Gene detail

Detailed information of scaffold981.g8.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold981:60367...68244
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold981.g8.t1

tgtagaaagaagactgttaactcctgaaaataacaacaaccaaaacctgtaacagcaaccagcaacaacctgctgtcagtaactcaccattaactgcgatagagaccaacatcgaataaccataaacgcgtttcgtcgaacacctttggcagaaatccttaagaattatttttcatcctattaacccaccaaattcgttaccccaagaacatatttcggaagggtatatcacagcgtaggcgcaggagatttctcagttttctgaaatccttcgaaatttggtagggagggatttctggatatcttgtaggattttcttcgattttgtggcatttcaaaaagtttcttgtcgaaaggtatctgctgaagctaaatctagtttgcaaaaatgcatccttttcacagcatacttcctacccaagcttcctaccgaggggtgtatcactctcccgacgtggcgtacgagacttttttaaacaataggatttttttttttttttttttttttttttttttttgccaaaggtgtacgagattttcacagagtgatatgcccttcgcttcctaccagcagttctcccggcctaaagtgctcagatctcatactgtatatatattaagtacactgacaactgaactgaaagtctattgaagtttgtgaaatatcacaatttcacagttactcagattgcgacagatatcatattgtatttggggaagcttctgataattatcgtagccatggtgtgaaaagaagggtatcggagggtgtcttttggccttgaataacatctttaaagttccgacaacgctgtttcataaagaacaacaagataccgataaaagctagcatatattctttgccaagcaactatcgaaagatatctgacccttcaactttccaaatacagcgcaacaaatctttcttgccaagttttcctgtcggtggagccaagatttatcacctgacttttataaacacaagtttctcttgagagcttgttcccgttagccatagaacagacaccattcttgtattgtcttgcctctcgttaagataacagtaagccattccaaggcgtctgtcatctagcaaatcctttacacatagataaaccaatcagaagtaggctttcccacgaccggcctattgtgatgaaaatggccaacatggcagcacgcgccacttaaccagttgaccaatcagattcgcccgctcccacggttcttcgtgtgttgagatagctattaacgagccttggagaattaccagcatattttcccacggtgctctcagccaataggactcgtgatcggggcttttggcacgcgccgtagcttgtcagatatcatcaagctgcttgaagcgaggaaggagaaaccgaagagaacggcaaacggtgtaggggtgaaatctcaagggacgaaaactgcgaattgactaaaagaaaaacatcgaaagattgcagcaagtagtgaaactgtttcgttatacagaacaattgagaagaactgtaatttctacagttagtgaaaatcttttcgttttcagggaagtttgaagaagaacaagaaagatgaactcacttgtagaaaagcatccattgaaagagaagaggaaggcaaacaagccgttgcttgaaaggaagagaagagccaggatcaatgactgtctgacagaattaaaacacttggtcttgacatcattgaataaagatatttcaaggttcagtaaaatggagaaagcagatgtacttgacatgaccgtacaatacctcaaagcctgcaaggccagaaaagctaatgaggacaatgcagtgagctttcgagcaggtttcaatgaatgtgctggcgagattattcattacatcatgaagttagatgacgtcgatcgaatgacgaaagcgaaactgttatcatatctagctacgagttgtaaactgtccgaaaacaaccaaagtaaaacttgtgctgagagccaatcacggttatacacgccagtcacatgcttgatcggtagccaatcaccgtgtcaatctccgagtcagatcatcccaagtcctaccgcttcaagtcctttggaaacacatagtccatcagcatttagtccattgatgccgtctgttccccgaagtcccaatgaacacactatatttatgttacaacctgtcgcacagtacataaagtcgcctccgcaggccaaattgattgtcccgaagctaccactgccaccacgtacaaagaacactgcagtagttcaacccagtattaaatcgcatgacaaactgagcagtcaaccagctgaaatagtcaagccagatgtttggagaccttggtagatagcagattgtataattgtcataattgtagcaattttatagatattaaattattttcagaggaattgatgtagctgtaatcgattgtatatgataatgtatataataatgtatagtatttgagtagactgattacatagtcgaagttatcgctatttcaaaaaatataaagtattgttgttgttgcgataactgggattatgtaatgagtctagcatttgaggtgactaaaactaagttcccttgatttttggttattttctgtgaatggaaaattcctactcgctcagcaaatttacattcctttcttttatggcttttacaagtttcactgcttgctgtggcacttttcttgcagtccctagcatgcgtaggcatagcaatactgaaacatgaaaaacgatttggtcggtcaggaagtgctatgcttgttacatgtaacttttagtcgtctgaagtctcaaggaggcttgatggagcttttatggtagcttagagagctgctcgcctctcctgccaccatatgggtgcctgactcaagcctacttgcaactgttttggcacctgtgttaagtgtgccttcgcaacaagatcatctgatccaacgtatagtacttagaaagactgatatatttttaagaatccatcgttcgtgcacctctttctgtaatgtaaatagtagaatttagatcttttttggtacaatttgacaaaagacaagaagaagcaaagtat

