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Support counts the member genes carrying the term. % of genes is that count over all 2,234 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF01410 | COLFI — Fibrillar collagen C-terminal domain | 1918 / 2,234 | 85.9% | 94.4% of 2,032 | ≥80% support |
| GO | GO:0005201 Molecular Function | extracellular matrix structural constituent | 1932 / 2,234 | 86.5% | 96.1% of 2,010 | ≥80% support |
| PANTHER | PTHR24023 | COLLAGEN ALPHA | 1668 / 2,234 | 74.7% | 94.7% of 1,762 | ≥50% support |
| Pfam | PF01391 | Collagen | 1660 / 2,234 | 74.3% | 81.7% of 2,032 | ≥50% support |
| GO | GO:0005615 Cellular Component | extracellular space | 1669 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
| GO | GO:0031012 Cellular Component | extracellular matrix | 1668 / 2,234 | 74.7% | 83.0% of 2,010 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora cytherea | acyt_s0017.g41.t1 | B8V7R6.1 | RecName: Full=Collagen alpha chain [Acropora millepora] | B8V7R6 Collagen alpha chain (Fragment) OS=Acropora millepora OX=452 | JBrowse |
| Acropora cytherea | acyt_s0017.g55.t1 | XP_015756948.1 | PREDICTED: collagen alpha-1(II) chain-like [Acropora digitifera] | O93484 Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN= | JBrowse |
| Acropora cytherea | acyt_s0017.g55.t2 | XP_015756948.1 | PREDICTED: collagen alpha-1(II) chain-like [Acropora digitifera] | O93484 Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN= | JBrowse |
| Acropora cytherea | acyt_s0017.g58.t1 | XP_015756951.1 | PREDICTED: collagen alpha-1(III) chain-like [Acropora digitifera] | Q28668 Collagen alpha-2(I) chain (Fragment) OS=Oryctolagus cuniculu | JBrowse |
| Acropora cytherea | acyt_s0017.g59.t1 | XP_015756952.1 | PREDICTED: collagen alpha-1(I) chain-like [Acropora digitifera] | Q6P4Z2 Collagen alpha-1(II) chain OS=Xenopus tropicalis OX=8364 GN= | JBrowse |
| Acropora cytherea | acyt_s0017.g60.t1 | XP_044178817.1 | collagen alpha-1(I) chain-like [Acropora millepora] | O93484 Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN= | JBrowse |
| Acropora cytherea | acyt_s0017.g60.t2 | XP_044178817.1 | collagen alpha-1(I) chain-like [Acropora millepora] | O93484 Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN= | JBrowse |
| Acropora cytherea | acyt_s0017.g60.t3 | XP_044178817.1 | collagen alpha-1(I) chain-like [Acropora millepora] | O93484 Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN= | JBrowse |
| Acropora cytherea | acyt_s0017.g60.t4 | XP_044178817.1 | collagen alpha-1(I) chain-like [Acropora millepora] | O93484 Collagen alpha-2(I) chain OS=Oncorhynchus mykiss OX=8022 GN= | JBrowse |
| Acropora cytherea | acyt_s0017.g67.t1 | XP_044178962.1 | collagen alpha-1(I) chain-like isoform X11 [Acropora millepora] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
| Acropora cytherea | acyt_s0017.g67.t2 | XP_044178962.1 | collagen alpha-1(I) chain-like isoform X11 [Acropora millepora] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
| Acropora cytherea | acyt_s0017.g68.t1 | XP_015756967.1 | PREDICTED: collagen alpha chain-like [Acropora digitifera] | B8V7R6 Collagen alpha chain (Fragment) OS=Acropora millepora OX=452 | JBrowse |
| Acropora cytherea | acyt_s0023.g93.t1 | XP_044162676.1 | collagen alpha-2(IX) chain-like isoform X2 [Acropora millepora] | Q8IZC6 Collagen alpha-1(XXVII) chain OS=Homo sapiens OX=9606 GN=COL | JBrowse |
| Acropora cytherea | acyt_s0023.g93.t2 | XP_044162676.1 | collagen alpha-2(IX) chain-like isoform X2 [Acropora millepora] | Q8IZC6 Collagen alpha-1(XXVII) chain OS=Homo sapiens OX=9606 GN=COL | JBrowse |
| Acropora cytherea | acyt_s0041.g138.t1 | XP_044180779.1 | collagen alpha-1(I) chain-like [Acropora millepora] | P12107 Collagen alpha-1(XI) chain OS=Homo sapiens OX=9606 GN=COL11A | JBrowse |
| Acropora cytherea | acyt_s0041.g138.t2 | XP_044180771.1 | collagen alpha-1(I) chain-like [Acropora millepora] | P12107 Collagen alpha-1(XI) chain OS=Homo sapiens OX=9606 GN=COL11A | JBrowse |
| Acropora cytherea | acyt_s0052.g23.t1 | XP_015773655.1 | PREDICTED: collagen alpha-1(I) chain-like [Acropora digitifera] | Q6P4Z2 Collagen alpha-1(II) chain OS=Xenopus tropicalis OX=8364 GN= | JBrowse |
| Acropora cytherea | acyt_s0052.g23.t2 | XP_015773655.1 | PREDICTED: collagen alpha-1(I) chain-like [Acropora digitifera] | Q6P4Z2 Collagen alpha-1(II) chain OS=Xenopus tropicalis OX=8364 GN= | JBrowse |
| Acropora cytherea | acyt_s0070.g50.t1 | XP_044179394.1 | collagen alpha-1(I) chain-like [Acropora millepora] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
| Acropora cytherea | acyt_s0070.g50.t2 | XP_044179394.1 | collagen alpha-1(I) chain-like [Acropora millepora] | Q91717 Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2 | JBrowse |
