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Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora cytherea | acyt_s0003.g278.t1 | XP_029198144.2 | homeobox protein MSX-3 [Acropora millepora] | P13297 Homeobox protein MSX-1 OS=Mus musculus OX=10090 GN=Msx1 PE=1 | JBrowse |
| Acropora cytherea | acyt_s0009.g144.t1 | XP_029213962.2 | NK1 transcription factor-related protein 1-like isoform X1 [Acropora millepora] | Q75W95 NK1 transcription factor-related protein 1 OS=Danio rerio OX | JBrowse |
| Acropora cytherea | acyt_s0009.g146.t1 | XP_015753212.1 | PREDICTED: homeobox protein MSX-2-like [Acropora digitifera] | Q22909 Homeobox protein ceh-30 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Acropora cytherea | acyt_s0009.g147.t1 | XP_029213953.1 | NK1 transcription factor-related protein 1-like isoform X2 [Acropora millepora] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Acropora cytherea | acyt_s0009.g149.t1 | XP_015753213.1 | PREDICTED: homeobox protein ceh-1-like [Acropora digitifera] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Acropora cytherea | acyt_s0011.g129.t1 | XP_029198710.1 | homeobox protein Hox-D4b-like [Acropora millepora] | Q804S6 Homeobox protein EMX1 OS=Danio rerio OX=7955 GN=emx1 PE=2 SV | JBrowse |
| Acropora cytherea | acyt_s0015.g127.t1 | XP_029202679.2 | barH-like 1 homeobox protein [Acropora millepora] | Q28ET4 Homeobox protein vent1 OS=Xenopus tropicalis OX=8364 GN=vent | JBrowse |
| Acropora cytherea | acyt_s0016.g43.t1 | XP_022784688.1 | homeobox protein Hox-D4a-like [Stylophora pistillata] | P81192 Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=1 | JBrowse |
| Acropora cytherea | acyt_s0016.g84.t1 | XP_029206381.1 | homeobox protein EMX1-like [Acropora millepora] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Acropora cytherea | acyt_s0017.g71.t1 | XP_029187870.2 | homeobox protein MOX-2-like [Acropora millepora] | F1Q4R9 Homeobox protein MOX-1 OS=Danio rerio OX=7955 GN=meox1 PE=2 | JBrowse |
| Acropora cytherea | acyt_s0017.g72.t1 | XP_029187868.2 | homeobox protein MOX-1-like [Acropora millepora] | P32442 Homeobox protein MOX-1 OS=Mus musculus OX=10090 GN=Meox1 PE= | JBrowse |
| Acropora cytherea | acyt_s0017.g73.t1 | XP_029187856.2 | homeobox protein MOX-2-like [Acropora millepora] | F1Q4R9 Homeobox protein MOX-1 OS=Danio rerio OX=7955 GN=meox1 PE=2 | JBrowse |
| Acropora cytherea | acyt_s0017.g74.t1 | CAH3169483.1 | unnamed protein product [Porites lobata] | F1Q4R9 Homeobox protein MOX-1 OS=Danio rerio OX=7955 GN=meox1 PE=2 | JBrowse |
| Acropora cytherea | acyt_s0024.g3.t1 | XP_029198464.2 | homeobox protein MSX-3-like [Acropora millepora] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Acropora cytherea | acyt_s0024.g5.t1 | XP_029198466.2 | homeobox protein CHOX-7-like [Acropora millepora] | P19601 Homeobox protein SAX-1 (Fragment) OS=Gallus gallus OX=9031 G | JBrowse |
| Acropora cytherea | acyt_s0025.g112.t1 | XP_029211973.2 | homeobox protein not2-like [Acropora millepora] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Acropora cytherea | acyt_s0025.g122.t1 | XP_029212047.1 | homeobox protein BarH-like 2 [Acropora millepora] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Acropora cytherea | acyt_s0025.g123.t1 | XP_015754797.1 | PREDICTED: NK1 transcription factor-related protein 1-like isoform X2 [Acropora digitifera] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Acropora cytherea | acyt_s0025.g123.t2 | XP_015754796.1 | PREDICTED: NK1 transcription factor-related protein 1-like isoform X1 [Acropora digitifera] | Q75W95 NK1 transcription factor-related protein 1 OS=Danio rerio OX | JBrowse |
| Acropora cytherea | acyt_s0025.g150.t1 | XP_015754830.1 | PREDICTED: homeobox protein EMX1-like [Acropora digitifera] | Q6GLB9 Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 | JBrowse |
