Gene detail

Detailed information of scaffold98.g9.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold98:101703...138804
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold98.g9.t1

agttggtgcatatataaagaaacctccaaaattcaataactatgtcaggagaggaacaggcatcagtttgacatgtgttggatttggaaatccgatcccaaaaatcatttggtttcctgcaacggctaatatttcagatacgactcactttcaaagtgaatcttcagttaatggatttgtcatcgaaagtaagctggtgattcgtcgaattagagaacaagatggtggaaatttcacatgttttgtgatcaatagcttctcagatccgaacagagcaatggcaatggttttcgttcgagacgtgcctaactgctgccatttcactgttcagcatgcaagctcaggagccaccacagtatcatggaaagttatatctgatggaggaagccctattacgctctatgatatgtcacttaaacggaaaggcagcaggggcacgtcttcatctagtgatatcaagagcagcgcaacatttaaatacctgaagcctgatactgaatatcaacttggaatcgtagcaaggaatgacattggttcttcaaataggtcatatgtgacatttaaaactcaaagtgcagaatataccaattgcttaacgttgaagacaaagaaaatcacatccacagtggtagaccttgaatggagtcgcaagtgtaatgccactacgtcatcaatcttcaactacttatatgttattgttcagaagaaagcagttgttgttaatgagtccaaataccaaagagacaaatggcacagaaattttactcttgagaatttaaagcctttcactgagtataatttaaaggtgcgggagatagcgacatctgcaaagcaagggtttgaaagtcagttcttggcagttacgactaaacaagcagcaccttccattccacgcgatattaaagcaacattgattggcaagtcgtcaatcaaaataacttggaatgcaccaatggatctgaatggcatcatacgagagtttgagatagagtacggttataatgaaaaggacaagatggttcatgttgctaacaagaagagcattaatgctgttgtgtttccaacacgggagctgatattaaaagacttaatgatgaatacactgtacaatgtttctgtaagagaaagaactgaagttggcttgtggagtgaaatggctcttgttcctattaagactaaagaaggagttccagctgagccaccaaagaatgtgtcagttatgctgagaaacaactcatttataactttgacatggcagcaaatcccaacatcaagcctcaatggtgatcttactggttataaacttattgttgaaaatattacaggacatatagtaataaacgaaacaatgccaccaagccaaactacgattaggattgattctttggagccacatcgccagtatgaattgaagatttatggcttcacaagagctggacccgggaaagcgtattctttcattttcttcacagctgacggagttccatctgtaccacgtaacttcaaggcttctgctgctagtagtacatcaatgaggctgcaatggaggcaaccccagaatacaaacgggatcattatatcatatcaaataaactggatgaaaataaaagaccaaattgatcgaatcagacgatctgctttcgtgaatgatgaaaatagcataaacaaaccgttgaaagacctgaatcagatcagagaatacttcataaggaacttgactccatatagcatatacagcttcagagttagggaaagaactgtccaaggctggggaccgtttacgaagccgatacaagcagggactcttgaaggagaatccagcccacctgtaaatctaaccctacaatcaaagacaagcaaaagtgctacatttcaatggagaatgcctcgcagtcctaatggagctatcaaagtctttacggttctgtgttaccaagataaaacaacattgaaagacaatgagaatatcactattcaaagttcagtatcactttaccaagctacttgtgatggattgaagagtaaaacagaaacaactattatggtatttgcagtaagttcagtaaaaggacaaatgagtatgatttccacaacgactgccgcattacttcttgttcttgaattgtttatagttttgaaaacgaagtatgtagaagtgaaggaggcgatggaagatgttgagatgaacggtgttctaaacagccgaccaatacacattgcgaatcttaagcaatacgtcgtacataaccatacaaacagcgatcatggatttttcactgaatatgaggcaatcagaccatcagttggtaatcttacatgggagcacagccaacagcaatgcaatcaacacaaaaatagatacagcaacattgttgcttatgatcacactagagttatactgagtccactaaacgatgatccaggcaaaacttatatcaatgccaattacattgacggctacaaacatccgaggaagttcatcgcttctcaaggccctcttcctgaaactgtcaatgatttctggagaatgctttacgagcagagaagtcatgtgatcgtcatgctaacacgaatcgtggaagattttaaagtcaaatgtgagcagtattggcctgaccatggaacagtccagtatggtgaaattgttgtcaagttgatagatatcacggaactgagtgattatgttgtcaggactttcaccatcaaagctgcatatgacgtagaagcggtcggaagggaagttaaacaatatcactatcttggttggcctgatcatggagtgcctgagtacccaacatcaatggtcacatttaccaaatatgttatggataatgtacctacgaaaccaggacctatcattgtgcattgcagtgctggcgtcggaagaactggagcgtttatagtgatcgattcaatgctgaatcaaatcagagatgaaagtattgttgatgtttacaaatttgtatccactatgagaaaacaaaggaatttcatggtccaaactgaggctcaatatgttttcatatatgatgcattattagacgctgtcatctgtggtaacacagaggctactgcgcatgatatttcattgaagttacgatatttgaatcagcaaagcccagatacatgtgatacatatttgatgcaggaatttaagcgtctcgaagcaggattgagcagtcaagagaaggaattattcagcattgcaaaccaaccagaaaacaaagaaaagaacagatttttgaatatcttgccatataacagaaaccgagtcaaactggcttttatttatggacaaaagggatctgattatatcaacgccagtttcatagatggatatcggcaacgccatgctttcatagcaacacaaggtccattagaaaacacagttagtgacttttggagaatggtatgggaacagaattgtcacaatattgtcatgcttacgaaactcaaggaaaagggcaaggaacggagttgtcagtattggccatcatgcggtagtgcagtatatggaaagtttttggttgacgaattacgagagactgatgatgaatgtgaaaatgtgaaaagaagggaattaaatctaacgtacagtgagactggcagatcgaggcgagtgaatcattatatgtacactggttggccggaatatggatctcctaattcaggaactgatatcattaaactcatctcactggttcaagaaatgactggtgctcgtggaactggtccggttctggttcattgcagtggtggagctgggcgcactgggacatttattgctatttgtacatgcatacagaagttgaaatcagaaggcagtgttgatattttccaaactgttcggcaattgagaacacagagacccgctatggtacagacaatcgaccaatactacttctgttaccaagcattgaaagacttcgttgatacgacagcagacgtatcgaagaactacgatttggatgaatcgatggcttaaaaatgatgcacatgttcctgcaatggattggcatgctattcaggctagagttgaacgtaagtacataggccagctgattgccacaatccagaattgtgctcaatatatgccaggtaagggggattcatcgtccttcacaatctggttaagtaaacatatcctcgtagatctcagtgaaagttcctttaataacctgttgtctgttttcaacatactgagagctcaaagtaaaaagaaattgggaaaagctgcagtgaaacagactttatctcgtagtacccagcatgaaatattgctttcgttgctttagctgcagctgaaacgaactacatgtagaactactaatatcaacagttagcgagtgcggtgattagagctttggaaacagacagaagcaaattatgaaaaaggtctttgtagctctgttggcattaaattatcgatgcctactttgaaactgctcgttctttggcatcaaaaaccatgtcaaacaccaatcatcaaaaaccaattcccatctaaaaaatcattcagctattgctttcatcattattcatttggaattgaaaattcactcatccatgaacgttgttttgtggccacaactgaaatcagaaacatacacatcccataatagaaaagactgattaagagcgctttgttacctttgacgcatgacctttgacccctacaaacatacaaagatacattaattgcaaattctgattcaacttaacaattaacgcggctgcgccgcagttagtccacacagcagaaaacaacgctggtgacacgaacaagcggggcctaaatgtgtgtttgtagtcttctttgcgaaatctgatggctcatttgtgatggattttctaattttgtgagtcaggcaacatttgattcctaactggtgatgctgtgcagtaaacaagcaattttgtcagcagcatgtccgtcaagattgtatatcgaatattatcaaaggctaggagtggacacctttgtggtcattttcttcaacagacaagttttctagattttcctttaatgctgaagactcttctagtggtataaaacttagatctgtacgactattgaatcattatgcacacacaggctttctatcgcatagtctgtaaactcaaactttaatattaataggtacattcttggcaaatttaggaaaacagataattccccgttgatatttgtatatcgatgattagaatattaatatatacaaatgcaacaatgcttacaggtccacatcagcttttaagctgccttgattatgacctgcgttaacaaataataaatgtatgtatgtatgtatgtaacagtatcgctttgaattgttttcgtgttaccgtttttctagcatacatttataatgaatcttagtatttttgtattttgctactattaagttattttttgaagtgttcgtatttatttcttatgttttataagtatgataaatacatcataagctatgatatcttttgtaacttaataaaggaagtttaaggcttatagtagtatactgtccaccaatgtaggaaagtattattacgtgttattcaattttacgcttaagtctttgtatgcataatgttgagtcaagttgaatagaggtaatttccgttgcagctttgactgccagcaattacgtgctgggcgttaagaaagtgtccccatttgttttgatttggatggagtgcgacaaaatgggaatgggttagtatgggagagaatgggtcacttgacttttgcttcttaaaagaagcaagctgtccttggctagtgacatccgaatacaccactttaattaag

Transcript

scaffold98.g9.t1

AGTTGGTGCATATATAAAGAAACCTCCAAAATTCAATAACTATGTCAGGAGAGGAACAGGCATCAGTTTGACATGTGTTGGATTTGGAAATCCGATCCCAAAAATCATTTGGTTTCCTGCAACGGCTAATATTTCAGATACGACTCACTTTCAAAGTGAATCTTCAGTTAATGGATTTGTCATCGAAAGTAAGCTGGTGATTCGTCGAATTAGAGAACAAGATGGTGGAAATTTCACATGTTTTGTGATCAATAGCTTCTCAGATCCGAACAGAGCAATGGCAATGGTTTTCGTTCGAGACGTGCCTAACTGCTGCCATTTCACTGTTCAGCATGCAAGCTCAGGAGCCACCACAGTATCATGGAAAGTTATATCTGATGGAGGAAGCCCTATTACGCTCTATGATATGTCACTTAAACGGAAAGGCAGCAGGGGCACGTCTTCATCTAGTGATATCAAGAGCAGCGCAACATTTAAATACCTGAAGCCTGATACTGAATATCAACTTGGAATCGTAGCAAGGAATGACATTGGTTCTTCAAATAGGTCATATGTGACATTTAAAACTCAAAGTGCAGAATATACCAATTGCTTAACGTTGAAGACAAAGAAAATCACATCCACAGTGGTAGACCTTGAATGGAGTCGCAAGTGTAATGCCACTACGTCATCAATCTTCAACTACTTATATGTTATTGTTCAGAAGAAAGCAGTTGTTGTTAATGAGTCCAAATACCAAAGAGACAAATGGCACAGAAATTTTACTCTTGAGAATTTAAAGCCTTTCACTGAGTATAATTTAAAGGTGCGGGAGATAGCGACATCTGCAAAGCAAGGGTTTGAAAGTCAGTTCTTGGCAGTTACGACTAAACAAGCAGCACCTTCCATTCCACGCGATATTAAAGCAACATTGATTGGCAAGTCGTCAATCAAAATAACTTGGAATGCACCAATGGATCTGAATGGCATCATACGAGAGTTTGAGATAGAGTACGGTTATAATGAAAAGGACAAGATGGTTCATGTTGCTAACAAGAAGAGCATTAATGCTGTTGTGTTTCCAACACGGGAGCTGATATTAAAAGACTTAATGATGAATACACTGTACAATGTTTCTGTAAGAGAAAGAACTGAAGTTGGCTTGTGGAGTGAAATGGCTCTTGTTCCTATTAAGACTAAAGAAGGAGTTCCAGCTGAGCCACCAAAGAATGTGTCAGTTATGCTGAGAAACAACTCATTTATAACTTTGACATGGCAGCAAATCCCAACATCAAGCCTCAATGGTGATCTTACTGGTTATAAACTTATTGTTGAAAATATTACAGGACATATAGTAATAAACGAAACAATGCCACCAAGCCAAACTACGATTAGGATTGATTCTTTGGAGCCACATCGCCAGTATGAATTGAAGATTTATGGCTTCACAAGAGCTGGACCCGGGAAAGCGTATTCTTTCATTTTCTTCACAGCTGACGGAGTTCCATCTGTACCACGTAACTTCAAGGCTTCTGCTGCTAGTAGTACATCAATGAGGCTGCAATGGAGGCAACCCCAGAATACAAACGGGATCATTATATCATATCAAATAAACTGGATGAAAATAAAAGACCAAATTGATCGAATCAGACGATCTGCTTTCGTGAATGATGAAAATAGCATAAACAAACCGTTGAAAGACCTGAATCAGATCAGAGAATACTTCATAAGGAACTTGACTCCATATAGCATATACAGCTTCAGAGTTAGGGAAAGAACTGTCCAAGGCTGGGGACCGTTTACGAAGCCGATACAAGCAGGGACTCTTGAAGGAGAATCCAGCCCACCTGTAAATCTAACCCTACAATCAAAGACAAGCAAAAGTGCTACATTTCAATGGAGAATGCCTCGCAGTCCTAATGGAGCTATCAAAGTCTTTACGGTTCTGTGTTACCAAGATAAAACAACATTGAAAGACAATGAGAATATCACTATTCAAAGTTCAGTATCACTTTACCAAGCTACTTGTGATGGATTGAAGAGTAAAACAGAAACAACTATTATGGTATTTGCAGTAAGTTCAGTAAAAGGACAAATGAGTATGATTTCCACAACGACTGCCGCATTACTTCTTGTTCTTGAATTGTTTATAGTTTTGAAAACGAAGTATGTAGAAGTGAAGGAGGCGATGGAAGATGTTGAGATGAACGGTGTTCTAAACAGCCGACCAATACACATTGCGAATCTTAAGCAATACGTCGTACATAACCATACAAACAGCGATCATGGATTTTTCACTGAATATGAGGCAATCAGACCATCAGTTGGTAATCTTACATGGGAGCACAGCCAACAGCAATGCAATCAACACAAAAATAGATACAGCAACATTGTTGCTTATGATCACACTAGAGTTATACTGAGTCCACTAAACGATGATCCAGGCAAAACTTATATCAATGCCAATTACATTGACGGCTACAAACATCCGAGGAAGTTCATCGCTTCTCAAGGCCCTCTTCCTGAAACTGTCAATGATTTCTGGAGAATGCTTTACGAGCAGAGAAGTCATGTGATCGTCATGCTAACACGAATCGTGGAAGATTTTAAAGTCAAATGTGAGCAGTATTGGCCTGACCATGGAACAGTCCAGTATGGTGAAATTGTTGTCAAGTTGATAGATATCACGGAACTGAGTGATTATGTTGTCAGGACTTTCACCATCAAAGCTGCATATGACGTAGAAGCGGTCGGAAGGGAAGTTAAACAATATCACTATCTTGGTTGGCCTGATCATGGAGTGCCTGAGTACCCAACATCAATGGTCACATTTACCAAATATGTTATGGATAATGTACCTACGAAACCAGGACCTATCATTGTGCATTGCAGTGCTGGCGTCGGAAGAACTGGAGCGTTTATAGTGATCGATTCAATGCTGAATCAAATCAGAGATGAAAGTATTGTTGATGTTTACAAATTTGTATCCACTATGAGAAAACAAAGGAATTTCATGGTCCAAACTGAGGCTCAATATGTTTTCATATATGATGCATTATTAGACGCTGTCATCTGTGGTAACACAGAGGCTACTGCGCATGATATTTCATTGAAGTTACGATATTTGAATCAGCAAAGCCCAGATACATGTGATACATATTTGATGCAGGAATTTAAGCGTCTCGAAGCAGGATTGAGCAGTCAAGAGAAGGAATTATTCAGCATTGCAAACCAACCAGAAAACAAAGAAAAGAACAGATTTTTGAATATCTTGCCATATAACAGAAACCGAGTCAAACTGGCTTTTATTTATGGACAAAAGGGATCTGATTATATCAACGCCAGTTTCATAGATGGATATCGGCAACGCCATGCTTTCATAGCAACACAAGGTCCATTAGAAAACACAGTTAGTGACTTTTGGAGAATGGTATGGGAACAGAATTGTCACAATATTGTCATGCTTACGAAACTCAAGGAAAAGGGCAAGGAACGGAGTTGTCAGTATTGGCCATCATGCGGTAGTGCAGTATATGGAAAGTTTTTGGTTGACGAATTACGAGAGACTGATGATGAATGTGAAAATGTGAAAAGAAGGGAATTAAATCTAACGTACAGTGAGACTGGCAGATCGAGGCGAGTGAATCATTATATGTACACTGGTTGGCCGGAATATGGATCTCCTAATTCAGGAACTGATATCATTAAACTCATCTCACTGGTTCAAGAAATGACTGGTGCTCGTGGAACTGGTCCGGTTCTGGTTCATTGCAGTGGTGGAGCTGGGCGCACTGGGACATTTATTGCTATTTGTACATGCATACAGAAGTTGAAATCAGAAGGCAGTGTTGATATTTTCCAAACTGTTCGGCAATTGAGAACACAGAGACCCGCTATGGTACAGACAATCGACCAATACTACTTCTGTTACCAAGCATTGAAAGACTTCGTTGATACGACAGCAGACGTATCGAAGAACTACGATTTGGATGAATCGATGGCTTAAAAATGATGCACATGTTCCTGCAATGGATTGGCATGCTATTCAGGCTAGAGTTGAACGTAAGTACATAGGCCAGCTGATTGCCACAATCCAGAATTGTGCTCAATATATGCCAGGTAAGGGGGATTCATCGTCCTTCACAATCTGGTTAAGTAAACATATCCTCGTAGATCTCAGTGAAAGTTCCTTTAATAACCTGTTGTCTGTTTTCAACATACTGAGAGCTCAAAGTAAAAAGAAATTGGGAAAAGCTGCAGTGAAACAGACTTTATCTCGTAGTACCCAGCATGAAATATTGCTTTCGTTGCTTTAGCTGCAGCTGAAACGAACTACATGTAGAACTACTAATATCAACAGTTAGCGAGTGCGGTGATTAGAGCTTTGGAAACAGACAGAAGCAAATTATGAAAAAGGTCTTTGTAGCTCTGTTGGCATTAAATTATCGATGCCTACTTTGAAACTGCTCGTTCTTTGGCATCAAAAACCATGTCAAACACCAATCATCAAAAACCAATTCCCATCTAAAAAATCATTCAGCTATTGCTTTCATCATTATTCATTTGGAATTGAAAATTCACTCATCCATGAACGTTGTTTTGTGGCCACAACTGAAATCAGAAACATACACATCCCATAATAGAAAAGACTGATTAAGAGCGCTTTGTTACCTTTGACGCATGACCTTTGACCCCTACAAACATACAAAGATACATTAATTGCAAATTCTGATTCAACTTAACAATTAACGCGGCTGCGCCGCAGTTAGTCCACACAGCAGAAAACAACGCTGGTGACACGAACAAGCGGGGCCTAAATGTGTGTTTGTAGTCTTCTTTGCGAAATCTGATGGCTCATTTGTGATGGATTTTCTAATTTTGTGAGTCAGGCAACATTTGATTCCTAACTGGTGATGCTGTGCAGTAAACAAGCAATTTTGTCAGCAGCATGTCCGTCAAGATTGTATATCGAATATTATCAAAGGCTAGGAGTGGACACCTTTGTGGTCATTTTCTTCAACAGACAAGTTTTCTAGATTTTCCTTTAATGCTGAAGACTCTTCTAGTGGTATAAAACTTAGATCTGTACGACTATTGAATCATTATGCACACACAGGCTTTCTATCGCATAGTCTGTAAACTCAAACTTTAATATTAATAGGTACATTCTTGGCAAATTTAGGAAAACAGATAATTCCCCGTTGATATTTGTATATCGATGATTAGAATATTAATATATACAAATGCAACAATGCTTACAGGTCCACATCAGCTTTTAAGCTGCCTTGATTATGACCTGCGTTAACAAATAATAAatgtatgtatgtatgtatgtaACAGTATCGCTTTGAATTGTTTTCGTGTTACCGTTTTTCTAGCATACATTTATAATGAATCTTAGTATTTTTGTATTTTGCTACTATTAAGttattttttgaagtgttcgtatttatttcttatgttttatAAGTATGATAAATACATCATAAGCTATGATATCTTTTGTAACTTAATAAAGGAAGTTTAAGGCTTATAGTAGTATACTGTCCACCAATGTAGGAAAGTATTATTACGTGTTATTCAATTTTACGCTTAAGTCTTTGTATGCATAATGTTGAGTCAAGTTGAATAGAGGTAATTTCCGTTGCAGCTTTGACTGCCAGCAATTACGTGCTGGGCGTTAAGAAAGTGTCCCCATTTGTTTTGATTTGGATGGAGTGCGACAAAATGGGAATGGGTTAGTATGGGAGAGAATGGGTCACTTGACTTTTGCTTCTTAAAAGAAGCAAGCTGTCCTTGGCTAGTGACATCCGAATacaccactttaattaag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00041 all species →	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR050713 all species →	Family	Receptor-type Tyrosine-protein Phosphatases/Ushers	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46957 all species →	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06777	PTPRD; receptor-type tyrosine-protein phosphatase delta	EC:3.1.3.48	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.