Gene detail

Detailed information of scaffold995.g7.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold995:84833...114404
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold995.g7.t3

ttaattgcgtatttatttaccttgttttgatcttcgtcttgttttcttgtcttgtttcttctctgttctgtttcctcttgctgatgtaaatgcctcgtgttatttgaatatatcttccttgtattcctgtgtcttagcgcgccttcgtagaagaaagatttttaaaccacaatgccannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatcaaaacaagtcacgtggtcacgtggatcaaaaagtcatgcgagggccatcacgcaaacgaggcttagataactatcaagaattttttcaaaaaaccaagaaacttcgcggcaaaagaggagcaaaactccaatagagaaagctgccactagaatagatcacctgctcatcaacagatcagtgactgcccagcaaggaatctgtggatactccctcgtttttgtgcaggaataaggatagttggccaaatggaaatagtcaaggatgggttgtcaacaaatttttgtgaagaaggtcaaaggattattccttgccccaggtcaaactcccttggatcctgtcattcttggaatcattttccttgcaaatcttggaaatgcaatgataataacaatgccattttcatacttgccaaggatgatgcgggagtttggcatagctgagaaagaaattggaaactacgtaggagtagttgcatcatctttgtatgttggaagaacatttggaagctacatttggggctggctgtgtgataaaattgggcgaaagcgctctctgttgatatcaatgatgttaatgtttgttgcaacgatgctgtttggattcagtaagtcttttgcttgggcagtcacagcaagattattccaaggtttctttggaggcctcatagttgccttgaaagctactgtatttgcattatgtgatgatacaaatcggggtttgggaatggcagttgtcataagctcatatcaaattggcttaattatcggacctgcaatcggtgggtacttggtgcttcctatgaaaagctatccagagacattttcaaaaggttcattgttcgacaagtttcctttccttcttccaatattaatcaattgtgccattcttgcaatagcgattgtcctgacagccatcagagtgccagagacattgaaaaaagacgcggcgaacgagaagacagcattggtagatagtgatcaagcagaggcaggaccctccaagaggcagctgtcagtcacagaatcaagtggttcaaactatctcgacatgtactcttatgatgcatgcattgcacgagaatcgtatacagtattggcagttagacgacaatcagtaaatacaattctggaagaaggaatcgatggaaaacaaaccatttcctattttcagcttagtaatgggagcaattttgtgagatcttcttctcgtcatgaagcaaggtgttgcaaagggttgaaggagtcctctttttggcagcttttgagcataaaaactgtacgagtcagtcttagtatatatgctgtcttctccttcgtcactgttggccttgatgaaactttcccgatatttgcagattcgtctaggcgttatggtggacttgcattcacatctggtcagattggaacagccattttgatagcagctattccagttaccttattgattggcgtcgtcgcaaggctagagcacaaatttggagccaaaaagtacacagcgagatgccgtttcgcaaaagcactctcctcacaaatgcgacaccttgatactagccataaatgcatattaatgataatgattgaaaccccgcctgcttttgtactacagtantaatttattcttatttaacaatttttgtgcttatttatactgtttgtccttatttagacttgtttgacaattcttaattttgacgatttattcttgtatgctcttatcttacactcactgaaataaggtggctttgagaagtactctagagtaccttaaggtaactctgctttctgctctagtacacagcgagatgccgtttcgcaaaagcactctcctcacaaatgcgacaccttgatactagccataaatgcatattaatgat

