGGAAGAATCTGGCAGCGAAGGACTTGAAGACCTGATCATGGCAAGAAAGGATACATTTTTTAAGGATGTTGACTACGTTTGCATATCTGATAATTACTGGCTTGGCAAAGAAAAGCCTTGCATCACATACGGATTGAGGGGTATCTGTTACTTCTTTGCTGAAGTAACTTGTGCCAAGCAAGATCTTCACTCTGGTGTCTTCGGTGGATCTGTGCATGAAGGCATGATCGATCTTGTTAACATCCTTGGTAGCCTGGTTGATACTCATGGGAATATCAAAATTGCTGGAATACACGATACAGTTAAGCATTTGTCTGAACAAGAGAAAGCTTTGTACAAAACCATTCAATTCGATGTGGAGGAGAGCAGGCAAGACATTGGTGCTCCAAAACTCATTCACCAAGGGAAAGAAAATGGCAAAGAGCTAACACTGATGCATCGATGGCGATACCCATCACTATCAGTTCATGGTGTTGAAGGAGCATTTGATGCACCCGGTGCAAAAACTGTCATTCCTAAGAAGGTCATTGGTAAATTCTCAATAAGGATAGTGCCTGACCAAAAACCGGAGGCGATAGAGAAACTTGTGATTGATCACTGTGAATCAGTTCATAAAAGCAGTGGAAGCCCAAACACATTGAAAGTATCAATGGGACATGGCGGAAAGCCTTGGATGTGTGATCCAGATCATGCTCACTTTGTTGCAGGGCGCAAGGCAACGAAACTTGTACACAACGTAGAACCGGATATGACACGCGAAGGCGGAAGTATTCCTGTGACTCTGGTATTCCAGGAAGCCACTGGCAAGAACGTGATGTTATTACCAATGGGTTGTGCAGATGATGGTGCCCATTCTCAGAATGAAAAGCTCAATAGATCTAATTTTTTGAAGGGGACAAAGCTGCTTGCTGCTTACTTAGAAGAAGTGGCCAAAATCAAAGAATAACATTTCAAACATTTCTTTTGATAATGTATGGAGCAAATAATTTCATTTAATTTTCCTAGTTCTAGGCAATGGTATCTAATAATGCATTCAAGAAGATTTTGAATTTCAGATTCCATTTTTACATCAACAGCCaacaaggacagatgtcgtaacacatcagttgctttaattgacacctcagtccaaagcgattatcgattgcagaaattttctcgaccagtaattcaaaacaaacaaagctgcaaagttaccctgaagccggtaggggaaactctcgccttgtgcacgcgaagggtggtttttacaagaagttatgtgcttataatgaaagaggaagggtaaatgtaaagttctgcccgagttttgcctggcggattttgtttatttgattcaggagctgagaagtaatgttacatttttgcattaaatatgcaagaattacaatgccttgtgctcgctgttcggcttctgaatcaaatagacaaaatacgcctggcagaactGGGGcattcatgccaagtctttagaaaatttgatcgaccattttgattgttttcaatgctttcgaaaacgaacattttgaagagctcgcttatagctttgaaaactgaaaacagaaaatttgGACTAGAATATTCATCTATTCATTCAGATCTATCACACACGATCAGTCTGTTAGTTGTTTGTGAAGGAAGCAAAATCAAAATGAGTTagaaactgctttcaagaaattctgtttatggctctagacaattaagaaaccatgacagaaagaagaggtcagtaatagaaagaaaaggtaatttttttcaaatgcactcttcattaaaattctagtttcctttgcatacacaaaattaggcaaattcttacccttattgagaacttaaacttattaaacgctgcatgcgattcaaagcatttttcctagatgttatgatgctttcagtgaaggaaagtacttgcagactcttacaaaatcaatattttaacaacaaagcagttaatttcaacaactttgTTCTCCTTTTTCATGCGTGTTTACAGTTCGAACGCTTGTcctaaattcaaatcaacataacatgtcagattacagacactgcgtgatttatgcgtgattataagcgaacaaccagtatttgaaaaagctcttagaattttcctgtgctggcccccagttcaacttcccgtaaggattgtttattggccatagcaacgggctctgacaacagcaacgtaggacgcgcttgtgaaactagtgaacaatggagttcggaggttctttaaggcttcacctgacaagccgctcatctggatgagactcatcgattatgttttctttatctggatgcacggggaggaaaagctgaagtctttcatcaatcatctcaacagtagccacgaaaccattaagtttactagcgagcaatcgcaggatggtattagttatttatatgttcaggttagcgtgggggaggggagagtcctttcgacagacttgttttgcatgccaactgatacacatcagtacttgcataaggccatgtttgtcttcaaaaggactctatttcgatgtaacgtgaacacaacagaacgctttttgtgaataaagggatattgtgaataaaacaaaacaatgttggttaatctgtgttgaaatattcagcaatacagggtgtcccaaaaaaattgtgccccgtttgtctgaagattgcgacaagacggcaaaagattctcaccaaacttttgcatgatggtgctcttcagatgttcaaataaagtttgctgccattcccgtcaaaatccatttaaaaatgatggaactatggccttcagatgccttcaaaagaccaaatttgtctgatgactgaaaccagaggtcggccattttgtcttactattttcagtgatagataacttcacgtgaggtaagaaataatttctgtgagg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07687 all species →	M20_dimer	Peptidase dimerisation domain	Domain	Interproscan
PF01546 all species →	Peptidase_M20	Peptidase family M20/M25/M40	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017153 all species →	Family	Cytosolic nonspecific dipeptidase/DUG1	Interproscan
IPR001261 all species →	Conserved_site	ArgE/DapE/ACY1/CPG2/YscS, conserved site	Interproscan
IPR011650 all species →	Domain	Peptidase M20, dimerisation domain	Interproscan
IPR051458 all species →	Family	Cytosolic and Metallo Dipeptidase	Interproscan
IPR002933 all species →	Family	Peptidase M20	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43270 all species →	BETA-ALA-HIS DIPEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070573 all species →	Molecular Function	metallodipeptidase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0016805 all species →	Molecular Function	dipeptidase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08660	CNDP2; cytosolic nonspecific dipeptidase	EC:3.4.13.18	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.