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Support counts the member genes carrying the term. % of genes is that count over all 6,131 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF00046 | Homeodomain | 5534 / 6,131 | 90.3% | 100.0% of 5,537 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 5541 / 6,131 | 90.4% | 99.9% of 5,546 | ≥80% support |
| GO | GO:0000981 Molecular Function | DNA-binding transcription factor activity, RNA polymerase II-specific | 5489 / 6,131 | 89.5% | 99.0% of 5,546 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 5411 / 6,131 | 88.3% | 97.6% of 5,546 | ≥80% support |
| GO | GO:0005634 Cellular Component | nucleus | 4181 / 6,131 | 68.2% | 75.4% of 5,546 | ≥50% support |
| GO | GO:0006357 Biological Process | regulation of transcription by RNA polymerase II | 4143 / 6,131 | 67.6% | 74.7% of 5,546 | ≥50% support |
| GO | GO:0000978 Molecular Function | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3711 / 6,131 | 60.5% | 66.9% of 5,546 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora echinata | aech_s0009.g303.t1 | XP_029198144.2 | homeobox protein MSX-3 [Acropora millepora] | P13297 Homeobox protein MSX-1 OS=Mus musculus OX=10090 GN=Msx1 PE=1 | JBrowse |
| Acropora echinata | aech_s0015.g15.t1 | XP_029211973.2 | homeobox protein not2-like [Acropora millepora] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Acropora echinata | aech_s0015.g152.t1 | XP_015757979.1 | PREDICTED: homeobox protein Nkx-6.2-like [Acropora digitifera] | Q9C056 Homeobox protein Nkx-6.2 OS=Homo sapiens OX=9606 GN=NKX6-2 P | JBrowse |
| Acropora echinata | aech_s0015.g23.t1 | XP_029212047.1 | homeobox protein BarH-like 2 [Acropora millepora] | Q91770 Homeobox protein not2 OS=Xenopus laevis OX=8355 GN=not2 PE=2 | JBrowse |
| Acropora echinata | aech_s0015.g24.t1 | XP_015754797.1 | PREDICTED: NK1 transcription factor-related protein 1-like isoform X2 [Acropora digitifera] | Q8AWZ0 Homeobox protein Hox-B8a OS=Danio rerio OX=7955 GN=hoxb8a PE | JBrowse |
| Acropora echinata | aech_s0015.g24.t2 | XP_015754796.1 | PREDICTED: NK1 transcription factor-related protein 1-like isoform X1 [Acropora digitifera] | Q06615 Homeobox protein notochord OS=Xenopus laevis OX=8355 GN=noto | JBrowse |
| Acropora echinata | aech_s0015.g242.t1 | XP_022784688.1 | homeobox protein Hox-D4a-like [Stylophora pistillata] | P81192 Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=1 | JBrowse |
| Acropora echinata | aech_s0015.g51.t1 | XP_015754830.1 | PREDICTED: homeobox protein EMX1-like [Acropora digitifera] | Q6GLB9 Homeobox protein EMX1 OS=Xenopus tropicalis OX=8364 GN=emx1 | JBrowse |
| Acropora echinata | aech_s0027.g61.t1 | XP_029198466.2 | homeobox protein CHOX-7-like [Acropora millepora] | P19601 Homeobox protein SAX-1 (Fragment) OS=Gallus gallus OX=9031 G | JBrowse |
| Acropora echinata | aech_s0027.g63.t1 | XP_029198464.2 | homeobox protein MSX-3-like [Acropora millepora] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Acropora echinata | aech_s0028.g31.t1 | XP_029201006.2 | homeobox protein Hox-A7-like [Acropora millepora] | P31247 Homeobox protein Hox-B3 (Fragment) OS=Xenopus laevis OX=8355 | JBrowse |
| Acropora echinata | aech_s0028.g32.t1 | AAK28380.1 | homeodomain protein cnox-2 [Acropora millepora] | P81192 Homeobox protein Hox-A4 (Fragment) OS=Lineus sanguineus OX=1 | JBrowse |
| Acropora echinata | aech_s0032.g115.t1 | XP_029195454.1 | barH-like 2 homeobox protein isoform X1 [Acropora millepora] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Acropora echinata | aech_s0032.g115.t2 | XP_029195455.1 | barH-like 2 homeobox protein isoform X2 [Acropora millepora] | P56407 Homeobox protein ceh-9 OS=Caenorhabditis elegans OX=6239 GN= | JBrowse |
| Acropora echinata | aech_s0032.g143.t1 | XP_029195462.1 | homeobox protein HMX3-B-like [Acropora millepora] | Q90XN9 Homeobox protein HMX3-B OS=Oryzias latipes OX=8090 GN=hmx3b | JBrowse |
| Acropora echinata | aech_s0032.g144.t1 | XP_015768464.1 | PREDICTED: homeobox protein slou-like isoform X1 [Acropora digitifera] | Q75W95 NK1 transcription factor-related protein 1 OS=Danio rerio OX | JBrowse |
| Acropora echinata | aech_s0039.g121.t1 | XP_015753213.1 | PREDICTED: homeobox protein ceh-1-like [Acropora digitifera] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Acropora echinata | aech_s0039.g123.t1 | XP_029213953.1 | NK1 transcription factor-related protein 1-like isoform X2 [Acropora millepora] | P15858 Homeobox protein H40 (Fragment) OS=Apis mellifera OX=7460 PE | JBrowse |
| Acropora echinata | aech_s0039.g124.t1 | XP_015753212.1 | PREDICTED: homeobox protein MSX-2-like [Acropora digitifera] | Q22909 Homeobox protein ceh-30 OS=Caenorhabditis elegans OX=6239 GN | JBrowse |
| Acropora echinata | aech_s0039.g126.t1 | XP_029213962.2 | NK1 transcription factor-related protein 1-like isoform X1 [Acropora millepora] | Q75W95 NK1 transcription factor-related protein 1 OS=Danio rerio OX | JBrowse |