Transcript

scaffold995.g7.t3

ttaattgcgtatttatttaccttgttttgatcttcgtcttgttttcttgtcttgtttcttctctgttctgtttcctcttgctgatgtaaatgcctcgtgttatttgaatatatcttccttgtattcctgtgtcttagcgcgccttcgtagaagaaagatttttaaaccacaatgccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgatcaaaacaagTCACGTGGTCACGTGGATCAAAAAGTCATGCGAGGGCCATCACGCAAACGAGGCTTAGATAACTATCAAGAATTTTTTCAAAAAACCAAGAAACTTCGCGGCAAAAGAGGAGCAAAACTCCAATAGAGAAAGCTGCCACTAGAATAGATCACCTGCTCATCAACAGATCAGTGACTGCCCAGCAAGGAATCTGTGGATACTCCCTCGTTTTTGTGCAGGAATAAGGATAGTTGGCCAAATGGAAATAGTCAAGGATGGGTTGTCAACAAATTTTTGTGAAGAAGGTCAAAGGATTATTCCTTGCCCCAGGTCAAACTCCCTTGGATCCTGTCATTCTTGGAATCATTTTCCTTGCAAATCTTGGAAATGCAATGATAATAACAATGCCATTTTCATACTTGCCAAGGATGATGCGGGAGTTTGGCATAGCTGAGAAAGAAATTGGAAACTACGTAGGAGTAGTTGCATCATCTTTGTATGTTGGAAGAACATTTGGAAGctacatttggggctggctgtgtgataaaattgggcgaaagcgctctctgttgatatcaatgatgttaatgtttgttgcaacgatgctgtttggattcagtaagtcttttgcttgggcagtcacagCAAGATTATTCCAAGGTTTCTTTGGAGGCCTCATAGTTGCCTTGAAAGCTACTGTATTTGCATTATGTGATGATACAAATCGGGGTTTGGGAATGGCAGTTGTCATAAGCTCATATCAAATTGGCTTAATTATCGGACCTGCAATCGGTGGGTACTTGGTGCTTCCTATGAAAAGCTATCCAGAGACATTTTCAAAAGgttcattgttcgacaagtttcctttccttcttccaatattaatcaattgtgccattcttgcaatagcgattgtcctgacagccatcagagtGCCAGAGACATTGAAAAAAGACGCGGCGAACGAGAAGACAGCATTGGTAGATAGTGATCAAGCAGAGGCAGGACCCTCCAAGAGGCAGCTGTCAGTCACAGAATCAAGTGGTTCAAACTATCTCGACATGTACTCTTATGATGCATGCATTGCACGAGAATCGTATACAGTATTGGCAGTTAGACGACAATCAGTAAATACAATTCTGGAAGAAGGAATCGATGGAAAACAAACCATTTCCTATTTTCAGCTTAGTAATGGGAGCAATTTTGTGAGATCTTCTTCTCGTCATGAAGCAAGGTGTTGCAAAGGGTTGAAGGAGTCCTCTTTTTGGCAGCTTTTGAGCATAAAAACTGTACGAGTCAGTCTTAGTATATATGCTGTCTTCTCCTTCGTCACTGTTGGCCTTGATGAAACTTTCCCGATATTTGCAGATTCGTCTAGGCGTTATGGTGGACTTGCATTCACATCTGGTCAGATTGGAACAGCCATTTTGATAGCAGCTATTCCAGTTACCTTATTGATTGGCGTCGTCGCAAGGCTAGAGCACAAATTTGGAGCCAAAAAGtacacagcgagatgccgtttcgcaaaagcactctcctcacaaatgcgacaccttgatactagccataaatgcatattaatgataatgattgaaaccccgcctgcttttgtactacagtantaatttatTCTTATTTAACAATTTTTGTGCTTATTTATACTGTTTGTCCTTATTTAGACTTGTTTGACAATTCTTAATTTTGACGATTTATTCTTGTATGCTCTTATCTTACACTCACTGAAATAAGGTGGCTTTGAGAAGTACTCTAGAGTACCttaaggtaactctgctttctgctctagtacacagcgagatgccgtttcgcaaaagcactctcctcacaaatgcgacaccttgatactagccataaatgcatattaatgat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07690 all species →	MFS_1	Major Facilitator Superfamily	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR011701 all species →	Family	Major facilitator superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23504 all species →	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold995.g7.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.