Transcript

scaffold981.g8.t1

tgtagaaagaagactgttaactcctgaaaataacaacaaccaaaacctgtaacaGCAACCAGCAACAACCTGCTGTCAGTAACTCACCATTAACTGCGATAGAGACCAACATCGAATAACCATAAACGCGTTTCGTCGAACACCTTTGGCAGAAATCCTTAAGAATTATTTTTCATCCTATTAACCCACCAAATTCGTTACCCCAAGAACATATTTCGGAAGGGTATATCACAGCGTAGGCGCAGGAGATTTCTCAGTTTTCTGAAATCCTTCGAAATTTGGTAGGGAGGGATTTCTGGATATCTTGTAGGATTTTCTTCGATTTTGTGGCATTTCAAAAAGTTTCTTGTCGAAAGGTATCTGCTGAAGCTAAATCTAGTTTGCAAAAATGCATCCTTTTCACAGCATACTTCCTACCCAAGCTTCCTACcgaggggtgtatcactctcccgacgtggcgtacgagacttttttaaacaataggatttttttttttttttttttttttttttttttttgccaaaggtgtacgagattttcacagagtgatatgcccttcgCTTCCTACCAGCAGTTCTCCCGGCCTAAAGTGCTCAGATCTCATACTGTATATATATTAAGTACACTGACAACTGAACTGAAAGTCTATTGAAGTTTGTGAAATATCACAATTTCACAGTTACTCAGATTGCGACAGATATCATATTGTATTTGGGGAAGCTTCTGATAATTATCGTAGCCATGGTGTGAAAAGAAGGGTATCGGAGGGTGTCTTTTGGCCTTGAATAACATCTTTAAAGTTCCGACAACGCTGTTTCATAAAGAACAACAAGATACCGATAAAAGCTAGCATATATTCTTTGCCAAGCAACTATCGAAAGATATCTGACCCTTCAACTTTCCAAATACAGCGCAACAAATCTTTCTTGCCAAGTTTTCCTGTCGGTGGAGCCAAGATTTATCACCTGACTTTTATAAACACAAGTTTCTCTTGAGAGCTTGTTCCCGTTAGCCATAGAACAGACACCATTCTTGTATTGTCTTGCCTCTCGTTAAGATAACAGTAAGCCATTCCAAGGCGTCTGTCATCTAGCAAATCCTTTACACATAGATAAACCAATCAGAAGTAGGCTTTCCCACGACCGGCCTATTGTGATGAAAATGGCCAACATGGCAGCACGCGCCACTTAACCAGTTGACCAATCAGATTCGCCCGCTCCCACGGTTCTTCGTGTGTTGAGATAGCTATTAACGAGCCTTGGAGAATTACCAGCATATTTTCCCACGGTGCTCTCAGCCAATAGGACTCGTGATCGGGGCTTTTGGCACGCGCCGTAGCTTGTCAGATATCATCAAGCTGCTTGAAGCGAGGAAGGAGAAACCGAAGAGAACGGCAAACGGTGTAGGGGTGAAATCTCAAGGGACGAAAACTGCGAATTGACTAAAAGAAAAACATCGAAAGATTGCAGCAAGTAGTGAAACTGTTTCGTTATACAGAACAATTGAGAAGAACTGTAATTTCTACAGTTAGTGAAAATCTTTTCGTTTTCAGGGAAGTTTGAAGAAGAACAAGAAAGATGAACTCACTTGTAGAAAAGCATCCATTGAAAGAGAAGAGGAAGGCAAACAAGCCGTTGCTTGAAAGGAAGAGAAGAGCCAGGATCAATGACTGTCTGACAGAATTAAAACACTTGGTCTTGACATCATTGAATAAAGATATTTCAAGGTTCAGTAAAATGGAGAAAGCAGATGTACTTGACATGACCGTACAATACCTCAAAGCCTGCAAGGCCAGAAAAGCTAATGAGGACAATGCAGTGAGCTTTCGAGCAGGTTTCAATGAATGTGCTGGCGAGATTATTCATTACATCATGAAGTTAGATGACGTCGATCGAATGACGAAAGCGAAACTGTTATCATATCTAGCTACGAGTTGTAAACTGTCCGAAAACAACCAAAGTAAAACTTGTGCTGAGAGCCAATCACGGTTATACACGCCAGTCACATGCTTGATCGGTAGCCAATCACCGTGTCAATCTCCGAGTCAGATCATCCCAAGTCCTACCGCTTCAAGTCCTTTGGAAACACATAGTCCATCAGCATTTAGTCCATTGATGCCGTCTGTTCCCCGAAGTCCCAATGAACACACTATATTTATGTTACAACCTGTCGCACAGTACATAAAGTCGCCTCCGCAGGCCAAATTGATTGTCCCGAAGCTACCACTGCCACCACGTACAAAGAACACTGCAGTAGTTCAACCCAGTATTAAATCGCATGACAAACTGAGCAGTCAACCAGCTGAAATAGTCAAGCCAGATGTTTGGAGACCTTGGTAGATAGCAGATTGTATAATTGTCATAATTGTAGCAATTTTATAGATATTAAATTATTTTCAGAGGAATTGatgtagctgtaatcgattgtatatgataatgtatataataatgtatagtatttgAGTAGACTGATTACATAGTCGAAGTTATCGCTATTTCAAAAAATATAAAGTATTGTTGTTGTTGCGATAACTGGGATTATGTAATGAGTCTAGCATTTGAGGTGACTAAAACTAAGTTCCCTTGATTTTTGGTTATTTTCTGTGAATGGAAAATTCCTACTCGCTCAGCAAATTTACATTCCTTTCTTTTATGGCTTTTACAAGTTTCACTGCTTGCTGTGGCACTTTTCTTGCAGTCCCTAGCATGCGTAGGCATAGCAATACTGAAACATGAAAAACGATTTGGTCGGTCAGGAAGTGCTATGCTTGTTACATGTAACTTTTAGTCGTCTGAAGTCTCAAGGAGGCTTGATGGAGCTTTTATGGTAGCTTAGAGAGCTGCTCGCCTCTCCTGCCACCATATGGGTGCCTGACTCAAGCCTACTTGCAACTGTTTTGGCACCTGTGTTAAGTGTGCCTTCGCAACAAGATCATCTGATCCAACGTATAGTACTTAGAAAGACTGATATATTTTTAAGAATCCATCGTTCGTGCACCTCTTTCTGTAATGTAAATAGTAGAATTTAGATCTTTTTTGGTACAATTTGACAAAAGACAAGAAGAAGCAAAGTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan
PF07527 all species →	Hairy_orange	Hairy Orange	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050370 all species →	Family	Hairy and Enhancer of Split/HEY-related	Interproscan
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR003650 all species →	Domain	Orange domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10985 all species →	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009952 all species →	Biological Process	anterior/posterior pattern specification	Interproscan
GO:0050767 all species →	Biological Process	regulation of neurogenesis	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06054	HES1; hairy and enhancer of split 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.