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This orthogroup contains 288 genes from 90 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 288 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR12121 | CARBON CATABOLITE REPRESSOR PROTEIN 4 | 268 / 288 | 93.1% | 100.0% of 268 | ≥80% support |
| Pfam | PF03372 | Exo_endo_phos — Endonuclease/Exonuclease/phosphatase family | 234 / 288 | 81.3% | 99.6% of 235 | ≥80% support |
| GO | GO:0000175 Molecular Function | 3'-5'-RNA exonuclease activity | 268 / 288 | 93.1% | 100.0% of 268 | ≥80% support |
| GO | GO:0003824 Molecular Function | catalytic activity | 235 / 288 | 81.6% | 87.7% of 268 | ≥80% support |
| GO | GO:0000289 Biological Process | nuclear-transcribed mRNA poly(A) tail shortening | 187 / 288 | 64.9% | 69.8% of 268 | ≥50% support |
| GO | GO:0004535 Molecular Function | poly(A)-specific ribonuclease activity | 187 / 288 | 64.9% | 69.8% of 268 | ≥50% support |
| GO | GO:0005634 Cellular Component | nucleus | 187 / 288 | 64.9% | 69.8% of 268 | ≥50% support |
| GO | GO:0005737 Cellular Component | cytoplasm | 187 / 288 | 64.9% | 69.8% of 268 | ≥50% support |
| GO | GO:0030014 Cellular Component | CCR4-NOT complex | 187 / 288 | 64.9% | 69.8% of 268 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Actinia mediterranea | ENSQPTP00000027114.1 | XP_031566616.1 | carbon catabolite repressor protein 4 homolog 3-like [Actinia tenebrosa] | Q1EA11 CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr4 OS=Cocci | JBrowse |
| Actinia mediterranea | ENSQPTP00000031161.1 | XP_031552399.1 | nocturnin-like [Actinia tenebrosa] | – | JBrowse |
| Actinia mediterranea | ENSQPTP00000031173.1 | none | – | JBrowse | |
| Actinia mediterranea | ENSQPTP00000067453.1 | XP_031566616.1 | carbon catabolite repressor protein 4 homolog 3-like [Actinia tenebrosa] | Q1EA11 CCR4-Not complex 3'-5'-exoribonuclease subunit Ccr4 OS=Cocci | JBrowse |
| Actinia mediterranea | ENSQPTP00000073793.1 | XP_031552399.1 | nocturnin-like [Actinia tenebrosa] | – | JBrowse |
| Actinia mediterranea | ENSQPTP00000073804.1 | none | – | JBrowse |
